Merge pull request #118454 from LeSuisse/hdf5-use-v110-api
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commit
9f7f61b07f
50
pkgs/tools/misc/hdf5/1.10.nix
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50
pkgs/tools/misc/hdf5/1.10.nix
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@ -0,0 +1,50 @@
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{ lib, stdenv
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, fetchurl
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, removeReferencesTo
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, zlib ? null
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, enableShared ? !stdenv.hostPlatform.isStatic
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}:
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let inherit (lib) optional optionals; in
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stdenv.mkDerivation rec {
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version = "1.10.7";
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pname = "hdf5";
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src = fetchurl {
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url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${lib.versions.majorMinor version}/${pname}-${version}/src/${pname}-${version}.tar.bz2";
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sha256 = "0pm5xxry55i0h7wmvc7svzdaa90rnk7h78rrjmnlkz2ygsn8y082";
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};
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outputs = [ "out" "dev" ];
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nativeBuildInputs = [ removeReferencesTo ];
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propagatedBuildInputs = optional (zlib != null) zlib;
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configureFlags = optional enableShared "--enable-shared";
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patches = [
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./bin-mv.patch
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];
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postInstall = ''
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find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
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moveToOutput 'bin/h5cc' "''${!outputDev}"
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moveToOutput 'bin/h5c++' "''${!outputDev}"
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moveToOutput 'bin/h5fc' "''${!outputDev}"
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moveToOutput 'bin/h5pcc' "''${!outputDev}"
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'';
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meta = {
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description = "Data model, library, and file format for storing and managing data";
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longDescription = ''
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HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
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applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
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applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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'';
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license = lib.licenses.bsd3; # Lawrence Berkeley National Labs BSD 3-Clause variant
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homepage = "https://www.hdfgroup.org/HDF5/";
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platforms = lib.platforms.unix;
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};
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}
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@ -10,6 +10,7 @@
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, enableShared ? !stdenv.hostPlatform.isStatic
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, javaSupport ? false
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, jdk
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, usev110Api ? false
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}:
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# cpp and mpi options are mutually exclusive
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@ -50,7 +51,8 @@ stdenv.mkDerivation rec {
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++ optional (szip != null) "--with-szlib=${szip}"
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++ optionals mpiSupport ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
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++ optional enableShared "--enable-shared"
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++ optional javaSupport "--enable-java";
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++ optional javaSupport "--enable-java"
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++ optional usev110Api "--with-default-api-version=v110";
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patches = [
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./bin-mv.patch
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@ -5330,6 +5330,8 @@ in
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szip = null;
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};
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hdf5_1_10 = callPackage ../tools/misc/hdf5/1.10.nix { };
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hdf5-mpi = appendToName "mpi" (hdf5.override {
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szip = null;
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mpiSupport = true;
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@ -17659,7 +17661,9 @@ in
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inherit (llvmPackages) openmp;
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};
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vigra = callPackage ../development/libraries/vigra { };
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vigra = callPackage ../development/libraries/vigra {
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hdf5 = hdf5.override { usev110Api = true; };
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};
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vlock = callPackage ../misc/screensavers/vlock { };
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@ -8149,9 +8149,13 @@ in {
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tableaudocumentapi = callPackage ../development/python-modules/tableaudocumentapi { };
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tables = if isPy3k then
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callPackage ../development/python-modules/tables { }
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callPackage ../development/python-modules/tables {
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hdf5 = pkgs.hdf5_1_10;
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}
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else
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callPackage ../development/python-modules/tables/3.5.nix { };
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callPackage ../development/python-modules/tables/3.5.nix {
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hdf5 = pkgs.hdf5_1_10;
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};
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tablib = callPackage ../development/python-modules/tablib { };
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