marvin: init at 19.1.0

Also adding myself (fusion809) as a maintainer.
The marvin Nix file in this commit is largely thanks to @msteen.
This commit is contained in:
Brenton Horne 2019-01-15 00:23:38 +10:00
parent 6359e9baf0
commit 6be5e679b1
6 changed files with 85 additions and 0 deletions

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@ -1586,6 +1586,11 @@
email = "eocallaghan@alterapraxis.com";
name = "Edward O'Callaghan";
};
fusion809 = {
email = "brentonhorne77@gmail.com";
github = "fusion809";
name = "Brenton Horne";
};
fuuzetsu = {
email = "fuuzetsu@fuuzetsu.co.uk";
github = "fuuzetsu";

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@ -0,0 +1,9 @@
#!/usr/bin/env xdg-open
[Desktop Entry]
Type=Application
Name=ChemAxon License Manager
Exec=@out@/bin/LicenseManager
Icon=LicenseManager
Categories=Education;Science;Chemistry;
StartupWMClass=com-install4j-runtime-launcher-UnixLauncher
Comment=License manager for ChemAxon software like MarvinSketch

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@ -0,0 +1,10 @@
#!/usr/bin/env xdg-open
[Desktop Entry]
Type=Application
Name=MarvinSketch
Exec=@out@/bin/msketch %f
Icon=MarvinSketch
MimeType=text/xml;text/plain;chemical/x-cml;chemical/x-mdl-molfile;chemical/x-mdl-sdfile;chemical/x-mol2;chemical/x-pdb;chemical/x-xyz;chemical/x-mdl-rdfile;chemical/x-mdl-rxnfile;chemical/x-inchi;
Categories=Education;Science;Chemistry;
StartupWMClass=com-install4j-runtime-launcher-UnixLauncher
Comment=Molecular modelling, analysis and structure drawing program

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@ -0,0 +1,10 @@
#!/usr/bin/env xdg-open
[Desktop Entry]
Type=Application
Name=MarvinView
Exec=@out@/bin/mview %f
Icon=MarvinView
Comment=Molecule viewing program
MimeType=text/xml;text/plain;chemical/x-cml;chemical/x-mdl-molfile;chemical/x-mdl-sdfile;chemical/x-mol2;chemical/x-pdb;chemical/x-xyz;chemical/x-mdl-rdfile;chemical/x-mdl-rxnfile;chemical/x-inchi;
Categories=Education;Science;Chemistry;
StartupWMClass=com-install4j-runtime-launcher-UnixLauncher

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@ -0,0 +1,49 @@
{ stdenv, fetchurl, dpkg, makeWrapper, coreutils, gawk, gnugrep, gnused, jre }:
with stdenv.lib;
stdenv.mkDerivation rec {
name = "${pname}-${version}";
pname = "marvin";
version = "19.1.0";
src = fetchurl {
name = "marvin-${version}.deb";
url = "http://dl.chemaxon.com/marvin/${version}/marvin_linux_${versions.majorMinor version}.deb";
sha256 = "1ccsimfvms5q4prjyk6sg5hsc3hkcjjfq3gl7jjm8dgd2173zzyc";
};
nativeBuildInputs = [ dpkg makeWrapper ];
unpackPhase = ''
dpkg-deb -x $src opt
'';
installPhase = ''
wrapBin() {
makeWrapper $1 $out/bin/$(basename $1) \
--set INSTALL4J_JAVA_HOME "${jre}" \
--prefix PATH : ${makeBinPath [ coreutils gawk gnugrep gnused ]}
}
cp -r opt $out
mkdir -p $out/bin $out/share/pixmaps $out/share/applications
for name in LicenseManager MarvinSketch MarvinView; do
wrapBin $out/opt/chemaxon/marvinsuite/$name
ln -s {$out/opt/chemaxon/marvinsuite/.install4j,$out/share/pixmaps}/$name.png
done
for name in cxcalc cxtrain evaluate molconvert mview msketch; do
wrapBin $out/opt/chemaxon/marvinsuite/bin/$name
done
${concatStrings (map (name: ''
substitute ${./. + "/${name}.desktop"} $out/share/applications/${name}.desktop --subst-var out
'') [ "LicenseManager" "MarvinSketch" "MarvinView" ])}
'';
meta = {
description = "A chemical modelling, analysis and structure drawing program";
homepage = https://chemaxon.com/products/marvin;
maintainers = with maintainers; [ fusion809 ];
license = licenses.unfree;
platforms = platforms.linux;
};
}

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@ -21395,6 +21395,8 @@ in
jmol = callPackage ../applications/science/chemistry/jmol { };
marvin = callPackage ../applications/science/chemistry/marvin { };
molden = callPackage ../applications/science/chemistry/molden { };
octopus = callPackage ../applications/science/chemistry/octopus { openblas=openblasCompat; };