Merge pull request #31781 from robertodr/hdf5-fortran-2003

Update HDF5 and add option to compile Fortran2003 interface
This commit is contained in:
Frederik Rietdijk 2017-11-25 10:37:42 +00:00 committed by GitHub
commit 88eea6947f
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3 changed files with 87 additions and 8 deletions

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@ -0,0 +1,76 @@
{ stdenv
, fetchurl
, gcc
, removeReferencesTo
, cpp ? false
, gfortran ? null
, fortran2003 ? false
, zlib ? null
, szip ? null
, mpi ? null
, enableShared ? true
}:
# cpp and mpi options are mutually exclusive
# (--enable-unsupported could be used to force the build)
assert !cpp || mpi == null;
# Need a Fortran compiler for Fortran2003 bindings
assert fortran2003 -> gfortran != null;
# No point splitting version 1.8.18 into multiple outputs.
# The library /lib/libhdf5.so has a reference to gcc-wrapper
let inherit (stdenv.lib) optional optionals; in
stdenv.mkDerivation rec {
version = "1.8.19";
name = "hdf5-${version}";
src = fetchurl {
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${name}/src/${name}.tar.bz2";
sha256 = "0f3jfbqpaaq21ighi40qzs52nb52kc2d2yjk541rjmsx20b3ih2r" ;
};
passthru = {
mpiSupport = (mpi != null);
inherit mpi;
};
nativeBuildInputs = [ removeReferencesTo ];
buildInputs = []
++ optional (gfortran != null) gfortran
++ optional (szip != null) szip;
propagatedBuildInputs = []
++ optional (zlib != null) zlib
++ optional (mpi != null) mpi;
configureFlags = []
++ optional cpp "--enable-cxx"
++ optional (gfortran != null) "--enable-fortran"
++ optional fortran2003 "--enable-fortran2003"
++ optional (szip != null) "--with-szlib=${szip}"
++ optionals (mpi != null) ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
++ optional enableShared "--enable-shared";
patches = [./bin-mv.patch];
postInstall = ''
find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
'';
meta = {
description = "Data model, library, and file format for storing and managing data";
longDescription = ''
HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
'';
license = stdenv.lib.licenses.free; # BSD-like
homepage = https://www.hdfgroup.org/HDF5/;
platforms = stdenv.lib.platforms.unix;
broken = (gfortran != null) && stdenv.isDarwin;
};
}

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@ -14,17 +14,14 @@
# (--enable-unsupported could be used to force the build)
assert !cpp || mpi == null;
# No point splitting version 1.8.18 into multiple outputs.
# The library /lib/libhdf5.so has a reference to gcc-wrapper
let inherit (stdenv.lib) optional optionals; in
stdenv.mkDerivation rec {
version = "1.8.18";
version = "1.10.1";
name = "hdf5-${version}";
src = fetchurl {
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${name}/src/${name}.tar.bz2";
sha256 = "13542vrnl1p35n8vbq0wzk40vddmm33q5nh04j98c7r1yjnxxih1";
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/${name}/src/${name}.tar.bz2";
sha256 = "1wpbi15za7kbsvih88kfcxblw412pjndl16x88dgnqr47piy2p4w";
};
passthru = {
@ -59,8 +56,8 @@ stdenv.mkDerivation rec {
description = "Data model, library, and file format for storing and managing data";
longDescription = ''
HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
'';
license = stdenv.lib.licenses.free; # BSD-like

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@ -2590,6 +2590,12 @@ with pkgs;
mpi = null;
};
hdf5_1_8 = callPackage ../tools/misc/hdf5/1_8.nix {
gfortran = null;
szip = null;
mpi = null;
};
hdf5-mpi = appendToName "mpi" (hdf5.override {
szip = null;
mpi = pkgs.openmpi;