diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 931692709f7..d339eaccf75 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -369,9 +369,7 @@ let ShortRead = [ pkgs.zlib ]; oligo = [ pkgs.zlib ]; gmapR = [ pkgs.zlib ]; - ncdf = [ pkgs.netcdf ]; Rsubread = [ pkgs.zlib ]; - SemiCompRisks = [ pkgs.gsl_1 ]; XVector = [ pkgs.zlib ]; Rsamtools = [ pkgs.zlib ]; rtracklayer = [ pkgs.zlib ]; @@ -698,6 +696,8 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ + "spoccutils" # depends on broken package spocc + "mapr" # depends on broken package spocc "vmsbase" # broken build "vcfR" # broken build "strataG" # broken build @@ -1084,14 +1084,12 @@ let "rjags" # broken build "proteoQC" # depends on broken package rTANDEM "PGA" # depends on broken package rTANDEM - "cudatoolkit" # broken build "MBESS" # depends on broken package OpenMx "IONiseR" # depends on broken package rhdf5 "DOQTL" # depends on broken package rhdf5 "DmelSGI" # depends on broken package rhdf5 "flowDiv" # depends on broken package ncdfFlow "ChemmineDrugs" # depends on broken package ChemmineR - "nlopt" # broken build "stpm" # depends on broken package nloptr "sjmisc" # depends on broken package nloptr "rstanarm" # depends on broken package nloptr