Merge pull request #130897 from veprbl/pr/toil

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Sandro 2021-07-21 16:08:21 +02:00 committed by GitHub
commit 8ca1a0ba91
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6 changed files with 136 additions and 0 deletions

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@ -0,0 +1,39 @@
{ lib, fetchFromGitHub, python3Packages }:
python3Packages.buildPythonApplication rec {
pname = "toil";
version = "5.4.0";
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "73c0648828bd3610c07b7648dd06d6ec27efefdb09473bf01d05d91eb899c9fd";
};
postPatch = ''
substituteInPlace setup.py \
--replace "docker = " "docker = 'docker' #" \
--replace "addict = " "addict = 'addict' #"
'';
propagatedBuildInputs = with python3Packages; [
addict
docker
pytz
pyyaml
enlighten
psutil
python-dateutil
dill
];
checkInputs = with python3Packages; [ pytestCheckHook ];
pytestFlagsArray = [ "src/toil/test" ];
pythonImportsCheck = [ "toil" ];
meta = with lib; {
homepage = "https://toil.ucsc-cgl.org/";
license = with licenses; [ asl20 ];
description = "Workflow engine written in pure Python";
maintainers = with maintainers; [ veprbl ];
};
}

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@ -0,0 +1,26 @@
{ lib
, buildPythonPackage
, fetchPypi
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "addict";
version = "2.4.0";
src = fetchPypi {
inherit pname version;
sha256 = "b3b2210e0e067a281f5646c8c5db92e99b7231ea8b0eb5f74dbdf9e259d4e494";
};
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "addict" ];
meta = with lib; {
description = "Module that exposes a dictionary subclass that allows items to be set like attributes";
homepage = "https://github.com/mewwts/addict";
license = with licenses; [ mit ];
maintainers = with maintainers; [ veprbl ];
};
}

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@ -0,0 +1,37 @@
{ lib
, stdenv
, buildPythonPackage
, fetchPypi
, blessed
, prefixed
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "enlighten";
version = "1.10.1";
src = fetchPypi {
inherit pname version;
sha256 = "3391916586364aedced5d6926482b48745e4948f822de096d32258ba238ea984";
};
propagatedBuildInputs = [
blessed
prefixed
];
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "enlighten" ];
disabledTests =
# https://github.com/Rockhopper-Technologies/enlighten/issues/44
lib.optional stdenv.isDarwin "test_autorefresh"
;
meta = with lib; {
description = "Enlighten Progress Bar for Python Console Apps";
homepage = "https://github.com/Rockhopper-Technologies/enlighten";
license = with licenses; [ mpl20 ];
maintainers = with maintainers; [ veprbl ];
};
}

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@ -0,0 +1,26 @@
{ lib
, buildPythonPackage
, fetchPypi
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "prefixed";
version = "0.3.2";
src = fetchPypi {
inherit pname version;
sha256 = "ca48277ba5fa8346dd4b760847da930c7b84416387c39e93affef086add2c029";
};
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "prefixed" ];
meta = with lib; {
description = "Prefixed alternative numeric library";
homepage = "https://github.com/Rockhopper-Technologies/prefixed";
license = with licenses; [ mpl20 ];
maintainers = with maintainers; [ veprbl ];
};
}

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@ -14351,6 +14351,8 @@ in
todoist-electron = callPackage ../applications/misc/todoist-electron { };
toil = callPackage ../applications/science/misc/toil { };
travis = callPackage ../development/tools/misc/travis { };
tree-sitter = callPackage ../development/tools/parsing/tree-sitter {

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@ -199,6 +199,8 @@ in {
inherit (pkgs.darwin.apple_sdk.frameworks) CoreFoundation Security;
};
addict = callPackage ../development/python-modules/addict { };
addic7ed-cli = callPackage ../development/python-modules/addic7ed-cli { };
adext = callPackage ../development/python-modules/adext { };
@ -2297,6 +2299,8 @@ in {
enamlx = callPackage ../development/python-modules/enamlx { };
enlighten = callPackage ../development/python-modules/enlighten { };
enocean = callPackage ../development/python-modules/enocean { };
enrich = callPackage ../development/python-modules/enrich { };
@ -5544,6 +5548,8 @@ in {
precis-i18n = callPackage ../development/python-modules/precis-i18n { };
prefixed = callPackage ../development/python-modules/prefixed { };
pre-commit = callPackage ../development/python-modules/pre-commit { };
pre-commit-hooks = callPackage ../development/python-modules/pre-commit-hooks { };