nixpkgs/pkgs/applications/science/biology/cd-hit/default.nix

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{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages, openmp }:
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stdenv.mkDerivation rec {
version = "4.8.1";
pname = "cd-hit";
src = fetchFromGitHub {
owner = "weizhongli";
repo = "cdhit";
rev = "V${version}";
sha256 = "032nva6iiwmw59gjipm1mv0xlcckhxsf45mc2qbnv19lbis0q22i";
};
propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.ImageMagick ];
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nativeBuildInputs = [ zlib makeWrapper ];
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buildInputs = lib.optional stdenv.cc.isClang openmp;
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makeFlags = [
"CC=${stdenv.cc.targetPrefix}c++" # remove once https://github.com/weizhongli/cdhit/pull/114 is merged
"PREFIX=$(out)/bin"
];
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preInstall = "mkdir -p $out/bin";
postFixup = ''
wrapProgram $out/bin/FET.pl --prefix PERL5LIB : $PERL5LIB
wrapProgram $out/bin/plot_2d.pl --prefix PERL5LIB : $PERL5LIB
wrapProgram $out/bin/clstr_list_sort.pl --prefix PERL5LIB : $PERL5LIB
'';
meta = with lib; {
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description = "Clustering and comparing protein or nucleotide sequences";
homepage = "http://weizhongli-lab.org/cd-hit/";
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license = licenses.gpl2;
maintainers = [ maintainers.bzizou ];
platforms = platforms.unix;
};
}