Merge pull request #127829 from veprbl/pr/snakemake_6_5_0
This commit is contained in:
commit
1c8bc6c2f1
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@ -2,11 +2,12 @@
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python3Packages.buildPythonApplication rec {
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python3Packages.buildPythonApplication rec {
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pname = "snakemake";
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pname = "snakemake";
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version = "6.0.5";
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version = "6.5.0";
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propagatedBuildInputs = with python3Packages; [
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propagatedBuildInputs = with python3Packages; [
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appdirs
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appdirs
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ConfigArgParse
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ConfigArgParse
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connection-pool
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datrie
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datrie
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docutils
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docutils
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filelock
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filelock
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@ -19,13 +20,15 @@ python3Packages.buildPythonApplication rec {
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ratelimiter
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ratelimiter
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requests
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requests
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smart-open
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smart-open
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stopit
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tabulate
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toposort
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toposort
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wrapt
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wrapt
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];
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];
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src = python3Packages.fetchPypi {
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src = python3Packages.fetchPypi {
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inherit pname version;
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inherit pname version;
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sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3";
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sha256 = "b166ec74537e02553fcaf0ddcffc32dfdb9dcaa1260af297a56eded6a179b2ee";
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};
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};
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doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
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doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
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27
pkgs/development/python-modules/connection-pool/default.nix
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27
pkgs/development/python-modules/connection-pool/default.nix
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@ -0,0 +1,27 @@
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{ lib
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, buildPythonPackage
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, fetchPypi
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, isPy3k
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}:
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buildPythonPackage rec {
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pname = "connection-pool";
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version = "0.0.3";
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disabled = !isPy3k;
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src = fetchPypi {
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pname = "connection_pool";
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inherit version;
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sha256 = "bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc";
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};
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doCheck = false; # no tests
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pythonImportsCheck = [ "connection_pool" ];
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meta = with lib; {
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description = "Thread-safe connection pool";
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homepage = "https://github.com/zhouyl/ConnectionPool";
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license = with licenses; [ mit ];
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maintainers = with maintainers; [ veprbl ];
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};
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}
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26
pkgs/development/python-modules/stopit/default.nix
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26
pkgs/development/python-modules/stopit/default.nix
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@ -0,0 +1,26 @@
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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}:
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buildPythonPackage rec {
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pname = "stopit";
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version = "1.1.2";
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# tests are missing from the PyPi tarball
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src = fetchFromGitHub {
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owner = "glenfant";
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repo = pname;
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rev = version;
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sha256 = "sha256-uXJUA70JOGWT2NmS6S7fPrTWAJZ0mZ/hICahIUzjfbw=";
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};
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pythonImportsCheck = [ "stopit" ];
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meta = with lib; {
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description = "Raise asynchronous exceptions in other thread, control the timeout of blocks or callables with a context manager or a decorator";
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homepage = "https://github.com/glenfant/stopit";
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license = with licenses; [ mit ];
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maintainers = with maintainers; [ veprbl ];
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};
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}
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@ -1335,6 +1335,8 @@ in {
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connect-box = callPackage ../development/python-modules/connect_box { };
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connect-box = callPackage ../development/python-modules/connect_box { };
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connection-pool = callPackage ../development/python-modules/connection-pool { };
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coqpit = callPackage ../development/python-modules/coqpit { };
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coqpit = callPackage ../development/python-modules/coqpit { };
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cerberus = callPackage ../development/python-modules/cerberus { };
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cerberus = callPackage ../development/python-modules/cerberus { };
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@ -8226,6 +8228,8 @@ in {
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stone = callPackage ../development/python-modules/stone { };
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stone = callPackage ../development/python-modules/stone { };
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stopit = callPackage ../development/python-modules/stopit { };
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strategies = callPackage ../development/python-modules/strategies { };
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strategies = callPackage ../development/python-modules/strategies { };
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stravalib = callPackage ../development/python-modules/stravalib { };
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stravalib = callPackage ../development/python-modules/stravalib { };
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