nixpkgs/pkgs/development/libraries/science/biology/htslib/default.nix

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{ lib, stdenv, fetchurl, zlib, bzip2, xz, curl, perl }:
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stdenv.mkDerivation rec {
pname = "htslib";
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version = "1.11";
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src = fetchurl {
url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng";
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};
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# perl is only used during the check phase.
nativeBuildInputs = [ perl ];
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buildInputs = [ zlib bzip2 xz curl ];
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configureFlags = [ "--enable-libcurl" ]; # optional but strongly recommended
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installFlags = [ "prefix=$(out)" ];
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preCheck = ''
patchShebangs test/
'';
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enableParallelBuilding = true;
doCheck = true;
meta = with lib; {
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description = "A C library for reading/writing high-throughput sequencing data";
license = licenses.mit;
homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
maintainers = [ maintainers.mimame ];
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};
}