sambamba: init 0.7.1

This commit is contained in:
Justin Bedo 2019-12-18 08:54:44 +11:00
parent 2ada3b5d3e
commit 617483d27a
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2 changed files with 33 additions and 0 deletions

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@ -0,0 +1,31 @@
{ stdenv, fetchFromGitHub, python3, which, dmd, ldc, zlib }:
stdenv.mkDerivation rec {
pname = "sambamba";
version = "0.7.1";
src = fetchFromGitHub {
owner = "biod";
repo = "sambamba";
rev = "v${version}";
sha256 = "0k5wy06zrbsc40x6answgz7rz2phadyqwlhi9nqxbfqanbg9kq20";
fetchSubmodules = true;
};
nativeBuildInputs = [ which python3 dmd ldc ];
buildInputs = [ zlib ];
# Upstream's install target is broken; copy manually
installPhase = ''
mkdir -p $out/bin
cp bin/sambamba-${version} $out/bin/sambamba
'';
meta = with stdenv.lib; {
description = "SAM/BAM processing tool";
homepage = "https://lomereiter.github.io/sambamba/";
maintainers = with maintainers; [ jbedo ];
license = with licenses; gpl2;
platforms = platforms.x86_64;
};
}

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@ -24919,6 +24919,8 @@ in
mpi = true;
});
sambamba = callPackage ../applications/science/biology/sambamba { };
samblaster = callPackage ../applications/science/biology/samblaster { };
samtools = callPackage ../applications/science/biology/samtools { };