neuron: init at 7.4

This commit is contained in:
devresse 2016-02-19 10:52:22 +00:00
parent cc58339345
commit 4046d3ce8d
2 changed files with 44 additions and 0 deletions

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@ -0,0 +1,38 @@
{ stdenv
, fetchurl
, pkgconfig
, ncurses
, mpi ? null
}:
stdenv.mkDerivation rec {
name = "neuron-7.4";
buildInputs = [ stdenv pkgconfig ncurses mpi ];
src = fetchurl {
url = "http://www.neuron.yale.edu/ftp/neuron/versions/v7.4/nrn-7.4.tar.gz";
sha256 = "1rid8cmv5mca0vqkgwahm0prkwkbdvchgw2bdwvx4adkn8bbl0ql";
};
enableParallelBuilding = true;
configureFlags = [ "--without-x"
"${if mpi != null then "--with-mpi" else "--without-mpi"}" ];
meta = with stdenv.lib; {
description = "Simulation environment for empirically-based simulations of neurons and networks of neurons";
longDescription = "NEURON is a simulation environment for developing and exercising models of
neurons and networks of neurons. It is particularly well-suited to problems where
cable properties of cells play an important role, possibly including extracellular
potential close to the membrane), and where cell membrane properties are complex,
involving many ion-specific channels, ion accumulation, and second messengers";
license = licenses.bsd3;
homepage = http://www.neuron.yale.edu/neuron;
maintainers = [ maintainers.adev ];
platforms = platforms.all;
};
}

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@ -15074,6 +15074,12 @@ let
emboss = callPackage ../applications/science/biology/emboss { };
neuron = callPackage ../applications/science/biology/neuron { };
neuron-mpi = appendToName "mpi" (neuron.override {
mpi = pkgs.openmpi;
});
mrbayes = callPackage ../applications/science/biology/mrbayes { };
ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };