diff --git a/pkgs/applications/science/biology/whisper/default.nix b/pkgs/applications/science/biology/whisper/default.nix new file mode 100644 index 00000000000..9e336600202 --- /dev/null +++ b/pkgs/applications/science/biology/whisper/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, fetchurl }: + +stdenv.mkDerivation rec { + pname = "whisper"; + version = "2.0.1"; + + src = fetchFromGitHub { + owner = "refresh-bio"; + repo = pname; + rev = "v${version}"; + sha256 = "0wpx1w1mar2d6zq2v14vy6nn896ds1n3zshxhhrrj5d528504iyw"; + }; + + preConfigure = '' + cd src + + # disable default static linking + sed -i 's/ -static / /' makefile + ''; + + installPhase = '' + runHook preInstall + install -Dt $out/bin whisper whisper-index + runHook postInstall + ''; + + meta = with stdenv.lib; { + description = "Short read sequence mapper"; + license = licenses.gpl3; + homepage = "https://github.com/refresh-bio/whisper"; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.x86_64; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index a11116c96b2..2d636b02ddd 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -24906,6 +24906,8 @@ in varscan = callPackage ../applications/science/biology/varscan { }; + whisper = callPackage ../applications/science/biology/whisper { }; + hmmer = callPackage ../applications/science/biology/hmmer { }; bwa = callPackage ../applications/science/biology/bwa { };