diff --git a/lib/maintainers.nix b/lib/maintainers.nix index 9f9234f18a5..1e50e3d93f7 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -55,6 +55,7 @@ antonxy = "Anton Schirg "; apeschar = "Albert Peschar "; apeyroux = "Alexandre Peyroux "; + arcadio = "Arcadio Rubio GarcĂ­a "; ardumont = "Antoine R. Dumont "; aristid = "Aristid Breitkreuz "; arobyn = "Alexei Robyn "; diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix new file mode 100644 index 00000000000..d80ffea9a78 --- /dev/null +++ b/pkgs/applications/science/biology/kallisto/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }: + +stdenv.mkDerivation rec { + name = "kallisto-${version}"; + version = "0.43.1"; + + src = fetchFromGitHub { + repo = "kallisto"; + owner = "pachterlab"; + rev = "v${version}"; + sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ hdf5 zlib ]; + + meta = with stdenv.lib; { + description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; + homepage = https://pachterlab.github.io/kallisto; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = [ maintainers.arcadio ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 6318a56fedf..a771296ba07 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -18932,6 +18932,8 @@ with pkgs; neuron-version = neuron.version; }; + kallisto = callPackage ../applications/science/biology/kallisto { }; + neuron = callPackage ../applications/science/biology/neuron { python = null; };