nixpkgs/pkgs/applications/science/biology/minc-tools/default.nix

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{ stdenv, fetchFromGitHub, cmake, makeWrapper, flex, bison, perl, TextFormat,
libminc, libjpeg, nifticlib, zlib }:
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stdenv.mkDerivation rec {
pname = "minc-tools";
version = "unstable-2020-07-25";
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src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "fb0a68a07d281e4e099c5d54df29925240de14c1";
sha256 = "0zcv2sdj3k6k0xjqdq8j5bxq8smm48dzai90vwsmz8znmbbm6kvw";
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};
nativeBuildInputs = [ cmake flex bison makeWrapper ];
buildInputs = [ libminc libjpeg nifticlib zlib ];
propagatedBuildInputs = [ perl TextFormat ];
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cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake"
"-DZNZ_INCLUDE_DIR=${nifticlib}/include/nifti"
"-DNIFTI_INCLUDE_DIR=${nifticlib}/include/nifti" ];
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postFixup = ''
for prog in minccomplete minchistory mincpik; do
wrapProgram $out/bin/$prog --prefix PERL5LIB : $PERL5LIB
done
'';
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meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/minc-tools";
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description = "Command-line utilities for working with MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
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};
}