Merge remote-tracking branch 'upstream/master' into HEAD

This commit is contained in:
Frederik Rietdijk 2018-02-21 20:43:10 +01:00
commit b5391b2451
101 changed files with 6355 additions and 5100 deletions

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@ -99,6 +99,11 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec {
fullName = ''BSD 4-clause "Original" or "Old" License'';
};
clArtistic = spdx {
spdxId = "ClArtistic";
fullName = "Clarified Artistic License";
};
cc0 = spdx {
spdxId = "CC0-1.0";
fullName = "Creative Commons Zero v1.0 Universal";

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@ -765,6 +765,7 @@
wscott = "Wayne Scott <wsc9tt@gmail.com>";
wyvie = "Elijah Rum <elijahrum@gmail.com>";
xaverdh = "Dominik Xaver Hörl <hoe.dom@gmx.de>";
xeji = "xeji <xeji@cat3.de>";
xnwdd = "Guillermo NWDD <nwdd+nixos@no.team>";
xurei = "Olivier Bourdoux <olivier.bourdoux@gmail.com>";
xvapx = "Marti Serra <marti.serra.coscollano@gmail.com>";

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@ -246,6 +246,7 @@
./services/hardware/pcscd.nix
./services/hardware/pommed.nix
./services/hardware/sane.nix
./services/hardware/sane_extra_backends/brscan4.nix
./services/hardware/tcsd.nix
./services/hardware/tlp.nix
./services/hardware/thinkfan.nix
@ -342,6 +343,7 @@
./services/misc/nix-optimise.nix
./services/misc/nixos-manual.nix
./services/misc/nix-ssh-serve.nix
./services/misc/novacomd.nix
./services/misc/nzbget.nix
./services/misc/octoprint.nix
./services/misc/osrm.nix

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@ -0,0 +1,31 @@
{ config, lib, pkgs, ... }:
with lib;
let
cfg = config.services.novacomd;
in {
options = {
services.novacomd = {
enable = mkEnableOption "Novacom service for connecting to WebOS devices";
};
};
config = mkIf cfg.enable {
environment.systemPackages = [ pkgs.webos.novacom ];
systemd.services.novacomd = {
description = "Novacom WebOS daemon";
wantedBy = [ "multi-user.target" ];
serviceConfig = {
ExecStart = "${pkgs.webos.novacomd}/sbin/novacomd";
};
};
};
meta.maintainers = with maintainers; [ dtzWill ];
}

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@ -318,6 +318,7 @@ in rec {
tests.nfs4 = callTest tests/nfs.nix { version = 4; };
tests.nginx = callTest tests/nginx.nix { };
tests.nghttpx = callTest tests/nghttpx.nix { };
tests.novacomd = callTestOnTheseSystems ["x86_64-linux"] tests/novacomd.nix { };
tests.leaps = callTest tests/leaps.nix { };
tests.nsd = callTest tests/nsd.nix {};
tests.openssh = callTest tests/openssh.nix {};
@ -329,6 +330,7 @@ in rec {
tests.postgresql = callSubTests tests/postgresql.nix {};
tests.pgmanage = callTest tests/pgmanage.nix {};
tests.postgis = callTest tests/postgis.nix {};
tests.powerdns = callTest tests/powerdns.nix {};
#tests.pgjwt = callTest tests/pgjwt.nix {};
tests.predictable-interface-names = callSubTests tests/predictable-interface-names.nix {};
tests.printing = callTest tests/printing.nix {};

28
nixos/tests/novacomd.nix Normal file
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@ -0,0 +1,28 @@
import ./make-test.nix ({ pkgs, ...} : {
name = "novacomd";
meta = with pkgs.stdenv.lib.maintainers; {
maintainers = [ dtzWill ];
};
machine = { config, pkgs, ... }: {
services.novacomd.enable = true;
};
testScript = ''
startAll;
$machine->waitForUnit("novacomd.service");
# Check status and try connecting with novacom
$machine->succeed("systemctl status novacomd.service >&2");
$machine->succeed("novacom -l");
# Stop the daemon, double-check novacom fails if daemon isn't working
$machine->stopJob("novacomd");
$machine->fail("novacom -l");
# And back again for good measure
$machine->startJob("novacomd");
$machine->succeed("novacom -l");
'';
})

12
nixos/tests/powerdns.nix Normal file
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@ -0,0 +1,12 @@
import ./make-test.nix ({ pkgs, ... }: {
name = "powerdns";
nodes.server = { config, pkgs, ... }: {
services.powerdns.enable = true;
};
testScript = ''
$server->waitForUnit("pdns");
$server->succeed("${pkgs.dnsutils}/bin/dig version.bind txt chaos \@127.0.0.1");
'';
})

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@ -5,7 +5,7 @@
python3Packages.buildPythonApplication rec {
name = "gpodder-${version}";
version = "3.10.0";
version = "3.10.1";
format = "other";
@ -13,7 +13,7 @@ python3Packages.buildPythonApplication rec {
owner = "gpodder";
repo = "gpodder";
rev = version;
sha256 = "0f3m1kcj641xiwsxan66k81lvslkl3aziakn5z17y4mmdci79jv0";
sha256 = "1cqhm5h0kkdb2m691dbj8i3bixl7bw0iww2pl6k1jkz8mgafyd9d";
};
postPatch = with stdenv.lib; ''
@ -26,7 +26,11 @@ python3Packages.buildPythonApplication rec {
glibcLocales
];
buildInputs = [ python3 gobjectIntrospection ];
buildInputs = [
python3
gobjectIntrospection
gnome3.defaultIconTheme
];
checkInputs = with python3Packages; [
coverage minimock

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@ -1,11 +1,11 @@
{ stdenv, fetchurl, libmikmod, ncurses, alsaLib }:
stdenv.mkDerivation rec {
name = "mikmod-3.2.6";
name = "mikmod-3.2.8";
src = fetchurl {
url = "mirror://sourceforge/mikmod/${name}.tar.gz";
sha256 = "0wr61raj10rpl64mk3x9g3rwys898fbzyg93c6mrz89nvc74wm04";
sha256 = "1k54p8pn3jinha0f2i23ad15pf1pamibzcxjrbzjbklpcz1ipc6v";
};
buildInputs = [ libmikmod ncurses ];

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@ -0,0 +1,50 @@
{ fetchFromGitHub, stdenv, pythonPackages
, mp3Support ? true, lame ? null
, opusSupport ? true, opusTools ? null
, faacSupport ? false, faac ? null
, flacSupport ? true, flac ? null
, soxSupport ? true, sox ? null
, vorbisSupport ? true, vorbisTools ? null
}:
assert mp3Support -> lame != null;
assert opusSupport -> opusTools != null;
assert faacSupport -> faac != null;
assert flacSupport -> flac != null;
assert soxSupport -> sox != null;
assert vorbisSupport -> vorbisTools != null;
pythonPackages.buildPythonApplication rec {
pname = "pulseaudio-dlna";
version = "2017-11-01";
src = fetchFromGitHub {
owner = "masmu";
repo = "pulseaudio-dlna";
rev = "4472928dd23f274193f14289f59daec411023ab0";
sha256 = "1dfn7036vrq49kxv4an7rayypnm5dlawsf02pfsldw877hzdamqk";
};
# pulseaudio-dlna has no tests
doCheck = false;
propagatedBuildInputs = with pythonPackages; [
dbus-python docopt requests setproctitle protobuf psutil futures
chardet notify2 netifaces pyroute2 pygobject2 lxml zeroconf ]
++ stdenv.lib.optional mp3Support lame
++ stdenv.lib.optional opusSupport opusTools
++ stdenv.lib.optional faacSupport faac
++ stdenv.lib.optional flacSupport flac
++ stdenv.lib.optional soxSupport sox
++ stdenv.lib.optional vorbisSupport vorbisTools;
meta = with stdenv.lib; {
description = "A lightweight streaming server which brings DLNA / UPNP and Chromecast support to PulseAudio and Linux";
homepage = https://github.com/masmu/pulseaudio-dlna;
license = licenses.gpl3Plus;
maintainers = with maintainers; [ mog ];
platforms = platforms.linux;
};
}

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@ -96,7 +96,8 @@ stdenv.mkDerivation rec {
description = "An online backup solution";
homepage = http://www.crashplan.com/business/;
license = licenses.unfree;
platforms = [ "x86_64-linux" ];
maintainers = with maintainers; [ xvapx ];
};
}
}

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@ -1,17 +1,17 @@
{ stdenv, fetchurl } :
stdenv.mkDerivation rec {
version = "4.4";
version = "4.6";
name = "joe-${version}";
src = fetchurl {
url = "mirror://sourceforge/joe-editor/${name}.tar.gz";
sha256 = "0y898r1xlrv75m00y598rvwwsricabplyh80wawsqafapcl4hw55";
sha256 = "1pmr598xxxm9j9dl93kq4dv36zyw0q2dh6d7x07hf134y9hhlnj9";
};
meta = with stdenv.lib; {
description = "A full featured terminal-based screen editor";
homepage = http://joe-editor.sourceforge.net;
homepage = https://joe-editor.sourceforge.io;
license = licenses.gpl2;
platforms = platforms.unix;
};

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@ -1,14 +1,14 @@
{ stdenv, python3, fetchFromGitHub }:
with python3.pkgs; buildPythonApplication rec {
version = "3.4";
version = "3.6";
name = "buku-${version}";
src = fetchFromGitHub {
owner = "jarun";
repo = "buku";
rev = "v${version}";
sha256 = "0v0wvsxw78g6yl606if25k1adghr5764chwy1kl7dsxvchqwvmg0";
sha256 = "1639sf200n9rxgkvvhlhnrjsb7vn42p1fl1rx562axh3vpr6j4c4";
};
nativeBuildInputs = [
@ -33,7 +33,9 @@ with python3.pkgs; buildPythonApplication rec {
# Disables a test which requires internet
substituteInPlace tests/test_bukuDb.py \
--replace "@pytest.mark.slowtest" "@unittest.skip('skipping')"
--replace "@pytest.mark.slowtest" "@unittest.skip('skipping')" \
--replace "self.assertEqual(shorturl, 'http://tny.im/yt')" "" \
--replace "self.assertEqual(url, 'https://www.google.com')" ""
'';
installPhase = ''

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@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
pythonEnv = python3Packages.python.buildEnv.override {
extraLibs = [ python3Packages.httplib2 ];
};
propogatedBuildInputs = [ pythonEnv ];
propagatedBuildInputs = [ pythonEnv ];
postInstall = ''
substituteInPlace $out/bin/calcurse-caldav --replace /usr/bin/python3 ${pythonEnv}/bin/python3

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@ -5,12 +5,12 @@
}:
stdenv.mkDerivation rec {
version = "3.16.0";
version = "3.17.0";
name = "calibre-${version}";
src = fetchurl {
url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz";
sha256 = "0dsnn974lfd6xbnyjhgxl2hd07kjhm1w9plqi28mx8nqa8bwqira";
sha256 = "1w6hw1s0d4daa4q2ykzhxdndiq61l8z7ls7rxh7k7p62ia0i5sxp";
};
patches = [

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@ -20,6 +20,8 @@ buildPythonApplication rec {
six
];
doCheck = false;
checkInputs = [ mock ];
checkPhase = ''

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@ -1,15 +1,12 @@
{ stdenv, fetchurl, readline, ncurses }:
let
version = "1.23";
in
stdenv.mkDerivation rec {
name = "hstr-${version}";
name = "hstr-${version}";
version = "1.24";
src = fetchurl {
url = "https://github.com/dvorka/hstr/releases/download/${version}/hh-${version}-src.tgz";
sha256 = "1hnira256p7sdilx34mnkji7gi2jcl98zz4izqxsqmnzj8ghhzkv";
sha256 = "0w8is777fwq6r17zhl9xwrv9f7vanllzjiasx1pg6pxvppq7rh0x";
};
buildInputs = [ readline ncurses ];

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@ -1,13 +1,13 @@
{ stdenv, fetchurl, fetchFromGitHub, glibcLocales, python3Packages }:
python3Packages.buildPythonApplication rec {
version = "0.11.4";
version = "0.12.2";
name = "khard-${version}";
namePrefix = "";
src = fetchurl {
url = "https://github.com/scheibler/khard/archive/v${version}.tar.gz";
sha256 = "1hngg3z5cdjny7wdf2mf9wv35ffx7ivpq6mx7kgqf40fr5905l0r";
sha256 = "0lxcvzmafpvqcifgq2xjh1ca07z0vhihn5jnw8zrpmsqdc9p6b4j";
};
# setup.py reads the UTF-8 encoded readme.
@ -19,7 +19,9 @@ python3Packages.buildPythonApplication rec {
configobj
vobject
argparse
pyyaml
ruamel_yaml
ruamel_base
unidecode
];
# Fails; but there are no tests anyway.

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@ -26,6 +26,6 @@ buildGoPackage rec {
homepage = https://github.com/McKael/madonctl;
license = licenses.mit;
platforms = platforms.unix;
maintainers = with maintainers; [ matthiasbeyer ];
maintainers = with maintainers; [ ];
};
}

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@ -1,12 +1,12 @@
{ stdenv, fetchurl, pythonPackages }:
stdenv.mkDerivation rec {
version = "0.7.3";
version = "0.7.4";
name = "mwic-${version}";
src = fetchurl {
url = "https://github.com/jwilk/mwic/releases/download/${version}/${name}.tar.gz";
sha256 = "0baa2pnaba954k169p9rpzc66mhz9zqdd3lz9q95rp9dgygvchzn";
sha256 = "0c0xk7wx4vaamlry6srdixw1q6afmqznvxdzcg1skr0qjypw5i5q";
};
makeFlags=["PREFIX=\${out}"];

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@ -4,13 +4,13 @@ with stdenv.lib;
stdenv.mkDerivation rec {
name = "nnn-${version}";
version = "1.5";
version = "1.6";
src = fetchFromGitHub {
owner = "jarun";
repo = "nnn";
rev = "v${version}";
sha256 = "10gcbklh0cp12293lzlwcplj0in90p95x4fyvg1smg4cxamkibvn";
sha256 = "1yl4k39wkh2ins7fz585kc4cg6fagiswgqkh5g36db1bka3v1kn0";
};
configFile = optionalString (conf!=null) (builtins.toFile "nnn.h" conf);

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@ -1,14 +1,14 @@
{ stdenv, fetchFromGitHub, yacc, ncurses, libxml2, libzip, libxls, pkgconfig }:
stdenv.mkDerivation rec {
version = "0.6.0";
version = "0.7.0";
name = "sc-im-${version}";
src = fetchFromGitHub {
owner = "andmarti1424";
repo = "sc-im";
rev = "v${version}";
sha256 = "02ak3b0vv72mv38cwvy7qp0y6hgrzcgahkv1apgks3drpnz5w1sj";
sha256 = "0xi0n9qzby012y2j7hg4fgcwyly698sfi4i9gkvy0q682jihprbk";
};
nativeBuildInputs = [ pkgconfig ];
@ -17,6 +17,8 @@ stdenv.mkDerivation rec {
buildPhase = ''
cd src
sed 's/LDLIBS += -lm/& -lncurses/' -i Makefile
sed -e "\|^prefix = /usr/local| s|/usr/local|$out|" \
-e "\|^#LDLIBS += -lxlsreader| s|^#|| " \
-e "\|^#CFLAGS += -DXLS| s|^#|| " \

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@ -1,12 +1,12 @@
{ lib, buildPythonApplication, fetchPypi, pythonPackages }:
buildPythonApplication rec {
version = "1.3.0";
version = "1.4.0";
pname = "sigal";
src = fetchPypi {
inherit version pname;
sha256 = "0ycyrap4rc0yrjagi5c5fs5gpw9whvkli656syfpj99dq1q9q1d0";
sha256 = "0da0n8jhjp2swr18zga87xc77r8c7qwqf5sp222ph9sn3yyyc35i";
};
buildInputs = with pythonPackages; [ pytest ];

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@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
name = "timewarrior-${version}";
version = "1.1.0";
version = "1.1.1";
enableParallelBuilding = true;
src = fetchurl {
url = "https://taskwarrior.org/download/timew-${version}.tar.gz";
sha256 = "0jnwj8lflr6nlch2j2hkmgpdqq3zbdd2sfpi5iwiabljk25v9iq9";
sha256 = "1jfcfzdwk5qqhxznj1bgy0sx3lnp3z5lqr9kch9a7iazwmi9lz8z";
};
nativeBuildInputs = [ cmake ];
@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
description = "A command-line time tracker";
homepage = https://tasktools.org/projects/timewarrior.html;
license = licenses.mit;
maintainers = with maintainers; [ matthiasbeyer ];
maintainers = with maintainers; [ matthiasbeyer mrVanDalo ];
platforms = platforms.linux;
};
}

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@ -13,13 +13,13 @@
}:
stdenv.mkDerivation rec {
name = "dino-unstable-2017-12-03";
name = "dino-unstable-2018-02-11";
src = fetchFromGitHub {
owner = "dino";
repo = "dino";
rev = "cee39b0117c1620d852d50c14ca6f06db4e2956b";
sha256 = "15cm6y2rgj6fcw8sciygd1wvcw7k9fgf69ji1abfwybzydflj7ny";
rev = "5436d716c0f508eb8ab70f322da862f996ce421e";
sha256 = "0yxkhl9xm5f0j2i9vxgyabpa5fwja0329fmg0878mqsm89nzz3am";
fetchSubmodules = true;
};

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@ -10,11 +10,11 @@ with stdenv.lib;
stdenv.mkDerivation rec {
name = "qbittorrent-${version}";
version = "4.0.3";
version = "4.0.4";
src = fetchurl {
url = "mirror://sourceforge/qbittorrent/${name}.tar.xz";
sha256 = "1lkbrvpzdfbqwilj09a9vraai7pz6dh999w4vl51mj1adm7bh0ws";
sha256 = "13sw0sdw2agm49plp9xvkg6wva274drpvgz76dqj4j2kfxx9s2jk";
};
nativeBuildInputs = [ pkgconfig which ];

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@ -1,13 +1,13 @@
{ stdenv, fetchFromGitHub, python3Packages }:
stdenv.mkDerivation rec {
name = "bean-add-2017-10-31";
name = "bean-add-2018-01-08";
src = fetchFromGitHub {
owner = "simon-v";
repo = "bean-add";
rev = "9ac64272a17e76f8292bd94deb5aee45c14130d2";
sha256 = "1vcwbbi2jsf87yq8f2hyf7nz9br1973sb20qjnsx5fxlmcpn47jh";
rev = "660c657f295b019d8dbc26375924eb17bf654341";
sha256 = "0vzff2hdng8ybwd5frflhxpak0yqg0985p1dy7vpvhr8kbqqzwdz";
};
propagatedBuildInputs = with python3Packages; [ python ];

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@ -16,13 +16,13 @@
stdenv.mkDerivation rec {
name = "spice-up-${version}";
version = "1.2.1";
version = "1.3.2";
src = fetchFromGitHub {
owner = "Philip-Scott";
repo = "Spice-up";
rev = version;
sha256 = "0cbyhi6d99blv33183j6nakzcqxz5hqy9ijykiasbmdycfd5q0fh";
sha256 = "087cdi7na93pgz7vf046h94v5ydvpiccpwhllq85ix8g4pa5rp85";
};
USER = "nix-build-user";

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@ -0,0 +1,33 @@
{ stdenv, fetchFromGitHub, python3Packages }:
with stdenv.lib;
stdenv.mkDerivation rec {
name = "bcal-${version}";
version = "1.7";
src = fetchFromGitHub {
owner = "jarun";
repo = "bcal";
rev = "v${version}";
sha256 = "08cqp2jysvy743gmwpzkbqhybsb49n65r63z3if53m3y59qg4aw8";
};
nativeBuildInputs = [ python3Packages.pytest ];
doCheck = true;
checkPhase = ''
python3 -m pytest test.py
'';
makeFlags = [ "CC=cc" ];
installFlags = [ "DESTDIR=$(out)" "PREFIX=" ];
meta = {
description = "Storage conversion and expression calculator";
homepage = https://github.com/jarun/bcal;
license = licenses.gpl3;
platforms = [ "x86_64-darwin" "x86_64-linux" ];
maintainers = with maintainers; [ jfrankenau ];
};
}

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@ -0,0 +1,78 @@
{ stdenv, bazel }:
args@{ name, bazelFlags ? [], bazelTarget, buildAttrs, fetchAttrs, ... }:
let
fArgs = removeAttrs args [ "buildAttrs" "fetchAttrs" ];
fBuildAttrs = fArgs // buildAttrs;
fFetchAttrs = fArgs // removeAttrs fetchAttrs [ "sha256" ];
in stdenv.mkDerivation (fBuildAttrs // {
inherit name bazelFlags bazelTarget;
deps = stdenv.mkDerivation (fFetchAttrs // {
name = "${name}-deps";
inherit bazelFlags bazelTarget;
nativeBuildInputs = fFetchAttrs.nativeBuildInputs or [] ++ [ bazel ];
preHook = fFetchAttrs.preHook or "" + ''
export bazelOut="$NIX_BUILD_TOP/output"
export HOME="$NIX_BUILD_TOP"
'';
buildPhase = fFetchAttrs.buildPhase or ''
runHook preBuild
bazel --output_base="$bazelOut" fetch $bazelFlags $bazelTarget
runHook postBuild
'';
installPhase = fFetchAttrs.installPhase or ''
runHook preInstall
# Patching markers to make them deterministic
for i in $bazelOut/external/\@*.marker; do
sed -i 's, -\?[0-9][0-9]*$, 1,' "$i"
done
# Patching symlinks to remove build directory reference
find $bazelOut/external -type l | while read symlink; do
ln -sf $(readlink "$symlink" | sed "s,$NIX_BUILD_TOP,NIX_BUILD_TOP,") "$symlink"
done
cp -r $bazelOut/external $out
runHook postInstall
'';
dontFixup = true;
outputHashMode = "recursive";
outputHashAlgo = "sha256";
outputHash = fetchAttrs.sha256;
});
nativeBuildInputs = fBuildAttrs.nativeBuildInputs or [] ++ [ (bazel.override { enableNixHacks = true; }) ];
preHook = fBuildAttrs.preHook or "" + ''
export bazelOut="$NIX_BUILD_TOP/output"
export HOME="$NIX_BUILD_TOP"
'';
preConfigure = ''
mkdir -p $bazelOut/external
cp -r $deps/* $bazelOut/external
chmod -R +w $bazelOut
find $bazelOut -type l | while read symlink; do
ln -sf $(readlink "$symlink" | sed "s,NIX_BUILD_TOP,$NIX_BUILD_TOP,") "$symlink"
done
'' + fBuildAttrs.preConfigure or "";
buildPhase = fBuildAttrs.buildPhase or ''
runHook preBuild
bazel --output_base="$bazelOut" build -j $NIX_BUILD_CORES $bazelFlags $bazelTarget
runHook postBuild
'';
})

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@ -0,0 +1,27 @@
{ stdenv, fetchFromGitHub }:
stdenv.mkDerivation rec {
name = "gnome-shell-extension-battery-status-${version}";
version = "6";
src = fetchFromGitHub {
owner = "milliburn";
repo = "gnome-shell-extension-battery_status";
rev = "v${version}";
sha256 = "1w83h863mzffjnmk322xq90qf3y9dzay1w9yw5r0qnbsq1ljl8p4";
};
uuid = "battery_status@milliburn.github.com";
installPhase = ''
mkdir -p $out/share/gnome-shell/extensions
cp -r ${uuid} $out/share/gnome-shell/extensions/
'';
meta = with stdenv.lib; {
description = "Configurable lightweight battery charge indicator and autohider";
license = licenses.gpl2;
maintainers = with maintainers; [ jonafato ];
homepage = https://github.com/milliburn/gnome-shell-extension-battery_status;
};
}

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@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
name = "gnome-shell-dash-to-dock-${version}";
version = "v61";
version = "v62";
src = fetchFromGitHub {
owner = "micheleg";
repo = "dash-to-dock";
rev = "extensions.gnome.org-" + version;
sha256 = "152xzhal3wr40j0pv03v0gg20054n5hqqy3s10bkj2a0x830pgjk";
sha256 = "1kmf7vxhd1c1zgaim1pwmcmsg0kffng7hcl5gfcy5qb5yvb4dy5d";
};
nativeBuildInputs = [

View file

@ -0,0 +1,43 @@
{ stdenv, substituteAll, fetchFromGitHub, taskwarrior }:
stdenv.mkDerivation rec {
name = "gnome-shell-extension-taskwhisperer-${version}";
version = "11";
src = fetchFromGitHub {
owner = "cinatic";
repo = "taskwhisperer";
rev = "v${version}";
sha256 = "1g1301rwnfg5jci78bjpmgxrn78ra80m1zp2inhfsm8jssr1i426";
};
buildInputs = [ taskwarrior ];
uuid = "taskwhisperer-extension@infinicode.de";
installPhase = ''
mkdir -p $out/share/gnome-shell/extensions/${uuid}
cp *.js $out/share/gnome-shell/extensions/${uuid}
cp -r extra $out/share/gnome-shell/extensions/${uuid}
cp -r icons $out/share/gnome-shell/extensions/${uuid}
cp -r locale $out/share/gnome-shell/extensions/${uuid}
cp -r schemas $out/share/gnome-shell/extensions/${uuid}
cp metadata.json $out/share/gnome-shell/extensions/${uuid}
cp settings.ui $out/share/gnome-shell/extensions/${uuid}
cp stylesheet.css $out/share/gnome-shell/extensions/${uuid}
'';
patches = [
(substituteAll {
src = ./fix-paths.patch;
task = "${taskwarrior}/bin/task";
})
];
meta = with stdenv.lib; {
description = "GNOME Shell TaskWarrior GUI";
license = licenses.gpl3Plus;
maintainers = with maintainers; [ jonafato ];
homepage = https://github.com/cinatic/taskwhisperer;
};
}

View file

@ -0,0 +1,81 @@
diff --git a/extra/create.sh b/extra/create.sh
index a69e369..35d5ea1 100755
--- a/extra/create.sh
+++ b/extra/create.sh
@@ -1 +1 @@
-bash -c "task add $1"
+bash -c "@task@ add $1"
diff --git a/extra/modify.sh b/extra/modify.sh
index 7964a26..8edd21b 100755
--- a/extra/modify.sh
+++ b/extra/modify.sh
@@ -1 +1 @@
-bash -c "task $1 modify $2"
+bash -c "@task@ $1 modify $2"
diff --git a/taskService.js b/taskService.js
index dea40d8..ff35a80 100644
--- a/taskService.js
+++ b/taskService.js
@@ -186,7 +186,7 @@ const TaskService = new Lang.Class({
let project = projectName ? "project:" + projectName : "";
- let command = ['task', 'rc.json.array=on', status, project, 'export'];
+ let command = ['@task@', 'rc.json.array=on', status, project, 'export'];
let reader = new SpawnReader.SpawnReader();
let buffer = "";
@@ -227,7 +227,7 @@ const TaskService = new Lang.Class({
break;
}
- let shellProc = Gio.Subprocess.new(['task', status, 'projects'], Gio.SubprocessFlags.STDOUT_PIPE);
+ let shellProc = Gio.Subprocess.new(['@task@', status, 'projects'], Gio.SubprocessFlags.STDOUT_PIPE);
shellProc.wait_async(null, function(obj, result){
let shellProcExited = true;
@@ -274,7 +274,7 @@ const TaskService = new Lang.Class({
return;
}
- let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'done'], Gio.SubprocessFlags.STDOUT_PIPE);
+ let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'done'], Gio.SubprocessFlags.STDOUT_PIPE);
shellProc.wait_async(null, function(obj, result){
let shellProcExited = true;
@@ -307,7 +307,7 @@ const TaskService = new Lang.Class({
return;
}
- let shellProc = Gio.Subprocess.new(['task', 'modify', taskID.toString(), 'status:pending'], Gio.SubprocessFlags.STDOUT_PIPE);
+ let shellProc = Gio.Subprocess.new(['@task@', 'modify', taskID.toString(), 'status:pending'], Gio.SubprocessFlags.STDOUT_PIPE);
shellProc.wait_async(null, function(obj, result){
let shellProcExited = true;
@@ -339,7 +339,7 @@ const TaskService = new Lang.Class({
{
return;
}
- let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'start'], Gio.SubprocessFlags.STDOUT_PIPE);
+ let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'start'], Gio.SubprocessFlags.STDOUT_PIPE);
shellProc.wait_async(null, function(obj, result){
let shellProcExited = true;
shellProc.wait_finish(result);
@@ -369,7 +369,7 @@ const TaskService = new Lang.Class({
{
return;
}
- let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'stop'], Gio.SubprocessFlags.STDOUT_PIPE);
+ let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'stop'], Gio.SubprocessFlags.STDOUT_PIPE);
shellProc.wait_async(null, function(obj, result){
let shellProcExited = true;
shellProc.wait_finish(result);
@@ -468,7 +468,7 @@ const TaskService = new Lang.Class({
try
{
- shellProc = Gio.Subprocess.new(['task', 'sync'], Gio.SubprocessFlags.STDOUT_PIPE);
+ shellProc = Gio.Subprocess.new(['@task@', 'sync'], Gio.SubprocessFlags.STDOUT_PIPE);
}
catch(err)
{

View file

@ -1 +1 @@
WGET_ARGS=( https://download.kde.org/stable/plasma/5.12.1/ -A '*.tar.xz' )
WGET_ARGS=( https://download.kde.org/stable/plasma/5.12.2/ -A '*.tar.xz' )

View file

@ -3,355 +3,355 @@
{
bluedevil = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/bluedevil-5.12.1.tar.xz";
sha256 = "0qdqbykphala7np333l3a0r94nrd8zg2dh7iqw6k7mc1mxkh92b7";
name = "bluedevil-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/bluedevil-5.12.2.tar.xz";
sha256 = "11xwyawcfkxhdzcgj4nkj1vlp6zn53k9dl3c4llpj1z08jc2vdpj";
name = "bluedevil-5.12.2.tar.xz";
};
};
breeze = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/breeze-5.12.1.tar.xz";
sha256 = "0hi3z4jrs6a0sm58726v6v0hvb0v313qihi06mm6fayiijh0s5zs";
name = "breeze-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/breeze-5.12.2.tar.xz";
sha256 = "1vx03wi4m6ly6sw7cznhzg96rkxbn2mxsn9719pra616axl6c00s";
name = "breeze-5.12.2.tar.xz";
};
};
breeze-grub = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/breeze-grub-5.12.1.tar.xz";
sha256 = "0i7w9i2m9sxywag46dhr22ksw9zb2cjm6vk2019m3kpg9pq8yx68";
name = "breeze-grub-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/breeze-grub-5.12.2.tar.xz";
sha256 = "1a76xbnrbd18cd6p0n94fixc7jmd8vdnzqbi9pbi3wj82cpp95xq";
name = "breeze-grub-5.12.2.tar.xz";
};
};
breeze-gtk = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/breeze-gtk-5.12.1.tar.xz";
sha256 = "0bal2zf2xg32hxbabf4kzlm2lhir9sn67nfzrf9zb0hb0b7ya01d";
name = "breeze-gtk-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/breeze-gtk-5.12.2.tar.xz";
sha256 = "1811r8gqhrdf5b4a1k94cid1whcd8g6h2mrms6qm40brzj8qn9w0";
name = "breeze-gtk-5.12.2.tar.xz";
};
};
breeze-plymouth = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/breeze-plymouth-5.12.1.tar.xz";
sha256 = "0535igi9ms4dyz25sygkrmg310s90vy3srx5qdrdzfinah5m8qz7";
name = "breeze-plymouth-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/breeze-plymouth-5.12.2.tar.xz";
sha256 = "1n96iysljakhhkw9wavhbvj29zlkkajgwpxs6v5ny4iifv9gn3cv";
name = "breeze-plymouth-5.12.2.tar.xz";
};
};
discover = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/discover-5.12.1.tar.xz";
sha256 = "07jdx01qz9339w652ixk0hjb25s1bf4rc5gs872i0hv77vxy161b";
name = "discover-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/discover-5.12.2.tar.xz";
sha256 = "1hkbannyrw1c6h45c8s669d4hg6irc991hjlg0mm31lnpa8lb51v";
name = "discover-5.12.2.tar.xz";
};
};
drkonqi = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/drkonqi-5.12.1.tar.xz";
sha256 = "056qqhp8jh2v9jrghdb2n2ljq3s4vyrfdfligkvxvviwrd1r3wyk";
name = "drkonqi-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/drkonqi-5.12.2.tar.xz";
sha256 = "0dw9axkhp0cgw276cpfp4ddf5g9s2ccz6q43pk68fvphbz7m2wqm";
name = "drkonqi-5.12.2.tar.xz";
};
};
kactivitymanagerd = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kactivitymanagerd-5.12.1.tar.xz";
sha256 = "0hfkcy27mpick1sfwvw4x6323bsq9ks2ac066560wm5xy6svhmid";
name = "kactivitymanagerd-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kactivitymanagerd-5.12.2.tar.xz";
sha256 = "1l6ar094y272fjxzj6qpapz4g5mfbf82z80zygmrs0cizpz1xv84";
name = "kactivitymanagerd-5.12.2.tar.xz";
};
};
kde-cli-tools = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kde-cli-tools-5.12.1.tar.xz";
sha256 = "0l6bky92j1hpgn4ikfxwrpsrcvx673g8vk2n3lff1cyy4j0ayg6v";
name = "kde-cli-tools-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kde-cli-tools-5.12.2.tar.xz";
sha256 = "1jd7r49i24psrx59n0djbbxbv8c3wchiabgrv4x4dq6nsqygh6vc";
name = "kde-cli-tools-5.12.2.tar.xz";
};
};
kdecoration = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kdecoration-5.12.1.tar.xz";
sha256 = "08x87kcgphb1jknyp3fsimgb2al919s039kkhimijmm0n1z16fiy";
name = "kdecoration-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kdecoration-5.12.2.tar.xz";
sha256 = "1whngfld0nlw3mbf70khvqiqqskfglnn3dzx5zg0l14xv0kips79";
name = "kdecoration-5.12.2.tar.xz";
};
};
kde-gtk-config = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kde-gtk-config-5.12.1.tar.xz";
sha256 = "1a10nxivnfnm9634z98r6jgp887vf1zynyp9hi75pw9jbm4zf1kw";
name = "kde-gtk-config-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kde-gtk-config-5.12.2.tar.xz";
sha256 = "1ncyj665hra8bj4nk2idpjq0lm72dr3r467ddx6k0n63arvfmxm4";
name = "kde-gtk-config-5.12.2.tar.xz";
};
};
kdeplasma-addons = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kdeplasma-addons-5.12.1.tar.xz";
sha256 = "123daj7q8jgw6zsq9c0mdd28qf9r20hlbzs71zz48r7736njaw98";
name = "kdeplasma-addons-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kdeplasma-addons-5.12.2.tar.xz";
sha256 = "00x0jd8jw77fh5qy5z9xldw3m27il9mamq0fl8f4vmny7y8hqg2k";
name = "kdeplasma-addons-5.12.2.tar.xz";
};
};
kgamma5 = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kgamma5-5.12.1.tar.xz";
sha256 = "0cgkrc4b0x50ih4x0zfvcydnhqryd37d5sqj3p0k3b6p2r9mnqkb";
name = "kgamma5-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kgamma5-5.12.2.tar.xz";
sha256 = "1xhn8dw0595f48qbvj304agkg34y2pr0czvkpl1ahhzsndgjkxjs";
name = "kgamma5-5.12.2.tar.xz";
};
};
khotkeys = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/khotkeys-5.12.1.tar.xz";
sha256 = "1acjg51ikp9gdabdjbg6i9znxrfs11md9zhi7rls9b5p06l38ckj";
name = "khotkeys-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/khotkeys-5.12.2.tar.xz";
sha256 = "1hsnasx67vf0jdxnmlvhm86ykvjc89zbr8rdgr1ixq6iy543c1ry";
name = "khotkeys-5.12.2.tar.xz";
};
};
kinfocenter = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kinfocenter-5.12.1.tar.xz";
sha256 = "1wb7gag22ssaril3rl5r3y62rszvihrr4y1ph7nmhrg14sifg16k";
name = "kinfocenter-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kinfocenter-5.12.2.tar.xz";
sha256 = "0sagy72x94nv1zxvllkzgmln2j04bh8cib4fx3zsqfn572wncjqi";
name = "kinfocenter-5.12.2.tar.xz";
};
};
kmenuedit = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kmenuedit-5.12.1.tar.xz";
sha256 = "13liv9qj8h4b17h8864bhxqahjwaz7bbh1gx53mhkbn59g5kh39d";
name = "kmenuedit-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kmenuedit-5.12.2.tar.xz";
sha256 = "1ygwv1s9zgd6qh3gd7537dgjil8h3i21i5wwn99wynbifq0w6ikv";
name = "kmenuedit-5.12.2.tar.xz";
};
};
kscreen = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kscreen-5.12.1.tar.xz";
sha256 = "18v0gzv4j9w0jyf05ibi5iwmw1wp231q7hi098sps614hz38zmh2";
name = "kscreen-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kscreen-5.12.2.tar.xz";
sha256 = "1scmaydn4fypjizfm7l71vszx725vgbgsg7hpnv2dgwqrf98kl9v";
name = "kscreen-5.12.2.tar.xz";
};
};
kscreenlocker = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kscreenlocker-5.12.1.tar.xz";
sha256 = "1s3k51k05g3nhq1c32631ryr754zk40fnrw4zi2x69bvx3mj40hq";
name = "kscreenlocker-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kscreenlocker-5.12.2.tar.xz";
sha256 = "0v8qyjkmaxq711dw1iw12j38aswfr4qccvzkm3qc1gvfjs1vl0gn";
name = "kscreenlocker-5.12.2.tar.xz";
};
};
ksshaskpass = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/ksshaskpass-5.12.1.tar.xz";
sha256 = "1zj7ka6wfisjbx7lbpw7acjdgr590596zgy4al7if4rznva1zsh7";
name = "ksshaskpass-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/ksshaskpass-5.12.2.tar.xz";
sha256 = "1b70jbdm3c4agk66v5yvzvzdlwp0xn8lmxn3zyk1n280xgqr2z1m";
name = "ksshaskpass-5.12.2.tar.xz";
};
};
ksysguard = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/ksysguard-5.12.1.tar.xz";
sha256 = "1dh84wzn1iyc59yvzqjah16rp05wl6cf3lgiiycza09d9k4m0j5m";
name = "ksysguard-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/ksysguard-5.12.2.tar.xz";
sha256 = "0k8ziqbvm8igczij3a26jyc0i7hwiqfv0072kywz76m9pfsd3lp7";
name = "ksysguard-5.12.2.tar.xz";
};
};
kwallet-pam = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kwallet-pam-5.12.1.tar.xz";
sha256 = "0x7w945ifmdczynyr45xid8ymq7m0djapacb815bgy7xzr3y3glm";
name = "kwallet-pam-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kwallet-pam-5.12.2.tar.xz";
sha256 = "0xg01iianf0ygpjf971i3fln0gn44gw83gxhplwjv3q5dn79plrd";
name = "kwallet-pam-5.12.2.tar.xz";
};
};
kwayland-integration = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kwayland-integration-5.12.1.tar.xz";
sha256 = "00fncsp9ihg9f9n9a63rnx6n7jfld6bya3wymppwxnzxp1awx8s0";
name = "kwayland-integration-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kwayland-integration-5.12.2.tar.xz";
sha256 = "1s4vdsv8s72nplmk9395zfsp4fars14n2rkgqfp95b7ii76519nn";
name = "kwayland-integration-5.12.2.tar.xz";
};
};
kwin = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kwin-5.12.1.tar.xz";
sha256 = "13wdqhyhnnk64bd1vyxk7rm6bkn7z2cpcxigqdyy3iqkkpz16mfy";
name = "kwin-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kwin-5.12.2.tar.xz";
sha256 = "0lnyikmjsxjjbz7mrf421y1lw0vjqsri66dsjv2wldlbgifp94kw";
name = "kwin-5.12.2.tar.xz";
};
};
kwrited = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/kwrited-5.12.1.tar.xz";
sha256 = "1blbv41mm74bhp1fkdc0f24pk990xr8ppmwnif9g5ygsisw6mwbl";
name = "kwrited-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/kwrited-5.12.2.tar.xz";
sha256 = "1n20g92h2hgcgp9qdxifp55acbkgh09chqz0p8qrj39vw5w5abv4";
name = "kwrited-5.12.2.tar.xz";
};
};
libkscreen = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/libkscreen-5.12.1.tar.xz";
sha256 = "01j9rvhsgn57jqqhznqwpmq6x2jrfrkv9svhch3akp9qz580wzjf";
name = "libkscreen-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/libkscreen-5.12.2.tar.xz";
sha256 = "1hv180ac97m1i47c2bapv5bz149i8p55qyfxrka7fivhzszsa8x0";
name = "libkscreen-5.12.2.tar.xz";
};
};
libksysguard = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/libksysguard-5.12.1.tar.xz";
sha256 = "0xfbh0fndld6ab12770fj3szfc66zgfzh0al36lif8rvdgyqymfl";
name = "libksysguard-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/libksysguard-5.12.2.tar.xz";
sha256 = "1nf847lwx88f8g0bknaxzn0q6cvs2xn1cz6ch7qrblg0a8v3ig19";
name = "libksysguard-5.12.2.tar.xz";
};
};
milou = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/milou-5.12.1.tar.xz";
sha256 = "1k6v0lbadvmclw6mpq2xdh3w4scjjhzj6jsgq7v3g27mjf4pdjc2";
name = "milou-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/milou-5.12.2.tar.xz";
sha256 = "1sick71qd04shs34nlsplln3zpgvrbal4jlklm4k094w487fvcc8";
name = "milou-5.12.2.tar.xz";
};
};
oxygen = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/oxygen-5.12.1.tar.xz";
sha256 = "1pmw26aihk63zscxzwacp6yfqg1siamvjcgc4b81xafcby5w1xyz";
name = "oxygen-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/oxygen-5.12.2.tar.xz";
sha256 = "03g0pwk5n6idgrrm0g4hfvyls7h8by6lz6rp7h1i9ibpaph3czmy";
name = "oxygen-5.12.2.tar.xz";
};
};
plasma-desktop = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-desktop-5.12.1.tar.xz";
sha256 = "1mjwjvv0dmvvpghckqw56s2khdxbgqvs0n68c06v56hcnsvxpadw";
name = "plasma-desktop-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-desktop-5.12.2.tar.xz";
sha256 = "0wymhk1wzvx3ihq7gn4zkisp5x1n5m62fk1vmg5il75hn69qw4g5";
name = "plasma-desktop-5.12.2.tar.xz";
};
};
plasma-integration = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-integration-5.12.1.tar.xz";
sha256 = "0ljdwfw2b8nk5nsxhhhx4vh9mrdvchrzr39y6wx7yq0hk8ldspkf";
name = "plasma-integration-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-integration-5.12.2.tar.xz";
sha256 = "0hyxn51vjdbkw9kj5nqp7lr1myjpnlp5ri01jwg43v5h44mq6k08";
name = "plasma-integration-5.12.2.tar.xz";
};
};
plasma-nm = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-nm-5.12.1.tar.xz";
sha256 = "023v1v8c6zqddnms82xyym99x7faxf3g304q8zd5hk1xmwxfydmq";
name = "plasma-nm-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-nm-5.12.2.tar.xz";
sha256 = "0wlp0wqbcbnmclfvhii50sds1ij4la3wni9987xym7qrc8bxm43x";
name = "plasma-nm-5.12.2.tar.xz";
};
};
plasma-pa = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-pa-5.12.1.tar.xz";
sha256 = "19qfmrqsxf4h59ayy2cr8qixk04wlh9gg5f6aqlrbd81611pnmss";
name = "plasma-pa-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-pa-5.12.2.tar.xz";
sha256 = "119gcgx8rrihhmxzfp7wj3v8q4vwzk989w9qn5b2y72vyvllbln7";
name = "plasma-pa-5.12.2.tar.xz";
};
};
plasma-sdk = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-sdk-5.12.1.tar.xz";
sha256 = "11irkik3ppvcxfv4cd4jyim0qrr0i8y1911vw9h8gppg4bihiibr";
name = "plasma-sdk-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-sdk-5.12.2.tar.xz";
sha256 = "0as3718rkcal8va6w1ip2prsvrp6b218r33hmhdkdbbshnx40csv";
name = "plasma-sdk-5.12.2.tar.xz";
};
};
plasma-tests = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-tests-5.12.1.tar.xz";
sha256 = "1vk4c61839ggwdjxnmv6f5l5rcml4q6sjhrxykw9sx2fk43b7aqc";
name = "plasma-tests-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-tests-5.12.2.tar.xz";
sha256 = "1336kj277hrbgi5dx6z19dp8fgxhifnapd0jas4lq8z06gn6dh40";
name = "plasma-tests-5.12.2.tar.xz";
};
};
plasma-vault = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-vault-5.12.1.tar.xz";
sha256 = "13ph0npgjc8mx1jn1pszj0hv3332lyamiq4wrpc7qgj6cx81qygz";
name = "plasma-vault-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-vault-5.12.2.tar.xz";
sha256 = "1hkdaxlr00s00ax0xm2zmfk9pwl4nrs1x2dna248s6dd06cjmapk";
name = "plasma-vault-5.12.2.tar.xz";
};
};
plasma-workspace = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-workspace-5.12.1.tar.xz";
sha256 = "1ijnafbsyrv9n0mldf77mipq03k29db2ad57iwvr310xpr0sckfq";
name = "plasma-workspace-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-workspace-5.12.2.tar.xz";
sha256 = "1v4xaviby76c833gx02s1bf0hk9smv4m2s8sp75yxirh2xv4azid";
name = "plasma-workspace-5.12.2.tar.xz";
};
};
plasma-workspace-wallpapers = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plasma-workspace-wallpapers-5.12.1.tar.xz";
sha256 = "0lsczs68w9ygzc9m7q2r6fziddzgraavyf2vf49d7543lym21k8n";
name = "plasma-workspace-wallpapers-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plasma-workspace-wallpapers-5.12.2.tar.xz";
sha256 = "1x6qi0cpr461vc7gn4fzz9dh9wfwz6hcgb8dsz82wdxpwssck7i7";
name = "plasma-workspace-wallpapers-5.12.2.tar.xz";
};
};
plymouth-kcm = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/plymouth-kcm-5.12.1.tar.xz";
sha256 = "1wqqxxmcn49gryr7pyn5hq3jyl92r0m8dxns2wn2mgy2cz0xz5yk";
name = "plymouth-kcm-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/plymouth-kcm-5.12.2.tar.xz";
sha256 = "11kaprbcsd7j1kamsr9m9c27rj1ry8gxp1m6r1ibf9agimsmdfcb";
name = "plymouth-kcm-5.12.2.tar.xz";
};
};
polkit-kde-agent = {
version = "1-5.12.1";
version = "1-5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/polkit-kde-agent-1-5.12.1.tar.xz";
sha256 = "1hsy14xprgpfh0zgn1z9c8j8qs41wfizm38wr7nbnhk81k25kr96";
name = "polkit-kde-agent-1-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/polkit-kde-agent-1-5.12.2.tar.xz";
sha256 = "176wb8sh9r4f1ij604x52w4q5nbhmnqwxid3w107cqwpydnh0dm9";
name = "polkit-kde-agent-1-5.12.2.tar.xz";
};
};
powerdevil = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/powerdevil-5.12.1.tar.xz";
sha256 = "09c8snaf236cbxp8ifv8zwy1zifld3gsszvvzyvwdhbpz3gr41hm";
name = "powerdevil-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/powerdevil-5.12.2.tar.xz";
sha256 = "0b9m3jm0ar84b2ln1ml5lk26nryrrlis7kj46whzqicwpdi7dpxw";
name = "powerdevil-5.12.2.tar.xz";
};
};
sddm-kcm = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/sddm-kcm-5.12.1.tar.xz";
sha256 = "1ij90cjjnb8318v6s4m56xfhs6cvi9p09mwmgqsh5463ya74x7dy";
name = "sddm-kcm-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/sddm-kcm-5.12.2.tar.xz";
sha256 = "0nh8kviqn43zh6kdqzfcqksp48k1brd8bg4kni2cbmzif6md3ay3";
name = "sddm-kcm-5.12.2.tar.xz";
};
};
systemsettings = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/systemsettings-5.12.1.tar.xz";
sha256 = "1nzscbs8v22wa8adlxcvhr2qhibpq3dm584774ma3rmzvagjl6hv";
name = "systemsettings-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/systemsettings-5.12.2.tar.xz";
sha256 = "06cfxydpcnzi5g6ipi7sgiswgrzhnksgyhsp56zgqdswbilanp4n";
name = "systemsettings-5.12.2.tar.xz";
};
};
user-manager = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/user-manager-5.12.1.tar.xz";
sha256 = "0db8lgh6sxfbc9v68yqq0g68rznkk8ml88h8zxrw5khicazg2n62";
name = "user-manager-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/user-manager-5.12.2.tar.xz";
sha256 = "047bssxfs8z1lhg25f263fq05w6m22mdk5i16ji5i11n26v8hdwa";
name = "user-manager-5.12.2.tar.xz";
};
};
xdg-desktop-portal-kde = {
version = "5.12.1";
version = "5.12.2";
src = fetchurl {
url = "${mirror}/stable/plasma/5.12.1/xdg-desktop-portal-kde-5.12.1.tar.xz";
sha256 = "0xnryki83vmm1jmzkwfkxga0s1qfrl939rg6bb5h44j6665sv2bl";
name = "xdg-desktop-portal-kde-5.12.1.tar.xz";
url = "${mirror}/stable/plasma/5.12.2/xdg-desktop-portal-kde-5.12.2.tar.xz";
sha256 = "1gr07p281icc2v7cv3n6rzi1c70ddkwiw12n9klk3sxprjxmc0pm";
name = "xdg-desktop-portal-kde-5.12.2.tar.xz";
};
};
}

View file

@ -0,0 +1,50 @@
{ fetchFromGitHub, fetchpatch, stdenv, makeWrapper, unzip, libxml2, m4, uthash }:
stdenv.mkDerivation rec {
name = "z88dk-${version}";
version = "20180217";
rev = "49a7c6032b2675af742f5b0b3aa5bd5260bdd814";
short_rev = "${builtins.substring 0 7 rev}";
src = fetchFromGitHub {
owner = "z88dk";
repo = "z88dk";
inherit rev;
sha256 = "00vbklh6lkq1gyd08ig2vcg6c1mghvlwfx3vq3wldf34hcs3k4pp";
};
# https://github.com/z88dk/z88dk/pull/612
patches = [(fetchpatch {
url = "https://github.com/Mic92/z88dk/commit/5b4ca132fa1f31c9ac48cf2220358715739ca0b2.patch";
sha256 = "1p2l31j68p7jzykhkhd9iagn2lr08hdclk3cl9l32p1q6ghdipfv";
})];
postPatch = ''
# we dont rely on build.sh :
export PATH="$PWD/bin:$PATH" # needed to have zcc in testsuite
export ZCCCFG=$PWD/lib/config/
'';
makeFlags = [
"prefix=$(out)"
"git_rev=${short_rev}"
"version=${version}"
"git_count=0"
];
nativeBuildInputs = [ makeWrapper unzip ];
buildInputs = [ libxml2 m4 uthash ];
preInstall = ''
mkdir -p $out/{bin,share}
'';
installTargets = "libs install";
meta = with stdenv.lib; {
homepage = https://www.z88dk.org;
description = "z80 Development Kit";
license = licenses.clArtistic;
maintainers = [ maintainers.genesis ];
platforms = [ "x86_64-linux" ];
};
}

View file

@ -35,8 +35,13 @@ stdenv.mkDerivation rec {
name = "racket-${version}";
version = "6.12";
src = fetchurl {
url = "https://mirror.racket-lang.org/installers/${version}/${name}-src.tgz";
src = (stdenv.lib.makeOverridable ({ name, sha256 }:
fetchurl rec {
url = "https://mirror.racket-lang.org/installers/${version}/${name}-src.tgz";
inherit sha256;
}
)) {
inherit name;
sha256 = "0cwcypzjfl9py1s695mhqkiapff7c1w29llsmdj7qgn58wl0apk5";
};

View file

@ -0,0 +1,19 @@
{ racket
}:
racket.overrideAttrs (oldAttrs: rec {
name = "racket-minimal-${oldAttrs.version}";
src = oldAttrs.src.override {
inherit name;
sha256 = "0c565jy2y3gjl5lncd5adjsrj8c24p4i062kphv26ni5q1nn5ip5";
};
meta = oldAttrs.meta // {
description = "Racket without bundled packages, such as Dr. Racket.";
longDescription = ''The essential package racket-libs is included,
as well as libraries that live in collections. In particular, raco
and the pkg library are still bundled.
'';
platforms = [ "x86_64-linux" "aarch64-linux" ];
};
})

View file

@ -16,6 +16,9 @@ stdenv.mkDerivation {
preConfigure = ''
cd nspr
'' + stdenv.lib.optionalString stdenv.isDarwin ''
substituteInPlace configure --replace '@executable_path/' "$out/lib/"
substituteInPlace configure.in --replace '@executable_path/' "$out/lib/"
'';
configureFlags = [

View file

@ -1,4 +1,4 @@
{ stdenv, fetchurl, nspr, perl, zlib, sqlite }:
{ stdenv, fetchurl, nspr, perl, zlib, sqlite, fixDarwinDylibNames }:
let
@ -16,7 +16,8 @@ in stdenv.mkDerivation rec {
sha256 = "186x33wsk4mzjz7dzbn8p0py9a0nzkgzpfkdv4rlyy5gghv5vhd3";
};
buildInputs = [ perl zlib sqlite ];
buildInputs = [ perl zlib sqlite ]
++ stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames;
propagatedBuildInputs = [ nspr ];
@ -33,6 +34,10 @@ in stdenv.mkDerivation rec {
patchFlags = "-p0";
postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
substituteInPlace nss/coreconf/Darwin.mk --replace '@executable_path/$(notdir $@)' "$out/lib/\$(notdir \$@)"
'';
outputs = [ "out" "dev" "tools" ];
preConfigure = "cd nss";

View file

@ -1,4 +1,4 @@
{ fetchurl, stdenv, gmpxx, perl, gnum4 }:
{ fetchurl, fetchpatch, stdenv, gmpxx, perl, gnum4 }:
let version = "1.2"; in
@ -10,6 +10,12 @@ stdenv.mkDerivation rec {
sha256 = "1wgxcbgmijgk11df43aiqfzv31r3bkxmgb4yl68g21194q60nird";
};
patches = [(fetchpatch {
name = "ppl.patch";
url = "http://www.cs.unipr.it/git/gitweb.cgi?p=ppl/ppl.git;a=patch;h=c39f6a07b51f89e365b05ba4147aa2aa448febd7";
sha256 = "1zj90hm25pkgvk4jlkfzh18ak9b98217gbidl3731fdccbw6hr87";
})];
nativeBuildInputs = [ perl gnum4 ];
propagatedBuildInputs = [ gmpxx ];

View file

@ -0,0 +1,32 @@
{ stdenv, fetchFromGitHub, cmake }:
stdenv.mkDerivation rec {
name = "cmake-modules-webos-${version}";
version = "19";
src = fetchFromGitHub {
owner = "openwebos";
repo = "cmake-modules-webos";
rev = "submissions/${version}";
sha256 = "1l4hpcmgc98kp9g1642sy111ki5qyk3q7j10xzkgmnvz8lqffnxp";
};
nativeBuildInputs = [ cmake ];
prePatch = ''
substituteInPlace CMakeLists.txt --replace "CMAKE_ROOT}/Modules" "CMAKE_INSTALL_PREFIX}/lib/cmake"
substituteInPlace webOS/webOS.cmake \
--replace ' ''${CMAKE_ROOT}/Modules' " $out/lib/cmake" \
--replace 'INSTALL_ROOT}/usr' 'INSTALL_ROOT}'
sed -i '/CMAKE_INSTALL_PREFIX/d' webOS/webOS.cmake
'';
setupHook = ./cmake-setup-hook.sh;
meta = with stdenv.lib; {
description = "CMake modules needed to build Open WebOS components";
license = licenses.asl20;
maintainers = with maintainers; [ dtzWill ];
};
}

View file

@ -0,0 +1,9 @@
_addWebOSCMakeFlags() {
# Help find the webOS cmake module
cmakeFlagsArray+=(-DCMAKE_MODULE_PATH=@out@/lib/cmake)
# fix installation path (doesn't use CMAKE_INSTALL_PREFIX)
cmakeFlagsArray+=(-DWEBOS_INSTALL_ROOT=${!outputBin})
}
preConfigureHooks+=(_addWebOSCMakeFlags)

View file

@ -0,0 +1,27 @@
{ stdenv, fetchFromGitHub, webos, cmake, pkgconfig }:
stdenv.mkDerivation rec {
name = "novacom-${version}";
version = "18";
src = fetchFromGitHub {
owner = "openwebos";
repo = "novacom";
rev = "submissions/${version}";
sha256 = "12s6g7l20kakyjlhqpli496miv2kfsdp17lcwhdrzdxvxl6hnf4n";
};
nativeBuildInputs = [ cmake pkgconfig webos.cmake-modules ];
postInstall = ''
install -Dm755 -t $out/bin ../scripts/novaterm
substituteInPlace $out/bin/novaterm --replace "exec novacom" "exec $out/bin/novacom"
'';
meta = with stdenv.lib; {
description = "Utility for communicating with WebOS devices";
license = licenses.asl20;
maintainers = with maintainers; [ dtzWill ];
platforms = platforms.linux;
};
}

View file

@ -0,0 +1,40 @@
{ stdenv,
fetchFromGitHub, fetchpatch,
webos, cmake, pkgconfig,
libusb }:
stdenv.mkDerivation rec {
name = "novacomd-${version}";
version = "127";
src = fetchFromGitHub {
owner = "openwebos";
repo = "novacomd";
rev = "submissions/${version}";
sha256 = "1gahc8bvvvs4d6svrsw24iw5r0mhy4a2ars3j2gz6mp6sh42bznl";
};
patches = [
(fetchpatch {
url = "https://aur.archlinux.org/cgit/aur.git/plain/0001-Use-usb_bulk_-read-write-instead-of-homemade-handler.patch?h=palm-novacom-git";
sha256 = "116r6p4l767fqxfvq03sy6v7vxja8pkxlrc5hqby351a40b5dkiv";
})
(fetchpatch {
url = "https://raw.githubusercontent.com/feniksa/webos-overlay/40e2c113fc9426d50bdf37779da57ce4ff06ee6e/net-misc/novacomd/files/0011-Remove-verbose-output.patch";
sha256 = "09lmv06ziwkfg19b1h3jsmkm6g1f0nxxq1717dircjx8m45ypjq9";
})
];
nativeBuildInputs = [ cmake pkgconfig webos.cmake-modules ];
buildInputs = [ libusb ];
cmakeFlags = [ "-DWEBOS_TARGET_MACHINE_IMPL=host" ];
meta = with stdenv.lib; {
description = "Daemon for communicating with WebOS devices";
license = licenses.asl20;
maintainers = with maintainers; [ dtzWill ];
platforms = platforms.linux;
};
}

View file

@ -11,7 +11,7 @@ buildPythonPackage rec {
sha256 = "1imzbrradkfn8s2m1qcimyn74dn1mz2p3j381jljn166rf2i6hlc";
};
propogatedBuildInputs = [ future ];
propagatedBuildInputs = [ future ];
meta = with stdenv.lib; {
description = "Backport of Python 3 csv module";

View file

@ -0,0 +1,30 @@
{ lib, buildPythonPackage, fetchFromGitHub
, protobuf
}:
buildPythonPackage rec {
pname = "mysql-connector";
version = "8.0.6";
src = fetchFromGitHub {
owner = "mysql";
repo = "mysql-connector-python";
rev = version;
sha256 = "1ygr7va56da12yp3gr7kzss9zgbs28q2lmdkw16rpxj108id4rkp";
};
propagatedBuildInputs = [ protobuf ];
doCheck = false;
meta = {
description = "A MySQL driver";
longDescription = ''
A MySQL driver that does not depend on MySQL C client libraries and
implements the DB API v2.0 specification.
'';
homepage = https://github.com/mysql/mysql-connector-python;
license = [ lib.licenses.gpl2 ];
maintainers = with lib.maintainers; [ primeos ];
};
}

View file

@ -0,0 +1,29 @@
{ buildPythonPackage
, lib
, fetchPypi
, pygobject3
, dbus-python
}:
buildPythonPackage rec {
pname = "notify2";
version = "0.3.1";
src = fetchPypi {
inherit pname version;
sha256 = "0z8rrv9rsg1r2qgh2dxj3dfj5xnki98kgi3w839kqby4a26i1yik";
};
# Tests require Xorg and Dbus instance
doCheck = false;
propagatedBuildInputs = [ pygobject3
dbus-python ];
meta = {
description = "Pure Python interface to DBus notifications";
homepage = https://bitbucket.org/takluyver/pynotify2;
license = lib.licenses.bsd2;
maintainers = with lib.maintainers; [ mog ];
};
}

View file

@ -1,24 +1,24 @@
{ stdenv, fetchFromGitHub
, cacert
, buildPythonPackage, python-jose }:
, buildPythonPackage, python-jose, pyjwt }:
buildPythonPackage rec {
pname = "PyGithub";
version = "1.32";
version = "1.36";
name = pname + "-" + version;
src = fetchFromGitHub {
owner = "PyGithub";
repo = "PyGithub";
rev = "v${version}";
sha256 = "15dr9ja63zdxax9lg6q2kcakqa82dpffyhgpjr13wq3sfkcy5pdw";
sha256 = "0yb74f9hg2vdsy766m850hfb1ss17lbgcdvvklm4qf72w12nxc5w";
};
postPatch = ''
# requires network
echo "" > github/tests/Issue142.py
'';
propagatedBuildInputs = [ python-jose ];
propagatedBuildInputs = [ python-jose pyjwt ];
meta = with stdenv.lib; {
homepage = https://github.com/PyGithub/PyGithub;
description = "A Python (2 and 3) library to access the GitHub API v3";

View file

@ -1,22 +1,19 @@
{ stdenv
, fetchPypi
, buildPythonPackage
, isPy3k
{ stdenv, lib, fetchPypi, buildPythonPackage, isPy3k
, bleach_1_5_0
, numpy
, werkzeug
, protobuf
, markdown
, futures
}:
# tensorflow is built from a downloaded wheel, because the upstream
# project's build system is an arcane beast based on
# bazel. Untangling it and building the wheel from source is an open
# problem.
# tensorflow is built from a downloaded wheel, because
# https://github.com/tensorflow/tensorboard/issues/719
# blocks buildBazelPackage.
buildPythonPackage rec {
pname = "tensorflow-tensorboard";
version = "0.1.5";
version = "1.5.1";
name = "${pname}-${version}";
format = "wheel";
@ -26,16 +23,16 @@ buildPythonPackage rec {
format = "wheel";
} // (if isPy3k then {
python = "py3";
sha256 = "0sfia05y1mzgy371faj96vgzhag1rgpa3gnbz9w1fay13jryw26x";
sha256 = "1cydgvrr0s05xqz1v9z2wdiv60gzbs8wv9wvbflw5700a2llb63l";
} else {
python = "py2";
sha256 = "0qx4f55zp54x079kxir4zz5b1ckiglsdcb9afz5wcdj6af4a6czg";
sha256 = "0dhljddlirq6nr84zg4yrk5k69gj3x2abb6wg3crgrparb6qbya7";
}));
propagatedBuildInputs = [ bleach_1_5_0 numpy werkzeug protobuf markdown ];
propagatedBuildInputs = [ bleach_1_5_0 numpy werkzeug protobuf markdown ] ++ lib.optional (!isPy3k) futures;
meta = with stdenv.lib; {
description = "TensorFlow helps the tensors flow";
description = "TensorFlow's Visualization Toolkit";
homepage = http://tensorflow.org;
license = licenses.asl20;
maintainers = with maintainers; [ abbradar ];

View file

@ -1,8 +1,8 @@
{ stdenv, lib, fetchFromGitHub, fetchpatch, symlinkJoin, buildPythonPackage, isPy3k, pythonOlder
, bazel, which, swig, binutils, glibcLocales
{ stdenv, buildBazelPackage, lib, fetchFromGitHub, fetchpatch, symlinkJoin
, buildPythonPackage, isPy3k, pythonOlder, pythonAtLeast
, which, swig, binutils, glibcLocales
, python, jemalloc, openmpi
, numpy, six, protobuf, tensorflow-tensorboard, backports_weakref
, wheel, mock, scipy
, numpy, six, protobuf, tensorflow-tensorboard, backports_weakref, mock, enum34, absl-py
, xlaSupport ? true
, cudaSupport ? false, nvidia_x11 ? null, cudatoolkit ? null, cudnn ? null
# Default from ./configure script
@ -12,7 +12,8 @@
, fmaSupport ? false
}:
assert cudaSupport -> cudatoolkit != null
assert cudaSupport -> nvidia_x11 != null
&& cudatoolkit != null
&& cudnn != null;
# unsupported combination
@ -27,40 +28,49 @@ let
paths = [ cudatoolkit.out cudatoolkit.lib ];
};
cudaLibPath = lib.makeLibraryPath [ cudatoolkit.out cudatoolkit.lib nvidia_x11 cudnn ];
tfFeature = x: if x then "1" else "0";
common = rec {
version = "1.3.1";
version = "1.5.0";
pkg = buildBazelPackage rec {
name = "tensorflow-build-${version}";
src = fetchFromGitHub {
owner = "tensorflow";
repo = "tensorflow";
rev = "v${version}";
sha256 = "0gvi32dvv4ynr05p0gg5i0a6c55pig48k5qm7zslcqnp4sifwx0i";
sha256 = "1c4djsaip901nasm7a6dsimr02bsv70a7b1g0kysb4n39qpdh22q";
};
nativeBuildInputs = [ swig which wheel scipy ];
patches = [
# Fix build with Bazel >= 0.10
(fetchpatch {
url = "https://github.com/tensorflow/tensorflow/commit/6fcfab770c2672e2250e0f5686b9545d99eb7b2b.patch";
sha256 = "0p61za1mx3a7gj1s5lsps16fcw18iwnvq2b46v1kyqfgq77a12vb";
})
(fetchpatch {
url = "https://github.com/tensorflow/tensorflow/commit/3f57956725b553d196974c9ad31badeb3eabf8bb.patch";
sha256 = "11dja5gqy0qw27sc9b6yw9r0lfk8dznb32vrqqfcnypk2qmv26va";
})
];
buildInputs = [ python jemalloc openmpi glibcLocales ]
++ lib.optionals cudaSupport [ cudatoolkit cudnn ];
nativeBuildInputs = [ swig which ];
propagatedBuildInputs = [ numpy six protobuf ]
++ lib.optional (!isPy3k) mock
++ lib.optional (pythonOlder "3.4") backports_weakref
++ lib.optional withTensorboard tensorflow-tensorboard;
buildInputs = [ python jemalloc openmpi glibcLocales numpy ]
++ lib.optionals cudaSupport [ cudatoolkit cudnn nvidia_x11 ];
preConfigure = ''
patchShebangs configure
export HOME="$NIX_BUILD_TOP"
export PYTHON_BIN_PATH="${python.interpreter}"
export PYTHON_LIB_PATH="$NIX_BUILD_TOP/site-packages"
export TF_NEED_GCP=1
export TF_NEED_HDFS=1
export TF_NEED_CUDA=${tfFeature cudaSupport}
export TF_NEED_MPI=1
export TF_ENABLE_XLA=${tfFeature xlaSupport}
export CC_OPT_FLAGS=" "
# https://github.com/tensorflow/tensorflow/issues/14454
export TF_NEED_MPI=${tfFeature cudaSupport}
export TF_NEED_CUDA=${tfFeature cudaSupport}
${lib.optionalString cudaSupport ''
export CUDA_TOOLKIT_PATH=${cudatoolkit_joined}
export TF_CUDA_VERSION=${cudatoolkit.majorVersion}
@ -70,13 +80,11 @@ let
export TF_CUDA_COMPUTE_CAPABILITIES=${lib.concatStringsSep "," cudaCapabilities}
''}
# There is _no_ non-interactive mode of configure.
sed -i \
-e 's,read -p,echo,g' \
-e 's,lib64,lib,g' \
configure
mkdir -p "$PYTHON_LIB_PATH"
'';
NIX_LDFLAGS = lib.optionals cudaSupport [ "-lcublas" "-lcudnn" "-lcuda" "-lcudart" ];
hardeningDisable = [ "all" ];
bazelFlags = [ "--config=opt" ]
@ -87,101 +95,59 @@ let
bazelTarget = "//tensorflow/tools/pip_package:build_pip_package";
meta = with stdenv.lib; {
description = "Computation using data flow graphs for scalable machine learning";
homepage = "http://tensorflow.org";
license = licenses.asl20;
maintainers = with maintainers; [ jyp abbradar ];
platforms = with platforms; if cudaSupport then linux else linux ++ darwin;
fetchAttrs = {
preInstall = ''
rm -rf $bazelOut/external/{bazel_tools,\@bazel_tools.marker,local_*,\@local_*}
'';
sha256 = "1nc98aqrp14q7llypcwaa0kdn9xi7r0p1mnd3vmmn1m299py33ca";
};
};
in buildPythonPackage (common // {
pname = "tensorflow";
version = common.version;
name = "tensorflow-${common.version}";
buildAttrs = {
preBuild = ''
patchShebangs .
find -type f -name CROSSTOOL\* -exec sed -i \
-e 's,/usr/bin/ar,${binutils.bintools}/bin/ar,g' \
{} \;
'';
deps = stdenv.mkDerivation (common // {
name = "tensorflow-external-${common.version}";
nativeBuildInputs = common.nativeBuildInputs ++ [ bazel ];
preConfigure = common.preConfigure + ''
export PYTHON_LIB_PATH="$(pwd)/site-packages"
'';
buildPhase = ''
mkdir site-packages
bazel --output_base="$(pwd)/output" fetch $bazelFlags $bazelTarget
'';
installPhase = ''
rm -rf output/external/{bazel_tools,\@bazel_tools.marker,local_*,\@local_*}
# Patching markers to make them deterministic
for i in output/external/\@*.marker; do
sed -i 's, -\?[0-9][0-9]*$, 1,' "$i"
done
# Patching symlinks to remove build directory reference
find output/external -type l | while read symlink; do
ln -sf $(readlink "$symlink" | sed "s,$NIX_BUILD_TOP,NIX_BUILD_TOP,") "$symlink"
done
cp -r output/external $out
'';
installPhase = ''
sed -i 's,.*bdist_wheel.*,cp -rL . "$out"; exit 0,' bazel-bin/tensorflow/tools/pip_package/build_pip_package
bazel-bin/tensorflow/tools/pip_package/build_pip_package $PWD/dist
'';
};
dontFixup = true;
};
outputHashMode = "recursive";
outputHashAlgo = "sha256";
outputHash = "0xs2n061gnpizfcnhs5jjpfk2av634j1l2l17zhy10bbmrwn3vrp";
});
in buildPythonPackage rec {
pname = "tensorflow";
inherit version;
name = "${pname}-${version}";
nativeBuildInputs = common.nativeBuildInputs ++ [ (bazel.override { enableNixHacks = true; }) ];
src = pkg;
configurePhase = ''
runHook preConfigure
export PYTHON_LIB_PATH="$out/${python.sitePackages}"
./configure
runHook postConfigure
'';
buildPhase = ''
mkdir -p output/external
cp -r $deps/* output/external
chmod -R +w output
find output -type l | while read symlink; do
ln -sf $(readlink "$symlink" | sed "s,NIX_BUILD_TOP,$NIX_BUILD_TOP,") "$symlink"
done
patchShebangs .
find -type f -name CROSSTOOL\* -exec sed -i \
-e 's,/usr/bin/ar,${binutils}/bin/ar,g' \
{} \;
mkdir -p $out/${python.sitePackages}
bazel --output_base="$(pwd)/output" build $bazelFlags $bazelTarget
bazel-bin/tensorflow/tools/pip_package/build_pip_package $PWD/dist
'';
# tensorflow depends on tensorflow_tensorboard, which cannot be
# built at the moment (some of its dependencies do not build
# [htlm5lib9999999 (seven nines) -> tensorboard], and it depends on an old version of
# bleach) Hence we disable dependency checking for now.
installFlags = lib.optional (!withTensorboard) "--no-dependencies";
# Tests are slow and impure.
doCheck = false;
# For some reason, CUDA is not retained in RPATH.
postFixup = lib.optionalString cudaSupport ''
libPath="$out/${python.sitePackages}/tensorflow/python/_pywrap_tensorflow_internal.so"
patchelf --set-rpath "$(patchelf --print-rpath "$libPath"):${cudaLibPath}" "$libPath"
postPatch = lib.optionalString (pythonAtLeast "3.4") ''
sed -i '/enum34/d' setup.py
'';
doInstallCheck = true;
installCheckPhase = ''
cd $NIX_BUILD_TOP
propagatedBuildInputs = [ numpy six protobuf absl-py ]
++ lib.optional (!isPy3k) mock
++ lib.optionals (pythonOlder "3.4") [ backports_weakref enum34 ]
++ lib.optional withTensorboard tensorflow-tensorboard;
# Actual tests are slow and impure.
checkPhase = ''
${python.interpreter} -c "import tensorflow"
'';
})
meta = with stdenv.lib; {
description = "Computation using data flow graphs for scalable machine learning";
homepage = "http://tensorflow.org";
license = licenses.asl20;
maintainers = with maintainers; [ jyp abbradar ];
platforms = with platforms; if cudaSupport then linux else linux ++ darwin;
};
}

View file

@ -4,8 +4,10 @@
# Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix
{ self, derive }:
let derive2 = derive { rVersion = "3.4"; };
let derive2 = derive { biocVersion = "3.6"; };
in with self; {
AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; };
AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.4"; sha256="0wchfmz3fl0vx7mmddh9s6sy04xvjh6nkw61yx1ddcdhzrwa45i7"; depends=[AnnotationHubData ensembldb]; };
BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; };
BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; };
BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; };
@ -95,13 +97,13 @@ in with self; {
BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; };
ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.0"; sha256="0h4jxcb6vkf9ijljas7yvcx6vmrd5rpjgj202cf2jb9hx8h9497i"; depends=[BiocGenerics ChemmineR RSQLite]; };
DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.1.0"; sha256="020vrkfjs7bwnz897l3x4fmc1bnzn3n1zpmv5mmnn8fm35qcrai8"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.1.0"; sha256="1684sl2smmp2bdkfzv9v5f04100p4hqkfhn1m73pyppygkpak2hp"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.1.0"; sha256="1xbvzl8abgcafzd3f8kaypq5b6lpa8j92m2skgsagn0mfpqwqk4s"; depends=[ensembldb]; };
EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="2.1.0"; sha256="0r6j0andx2mbrjk7wfhr4k8cwpll63i08m0073fik0cy08hy0f6l"; depends=[ensembldb]; };
EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.1.0"; sha256="12shvxcj8jjzn5mil6vfil4a9jnrfs41jlll4wypgs4iyb0m8f7g"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.1.0"; sha256="1bdr417m0dk2qdkz4ydfzhl3q728c9vl8k5w84x4g8cqv0bv58lv"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.1.0"; sha256="1nri32xkz764nnpxfh8hbp6c8f8xd565jl5hwhvn6ml2awjqxd83"; depends=[ensembldb]; };
EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; };
EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; };
EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; };
EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="2.99.0"; sha256="00c92l6ii2p3hila8xpblmidx8pmy11x1xh4gnwsq3f3rn1q200g"; depends=[ensembldb]; };
EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; };
FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
@ -109,7 +111,8 @@ in with self; {
FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
GO_db = derive2 { name="GO.db"; version="3.4.0"; sha256="02cj8kqi5w39jwcs8gp1dgj08sah262ppxnkz4h3qd0w191y8yyl"; depends=[AnnotationDbi]; };
GO_db = derive2 { name="GO.db"; version="3.5.0"; sha256="02d1mn1al3q7qvhx1ylrr3ar4w4iw0qyi5d89v2336rzwk9maq35"; depends=[AnnotationDbi]; };
GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.0.0"; sha256="0xp8hyc4r3lz76i0x8r9lp74h2j8p7fcrn7nqmjhx5kn9bdp7fyp"; depends=[]; };
Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; };
Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; };
HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; };
@ -121,111 +124,105 @@ in with self; {
IlluminaHumanMethylation27k_db = derive2 { name="IlluminaHumanMethylation27k.db"; version="1.4.8"; sha256="0zw0n4a9v42ifmvw2hfzzvl8jz1d7f00ia59ljhcvvw9aj12q4zs"; depends=[AnnotationDbi org_Hs_eg_db]; };
IlluminaHumanMethylation27kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation27kanno.ilmn12.hg19"; version="0.6.0"; sha256="0idy6xn3x5c640d47q52na03s29pj4l38dpxy8q9mh6hy8g29vp3"; depends=[minfi]; };
IlluminaHumanMethylation27kmanifest = derive2 { name="IlluminaHumanMethylation27kmanifest"; version="0.4.0"; sha256="1kvz6z7g61zdrc1i93wsk1zv5mwcswfkxkl114644q09djwbz1fx"; depends=[minfi]; };
IlluminaHumanMethylation450k_db = derive2 { name="IlluminaHumanMethylation450k.db"; version="2.0.9"; sha256="1zmm65qnm95w9c8z30c9vncca451npbhhnlkpkpp894svsakxziz"; depends=[AnnotationDbi org_Hs_eg_db]; };
IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.6.0"; sha256="059vlxsx3p3fcnywwirahsc6mlk813zpqnbv0jsrag6x5bb8z6r4"; depends=[minfi]; };
IlluminaHumanMethylation450kmanifest = derive2 { name="IlluminaHumanMethylation450kmanifest"; version="0.4.0"; sha256="0qx75xwifrbkqmbkd8dhf44c34ibmbivqh7y8rvgrsizmi5ybcj1"; depends=[minfi]; };
IlluminaHumanMethylation450kprobe = derive2 { name="IlluminaHumanMethylation450kprobe"; version="2.0.6"; sha256="1iah0rw7d8qvgwvn6n2l4cln39ky010gqpd9shml45m48m6whiia"; depends=[AnnotationDbi]; };
IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.6.0"; sha256="0sfdx0lpiw3l4passx93pjfswd0iv3hxdc7ciazh53baib3xpv2d"; depends=[minfi]; };
IlluminaHumanMethylationEPICanno_ilm10b3_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b3.hg19"; version="0.6.0"; sha256="1rdkvbpbz8a8bd9ipycfmgn8a3x519abhwywka21ii9ziv3s6ah6"; depends=[minfi]; };
IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; };
IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; };
JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; };
LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; };
LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; };
MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.4.0"; sha256="180z52y03gdkf36ycr76vcs1mz9qdbwywzxrbcj6yb5vcj8i5hdx"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.4.0"; sha256="10968v506gmhzrnjz92z2p4484dbhgs6a20lkhs6f79bl66ckdbj"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.4.0"; sha256="1s5vqp3fnkswiv2slsh0wkd286psdhqcwvchcjq3gm4hq86h4pwh"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.4.0"; sha256="1qaqqkshvrf7y6lwnnh8n47zvb35vn23l8vmvm29przz8y2xz22v"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.4.0"; sha256="0gxj4nghd99r6ivgzvs86gl8j1frr8laira4gld0vmfp0a4iv5fy"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_1_nonTCGA_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5"; version="3.4.0"; sha256="060750f8zz3gasgnq6smzq7f68nd9jh12wb8gpivc3xklx7gcrk9"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MafDb_ExAC_r0_3_1_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.snvs.hs37d5"; version="3.4.0"; sha256="0kq7c2zqzm0g4mbdzqgxq5bklsr2n0cm8x97gn3cfbf61y96ngqw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.7.0"; sha256="16h0yvjmrp8x5a0gqzpd9zc2f7q89pr1jsqqwxa44i8hqrgan0zp"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.7.0"; sha256="04wqdv5z7r2lv49711k0z6vs408yyp96vnsmvyjh15m2bx3bbp3s"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.7.0"; sha256="1k7kx59k9q6hd2svxi233bgq06h3wd6ahcm5lyy2i0br5crysbir"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.7.0"; sha256="08wi41vxxb5ssbgz019dq5n4li0vfnv737iaavmy07hymh6js9v8"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.7.0"; sha256="0l0a60mv7s08aflgra3ynkpr455953fr6lxv67xwkjag8k14gsi1"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.7.0"; sha256="0ix24hj6g3n44g5g4f22dv84q3w6k588san83048x7w946774jf5"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.7.0"; sha256="1dagpmrwmsgb8hylc69wic3qfl0cfs0qp9ib32w6qv9y71zg4i1c"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.7.0"; sha256="02dhvpzacq6v785q4r5r5d6sm0wzqrgm1k7ajn7h3y8v3gjyymap"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.7.0"; sha256="1sv8g45lay1fijlnryza8nz3hf1r2lvcclf3kd1x6iw6fi0yn4q2"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.7.0"; sha256="16xkz7cbg64rcgv82baxvxnyy5gg16l9cl97xdlk4wvzkyp944hy"; depends=[MeSHDbi]; };
MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.7.0"; sha256="1d7i7q78fdnr73a0qdpcwb28jk5gj77af4vyz708gw1803l35gb1"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.7.0"; sha256="0lbq02vslnv1gj01ill14hf15mncqbwx7p872c8whvdkziwrvki8"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.7.0"; sha256="12nfjk5qndfrg4p11nfy392nzsrgd196qrxiqx36vffbindpmykd"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.7.0"; sha256="128hslq3vs4psp64vi6vj84za2kbh0jwlc20j2ivnjkrr30fsb2h"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.7.0"; sha256="1x5l0p0iiwqg7ci7nirwcsarg33b43clrbvr2cf20rxhc1valmpz"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.7.0"; sha256="1y87i8x6ismji8y6i6yibz5zacf4486dkzmmxggy6ly80lisklb2"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.7.0"; sha256="05mn2a7fb3zcfzqwl60zp946xyp0kdr5ld7nxh79yxwglhb2r6v0"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.7.0"; sha256="0hii578hva5aa388zkiarm07w437ccci3qpskd8nl0qyj1xmpb72"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.7.0"; sha256="1nm83ydgfzb43agra99sp10a513fn69yzxg430f0qdwaw564c85y"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.7.0"; sha256="1gnvf3qm17xa1q0szb4gqnslws6g026x79hmjg7fnkcyn6faxgy9"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.7.0"; sha256="0qnj09hpnmpxwj448wl4vdpzzmdm1w9m4gq3r2pak30fp5l2mv9i"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.7.0"; sha256="14z8gbnj6jjh2v76qqpikylaz781gfag6r199hkq20pfph10hld7"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.7.0"; sha256="0114vi0k57nv6pxq74c4h38b4yavs74vzidm8gg0pws2pxk8grah"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.7.0"; sha256="0ia2xp2bl6bb497gscqbxyd9kd33bynhyg5avvyfddkhpnljv5dx"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.7.0"; sha256="0rgjng9g69kwhh01kww5mahwbikiyc8qgzh363j2m7piqmsc5siy"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.7.0"; sha256="0m4n7wfxxgw5i9zpcss25x1n47bpshvca03cigfmxaqvh3lagf2n"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.7.0"; sha256="1hchnrhgvk18cs8hzg7dvf2fqrpk7fqgarkp23h325clrrh243l0"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.7.0"; sha256="19bpjyxja7clnyvhcwfv939z1xplxj5naz4vpchs555arzx0c2m4"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.7.0"; sha256="1njf3r6dfcvs2734mdsb3zlpkqgip9nnmmaxfz7wy3fqhn2ddyqa"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.7.0"; sha256="0i66f7g4zfz44gnrqgl7mw0k7kadj6pmsqkk62ik2af783y9cv0r"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.7.0"; sha256="10ndr1g76d955gii8m91l5nfvxxim3k7b5fk9r7d8fnzwagjnpij"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.7.0"; sha256="1nwig8czz65cfrq1mw62h85wh9wch69b5i12iry85x1567q7sfbv"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.7.0"; sha256="1f93fnclsp6zmza6blwkfj5ncmxs8ihjqxr9dh8xjqciyb7wfmw5"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.7.0"; sha256="0328rxhmhhmspylzx7sdmk3mlbx9hndmpfc3fkrdr2n9a8zirlwp"; depends=[MeSHDbi]; };
MeSH_Eco_CFT073_eg_db = derive2 { name="MeSH.Eco.CFT073.eg.db"; version="1.4.0"; sha256="0r7hlxd5k9n9shq3wj5ldqj00apvx4bv8h38v2i4adv29s5x7973"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.7.0"; sha256="0x6sn0zhqm5gcd9is5ka5hg24kvlyk3qc4pnyjmc88cgfz90cqqq"; depends=[MeSHDbi]; };
MeSH_Eco_HS_eg_db = derive2 { name="MeSH.Eco.HS.eg.db"; version="1.4.0"; sha256="0gyrfjyp3k5jbcg92qzz4fjpmk9m4i0v7q2yvja73sni6976g9ca"; depends=[MeSHDbi]; };
MeSH_Eco_IAI1_eg_db = derive2 { name="MeSH.Eco.IAI1.eg.db"; version="1.4.0"; sha256="16mxh182ij25qgfk14dzzpvaac7fqcnzx58j5m6hfrz3wvgh9jrq"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.7.0"; sha256="1ahln8fad45mvrg6scdaz1ilvj9wnb5mxww9jvzm33d1ik04j5sj"; depends=[MeSHDbi]; };
MeSH_Eco_K12_DH10B_eg_db = derive2 { name="MeSH.Eco.K12.DH10B.eg.db"; version="1.4.0"; sha256="00y5qlqrsjl941iaqln4m5jvskc2a6kildys881ml92f14cmgs07"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.7.0"; sha256="0vdb038i7pj7bcnnn3rf22bj3knnx4vj1dpwijivh6w9gxfkqd4p"; depends=[MeSHDbi]; };
MeSH_Eco_O127_H6_E2348_69_eg_db = derive2 { name="MeSH.Eco.O127.H6.E2348.69.eg.db"; version="1.4.0"; sha256="1as23bz0yylgf24sy84xm46bblvkacp84kjr2g8c9if1vll2x2dg"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_EDL933_eg_db = derive2 { name="MeSH.Eco.O157.H7.EDL933.eg.db"; version="1.4.0"; sha256="0qnnp2a2v3nv1br1lg2km0p96q1knwa1fx95cg4wp38nc5g0jcc9"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.7.0"; sha256="02j5gi0199z9g6ghc4rsq7h9b5sigrq1a06hhl7rdm4bpa2sy8p1"; depends=[MeSHDbi]; };
MeSH_Eco_S88_eg_db = derive2 { name="MeSH.Eco.S88.eg.db"; version="1.4.0"; sha256="15k44ricv7vi7sbw5s2nckm6jwbfzrrjp8ck06ydjp9q70hfzmhy"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.7.0"; sha256="0nv4w38w9s53jqv3zin3m61skl2gr27iizhqvrp961wy5kqyqwmj"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.7.0"; sha256="1kdv46yjw9dw1ksw1f59gn51gl1vkp8xgk1bwl7fjk9ap7pgc924"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.7.0"; sha256="07ng6pri1666sv9hznxx8whk8wkj8mm969w3dlgi633fp9qsg507"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.7.0"; sha256="0sb4nab0fibbhms8h8izwxzdwdg450klnlnczksjka5rccl8na7l"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.7.0"; sha256="02mchzw2jc615g7xd9gb42vsjjyfpz8i6p36mrd0y4nr7mskxmr0"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.7.0"; sha256="10sl8qisbf8m49j2fvwbwhhp2w964gfnm8j273sy6ma1rdcj1df0"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.7.0"; sha256="195g835jsswc9v1c0ycp4s1rgcfnwbramgk9vfrlwwiqis7yw358"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.7.0"; sha256="162rg0y1x1nr61vdzdv51ps4ilvybw6z2899xcchbvvpdgd2cxbz"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.7.0"; sha256="1mj2p780nf8wnid2c2gkjrsbhrm8jyng03wa0wy83hs0gi38zp8k"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.7.0"; sha256="076wrm9g3ppijpsq7ggcl3ld9nrm0vh87g5wspc760fjd0xy2pgn"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.7.0"; sha256="0nzm1rl1qf2impsjns3cbp45kl4ld1a8icb3ip85r2hg2js85ifa"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.7.0"; sha256="0v30ia3wdicx38a4qaqafz5xblvdhpwzlxxdxka941v364dqvjvi"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.7.0"; sha256="0j7l3w697jbf8wx2shnvs5hirpck0cwa7ik298gsjm9d5hwmjkwa"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.7.0"; sha256="0nssphb6qs81i0hay1lmyvvvsj055rxwr21p46x4zlrqy01m9qxq"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.7.0"; sha256="0pn9hhs4h9i49kw64xc4rb25gfvrn72swncvhw33pbw5kdav3mmi"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.7.0"; sha256="1mw04y6vdma7q8i456qbjga4ikswsrbg4r7l9k9dyq37rh53fqhj"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.7.0"; sha256="16b5wgr5wfhrv64za39k9kkqg1drscvnf1s98jw7inrlk3hc7cx3"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.7.0"; sha256="0g2czpb0d47yrq161fzvkmra5gmv7vqjllrhxd6v8vc65kmjkcjb"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.7.0"; sha256="15k2ymcn65hwjmp47azf7wn7b8d1mb8g6b9wxrpv2jw7cazr14j2"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.7.0"; sha256="04yw89mswnpi52hz1fa4y0ds5lykhwbwlgf52fyjhcbjw43ldais"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.7.0"; sha256="09g0cgcbgyj59irvifqzbym9pyij3g4sqk95njd6xnlq57rw1awi"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.7.0"; sha256="09yrm1skqvbs6jfn5a6s2ky7ij2b5nvs0p3vbjcv3pfh60n0zxdl"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.7.0"; sha256="0h4g20ndpbrasaxml6in3wff6ckl5dy3h7wli9zamvrljzh0qdza"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.7.0"; sha256="1ny0pqj05rz005fhi3nawixk0rj0jdnyd737359vbph79s82h4n5"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.7.0"; sha256="0p62h8i0fx5vxac0xk54laibgsgmnpavpi5d6brjrddvxa4yqvx7"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.7.0"; sha256="10f6kxzdgpidig3jc8wfgkan5yx1c8brxnf6w2y62ba3nq5nhj1j"; depends=[MeSHDbi]; };
MeSH_Sau_USA300TCH1516_eg_db = derive2 { name="MeSH.Sau.USA300TCH1516.eg.db"; version="1.4.0"; sha256="109kvsdqvra8x392l82djbd46l8z4hv4z92785ivgdcnchsdjq7p"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.7.0"; sha256="09df9issnh9adhwb5z6rxzll8d8gqpvg812p0xny7zx598hvjbyh"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.7.0"; sha256="047v0h1jrxacw33hd2iclrwzi441s60aq107ynzh549066r44l26"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.7.0"; sha256="19a6sq9yzc7q7515x7wxjdr74r3xxagfinzwgxvb13j2pcxl72qr"; depends=[MeSHDbi]; };
MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.7.0"; sha256="01m12jm4wwkdh9zkajl1fh9193pkys23m33q0zxahvqaknainv3b"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.7.0"; sha256="08991vxjyqxybi91msicrxdxi60js6gynnhkxdybhcdn0rq3q03b"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.7.0"; sha256="188jk2yx2xkyd9nr55jx0w2ki6fk5a10hc39zzs8c7ilb6azj973"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.7.0"; sha256="0csch7hs1hvabrhpvm8hwv35iqhllisf3xr9j5b3lhysdxm9awha"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.7.0"; sha256="1qr5d4zf6778bqrmxynjzl0hjvfgfbk42wldw6c40cqa51caav5x"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.7.0"; sha256="1cwb68y7sn8gnhwcm05dry9aaq2jjphvwfnl5yh0fddw7x31nsc6"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.7.0"; sha256="0dbpxc3syrw5s59cwl36skzi9d5j557aacq0j5kcwahy8abb1pk9"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.7.0"; sha256="06fckdyfrwdh3ijz6bcikr4fsd69adlcjb54brwqqaak14lf06w4"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.7.0"; sha256="1wxh3lhbc8cy040dhkwjckxc2q6laxb8wrvzd1lg72vijzsnyvlg"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.7.0"; sha256="1fz9l962w0mi8a6ch54xa4qn5v7kkva21n7q68yd4d4irm51dcac"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.7.0"; sha256="0pfx33qs6m5m5i85ib8agbdg58w8g0af188rl0jdyxrfkbfaj9v9"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.7.0"; sha256="0zinr1wbbw3q05zcaq5xaqn0gqx9z9rdhdc89g1pj6f13mhs7zz3"; depends=[MeSHDbi]; };
MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.6.0"; sha256="19y1w2nk3xj4xkg46vhmfk045j8cg81x9a27irmgl2ym3pmcpn92"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.6.0"; sha256="02bwgqh4mx9yfsyr6cxglncdybkxq9rc0gir3919sjs2my3pa0yq"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.6.0"; sha256="07spwx7akc7i82s8il6mjkmyll07v2slkv6h6fy1rrsa0hrdrw8w"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.6.0"; sha256="1gr9gh355h1n426rwsr44wk4fgy0bvjfyaai2jj0qnp9zb94kr42"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.6.0"; sha256="1a2x86cdl6q3s9phb6dzblld4y43r10gh7323c5jnwiyirhs4hlc"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.6.0"; sha256="1zyp1hsqdcspnvlnqm3wp9xly8r6kjbglbdqsc8fxllivdzxs15f"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.6.0"; sha256="02hq5agpbqcc5cva6xa37kniwi0fi7h5d4cbpmlwfc502n0ahlx0"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.6.0"; sha256="0fjpm1lf8qz5vfd4k2sd50a0nkxx8jlf31c1xp87a2d5v7gyx9d4"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.6.0"; sha256="1jrzj9mw8xqxmw4qq9djs1f5slvd5l7151pcg9bqzj0162zcz8jb"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.9.0"; sha256="0vlvfwr9bi229xwdjymclj0z2spxx8q96hpkgvqyndfpqchapl5q"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.9.0"; sha256="1cx2yzx67fgqi0kmf1mk3ykvmqmprilxrjg6l51srjhi40p9q1wg"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.9.0"; sha256="1gy4l1p0980blf91f57sxnn38gfyq99lmy3sfc141nm435abdh2l"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.9.0"; sha256="1z2y8mdjyjclf0lqlhi9dq9gq8cqrm8m2m0rnyqgbadsxviwg447"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.9.0"; sha256="15393b8pyh8xclbi43q3iv6lvza7az7zyc2zcmj2wnqx8x9nn50p"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.9.0"; sha256="0r1q383f5p92f238m7w0gxalfr8w638ij4dj8zm1b20qakwb8bk6"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.9.0"; sha256="1fv6hfqx562qiy87h7bjym72ffygfgdfx0miwbnwd1wblbrs4m23"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.9.0"; sha256="0m78hqfcpnfbq7dm28l24ckhz91sbq3mgi0qdkn6l69rg19l5xwr"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.9.0"; sha256="1s180b36nz4g7w2c49c4dddz4362ps45fjbs8q07s8d5r826wil0"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.9.0"; sha256="0s0bskw9y5gbf80xf7sh43csa8mwi0h4ka2dai6jm763jdal645s"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.9.0"; sha256="1nfy0fa7jnlsq823jq1im6zimnanqx6hc4z9sa2mhpn8yw3hrzcy"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.9.0"; sha256="111q80xyfnz9p8230wnm0xkam2p25drbcb2nyr68lpz3l02m9c72"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.9.0"; sha256="0xpm52xshhjw0lazfz9zhk3wiqas88aabin58iqykbyivnaxgiw8"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.9.0"; sha256="1ni1w608mr28fapxhxj5icf1yjq6wrnqfhxc8bf5q5qqpnb34k16"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.9.0"; sha256="0c1rxpsavj4j9sndr2bigyxsdg7hm3ckbk2rai2gz125vwlfy9ll"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.9.0"; sha256="10zxx8hpd72dad1ais9qr1ahkrqygmrzj2zph8n7zwvcys3mqqqg"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.9.0"; sha256="0g8dafmjls4lafbg3a484iym0df173szvnzfqz272sh32a69ikgb"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.9.0"; sha256="0r4yrxflppzf21zfiyq1hxsjjgm7a3akj18qly8576nl94py0h16"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.9.0"; sha256="1aicx7f7mpawq9mbrdkpach2n8yz2isqfqxcqx355js8csdnai6y"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.9.0"; sha256="1d829frcmx9h0yn4dk2ddhqjjf4kz6n0c8nag31n5viaj0jrxhz9"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.9.0"; sha256="0zx7s0xbqxl2xs1xhv5q3ppr33zfyjs4c5cmfp904k21fp1gyxk0"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.9.0"; sha256="1sahvwvh29m2icqi3l4ain817cmlajklmc6w32ay5ydbxdl2k2aq"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.9.0"; sha256="0g8z6cdz5wad9fhzd0f7p7961kjv1icfwxfskgimrb0dqn0vwngz"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.9.0"; sha256="1g68dv597h62kidkaxmyj67jpz49aklr77hf0zy0n556whb0gjw0"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.9.0"; sha256="18r1mfmszsypp6iwdfcdlxzbz2ym53q160y5740d20nf18jwdkyl"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.9.0"; sha256="09r83x7c3ascv5k10izbsybbchng578f88cqcc34a71h01ccvbgl"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.9.0"; sha256="0c6yi84drl1kp270ifhkha6s5555pmx122r3zsh5lqip4pf36ik0"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.9.0"; sha256="0za05dgsy67sl1rg827mn4iir2fcwqgnmmifppdkmg5bcqvh3sli"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.9.0"; sha256="1m8vszsdql5vnbavrdazrf0d88nq8c08bz9fggr1799fmh9ivppi"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.9.0"; sha256="1sjm22yl4a9lwv6j5hhs16zs39fv9xvaga2bgb55rv6i1zbw514v"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.9.0"; sha256="0lll6xsxccxg04nnbchkq3rskzqj70czky27yhn99dpnb7cl2gpk"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.9.0"; sha256="0fny3nxwpihh505h54b82bf22p74xhf89xns9n7wgsg6j7zr1q49"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.9.0"; sha256="0jklkvqwajnprs951ws5fxjxkx1dqmi7nldb854wciyanya7srbz"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.9.0"; sha256="0gmjpbqcrg700fi4qgg9cxny8rwclpg9sbrg2yqpnpiwfp3m1xp9"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.9.0"; sha256="126xn0dgw08xdjw0sqm80v3pwqlmjzarifq1s3s81qkd814pij2y"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.9.0"; sha256="1zfq3h886x9kyislnl4mj6ksfmr4slmayw2f63wp3vhlqc8xlp6m"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.9.0"; sha256="18n2aajv2m1s3y13w88jnxiwzmmqiplmp2la1fh6f34ywsc8vcf2"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.9.0"; sha256="1qhw2zbldsxr9mii73n5l2l3xgnnmfcdm5zlnj8q6maz0rg8npvc"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.9.0"; sha256="0siyszvzgy61f44mk6hgg215jin92i1bpyld932f3ydkb2cg1vii"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.9.0"; sha256="1r5ighzpbw3rbi9pv75xgdxz34yl7d4nimc3423fva6m25bl14f1"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.9.0"; sha256="0m3f9vkl97drciv68qvb6b1zxg4376sgrxd5fn7r8v6jnk3764h6"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.9.0"; sha256="0kbf04jgy9sdq99x7c3j6fk1d1p746sm5h0wgcc496hmj9f3d7xq"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.9.0"; sha256="1s96nh30gg3q6agvd75h8wkmsna753wlhh79fb563plkhynila3j"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.9.0"; sha256="0f49mvvrigq06m6wsf2bn5b2k06c5azfnzks8z8h91h7p1cdn239"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.9.0"; sha256="1nlqqgwcaic49lr7qknm4fnr28iy5a5g8pln9ay5c94d82ihaanj"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.9.0"; sha256="0s8hfixk8axy155rhv9frnvdannm7fwv8xbnn4yqrqz97s0w3l8x"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.9.0"; sha256="0kc1zv1rlw6sg72z5if2ljyyb99nn9jj67z0x77zpjil15igjq0f"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.9.0"; sha256="07n81wg4g7r554xs4ziv637mz22ycmn5h03v2a1bl4gfagmp2wga"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.9.0"; sha256="1sss6f5c039vic2kbxf5zchxx6qqdpysbwfb04xqn7vb0h5xs9aa"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.9.0"; sha256="1lmy5rqpsxrmcc1zshj2dygdyrw5i95bmp9d31686h2pf7rxjxa7"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.9.0"; sha256="1j892b88xpf1lcz6lv7n0b2lmqda3j6na6lm18qrmnydvihsrglz"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.9.0"; sha256="0mnyhj6cfzgar0rsfzza9vydh3kiimyix732zm80gsj7xq844hs4"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.9.0"; sha256="1gmlg22jdspcv6056iax16hk6vry739s7px1c0vpgmsblj8blzjv"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.9.0"; sha256="05qsamqm7dimvghka10z03shchx08gxaf7bv488djia9msw04l3w"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.9.0"; sha256="0h0027wgxm5ngk7087hcw1n2xx04q0sgfcpgmv2wn3f88mh42r9l"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.9.0"; sha256="1cgbalyamgf1aj48ndhby8x3mzdwn8aiv9nrh8mpyz9zssl0ywdm"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.9.0"; sha256="0wwnjqc0rvymh9fzh8l9hnlmaymchp54v9fqavxl3cwr2jjyyxis"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.9.0"; sha256="0s869r4pz02d9k4dcg7qxy75h44x6lli8hxm3f9fjmmvv6cv18zs"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.9.0"; sha256="07krh3k6d1q9dadphs07sapyv3dfmlhdmgcfrrramixx7paqqd1a"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.9.0"; sha256="03bs083cvgd5gwy0n2hqq08r8fzw426a4fjx7yg9ypp6316bp03b"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.9.0"; sha256="0snydy5c7y0437qndc7ki3nswbr3jfj2fssdiqa3yfrbd4dgl8fs"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.9.0"; sha256="1g6q20hk4v2kwjj9shrwyrf068qv8zrz4dlv58id1im0h6kzi1bq"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.9.0"; sha256="0wdwy7jqy47flyk25fv51l2acg7lisf240sli9snf0hl4rg2m8sh"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.9.0"; sha256="193amf74qwglzdpgc4b9f2g0jxs2s5ilfwzk5gpzzsyr6z19m8sx"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.9.0"; sha256="1wpl49hsz2la272mp836cgqnncyddknrfbfalikwrbydcpdflmqj"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.9.0"; sha256="0x1s4qs17sy7pz1bhlgfzgvixf50h4wcpa885600f5jv80piz10w"; depends=[MeSHDbi]; };
MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.9.0"; sha256="0959hmphr884az46y6zvsmi28vsz66y3jf09f2hki6cwg7gp28l2"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.9.0"; sha256="1fdwj5dpfpm8cbq5i1wk3n5qq0ygw876shpxiqlj7i7a8yrnikqg"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.9.0"; sha256="1mrmxpi4zkj77qnr5gsx7nnmhz3h7w07mji0khahd1cnkdqb455g"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.9.0"; sha256="04wrimmnwhzqhk88jp059h5wpj0wh35ilgzfmn7m66igbiywsyiq"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.9.0"; sha256="1wida7bmggiamd8bw7sx3sc84rjhpa6c7kgbz7ppf5z5zzabxwj8"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.9.0"; sha256="0s7792dcgh5ilanr4nnkfcf95j4yndsncr63ybw8g5kp14qw3b6i"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.9.0"; sha256="19g80bjw7h0f4w3mlrj56xmsdf46bjvs2bykf7hbz911qblkmd08"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.9.0"; sha256="0x5amvf092r97zkzivsks99q4iaw9cnwpk2mjq8qjfrj2fg9mghc"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.9.0"; sha256="0h2kndx4xva57hhapzkwnk4by05vpcrgqakc5cpil11in9wwm4gw"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.9.0"; sha256="11gssp2rm9jln3bhallxhscn1vlp62yv1dqsshswzhda230pwsk8"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.9.0"; sha256="1pn4v8hp2g9i6d0wn7yj28fg6nfrlxi2zw7svmqlqf0n15sj4g91"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.9.0"; sha256="1vljxgv6x7417sash10mjmwdqs6xmqhwxdsf5n8nn3bw283k0jkv"; depends=[MeSHDbi]; };
MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@ -233,8 +230,8 @@ in with self; {
Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; };
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.3"; sha256="1vsfhradfhk087vzi0jzkd7qab72g0v0x9s1rr7wblw7wjz48299"; depends=[AnnotationDbi RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.4.0"; sha256="1s50z6g6azm9jbxbfq2qlciapm31pv5rsylgpy4p0wsc9dbxh723"; depends=[AnnotationDbi]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.5.0"; sha256="14c85j6ms6cqfifpsihn6ajk6b317gw2b904skv4dqclbgcg6ymx"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@ -247,42 +244,41 @@ in with self; {
SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; };
SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
SNPlocs_Hsapiens_dbSNP_20090506 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20090506"; version="0.99.9"; sha256="10943wbc56mz8ywcd71ndbdz7h3a9a17mzfdvj237wsgp62arfh6"; depends=[BSgenome GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP_20100427 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20100427"; version="0.99.7"; sha256="16m15sqxnczb399bcy7nll804h4955f6w8mag5jlda6h11yh732z"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20110815 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20110815"; version="0.99.7"; sha256="0nvpa44xy7zb9q63max1q0pmfibh976blmnirryxcca20j41f8ic"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20111119 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20111119"; version="0.99.7"; sha256="1znblqzb1hx5yjs2g387l3az8dga51si5blpwngvs0zbbdypgww8"; depends=[GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.10"; sha256="10crnx5jk2790h936j515jgdf2mirzzmlnvn6pbp81fd5imkvdpd"; depends=[BSgenome GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.10"; sha256="1a8ic2naa6bqc1fcylxc81j51xmc249fn40nk4yrvpjz59d6h381"; depends=[BSgenome GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.5"; sha256="13kmgfwzwmbrwd2g24a3cbp634jih7jigzhzq55bzzf3js48h3n3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; };
SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.11"; sha256="069fkjplii6p63w8b3fjk87ynl5xv7d5bgnr78ia2n95yv6iqzjw"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.11"; sha256="1wzxb7d8v3yx8fvra4yy1zyvvh0l53ad87ksp3i1xj413cvph671"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.20"; sha256="1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.0"; sha256="1grg9vjsvlrcfdnn25q5rnr2d92ff73xfpv9fh215r23b552a5f5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.0"; sha256="0sz0jd08kh604kq830h4k5g7f3dpqq0dypz0jyc1hp7mf367h16b"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.2"; sha256="1p7yhxdlmr4fbp4mxakdwp2xf609ws6pyrjl8xq3ilzhf6fyypim"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.2"; sha256="0g4l5r6mqvjsvq3q6kzlvi0w75hm2bxdq0p0pbdpdm8lf9d5aca3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.3.0"; sha256="0h0n3yqdzqip1ikqq396pziyn0l5651yg87bb0cgc3gy2ldsrl74"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.2"; sha256="19vr9wi2hspsij7gwq7wnlg94zlcqvn639z3jr8s3yngr89d9mnj"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.3.0"; sha256="1kgwb63z37zq5mspqzf2rb09vl8b71kn8aa3fsmyn8phmhay98zw"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.0"; sha256="0vgvjb6jqzqgmnnqjx9qdn2by01p1pfrqd1ks91q2db6wqcm5jjv"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.0"; sha256="07d21x4sw4gwszi32wjli9hczgr1g579pq0zyzndwvkibqawvdwh"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.1"; sha256="0sdw0gbk84lfjmiyy2x4q01zh1vbjq3vfziwxkb4h0v6nab63k01"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.2"; sha256="1cqc7vlv2jrznh9s0yb70nwy0a2pa7iswr4m253zx6p197igf33l"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.2"; sha256="0d7wqrg69kj65rga9m473ji1s9251gvz6l071ibqmga31imrgb9l"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.2"; sha256="1j68yqfbnas21za7y63p1kpi85jbxb7l3m6i50ig9mp6mmvy7i26"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.0"; sha256="0ap8qn2bza0j9ismnpv2l64wdbzc9i0q6sb1w195134hwq9cr51y"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.0"; sha256="1d61p9aj2wv4gdx2q5g33j7hipzfj1a4zi6apn058cffy1clyrn9"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.2"; sha256="1k2kaik3zvnx3giia1dps06073xkbvd4dva6npskkvzhvqpfxq41"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.2"; sha256="1wma6pm5v9qv29h76p7aj7kwq0l857as0wgya3ryj3mynhsf9j9j"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.0"; sha256="08kihk3sl1hw32rf8122y03grbg1xdbc84z1b2ldnf752xr4zn9x"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.2"; sha256="0gqrv5n1c63p5cdl1c0l866x9qgfqf6w23p6m12zaxn8riacdnyi"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.0"; sha256="1p3m7g24x7pvavwix5r5kyqsklv7hxav23nz36cs7gsqh1ifizaq"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.0"; sha256="1f1b16ya35x7x5x2j7a62qlg2ka5wd3521kfbk2xp4dr8h5ah6mx"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.2"; sha256="11yxvr20dmjjxw4pyxfnxy8znlxr48xqq9hb6k95y9dyqnir0vik"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.1"; sha256="08w4279c5aq5pazbbdji344lxz113n763q8j2mlagcwfs9r5k9sk"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.0"; sha256="0jpvb3phw0967my7afk8scsjzpq1x0i2za534ndizzql3cp45yh7"; depends=[AnnotationDbi GenomicFeatures]; };
@ -294,22 +290,22 @@ in with self; {
agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; };
agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.0"; sha256="1bcqn20a963l49ah3j59nmd5qd15qad56p7k3880q4cp7qza2xsw"; depends=[AnnotationHub]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.4.1"; sha256="0pzd8yij4ixdp48sr0ksjdmx3mw9gaizgj1rx33375a7091580yf"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.4.1"; sha256="0rcpiaf0157c8v433a7khnam6g15siai1xbmf4gviw5vgw8l5a9l"; depends=[AnnotationDbi]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.5.0"; sha256="0ycprvhry525p4hmxng2swcf92m9fsyqcj8na13q9i5p6s1sl5b2"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.5.0"; sha256="0xpa7d15av8pa2l5ksx8mcabhyfdxyk1hw2sd1gdyhyfcn7mjxky"; depends=[AnnotationDbi]; };
ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; };
ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.4.1"; sha256="113pi0dr4jc0vr2gfm8pkavz72s16bw3l6ml3hmvzjy89yg9r0s0"; depends=[AnnotationDbi]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.5.0"; sha256="0h02wrj18c24rgkbdnva5qc3znn30i5357c9rzww7y4brhhww8ma"; depends=[AnnotationDbi]; };
bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; };
cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; };
canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine_db0 = derive2 { name="canine.db0"; version="3.4.1"; sha256="11imzg70ffkfnb1q6i9q3mj033ncl9pmzpkv2wp3nc3l5nz8z2sg"; depends=[AnnotationDbi]; };
canine_db0 = derive2 { name="canine.db0"; version="3.5.0"; sha256="1a7qn0jg1yw8222k72058ymbws14fs0y6m4girxzs3v8xbyxji7v"; depends=[AnnotationDbi]; };
canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@ -319,20 +315,20 @@ in with self; {
celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.4.1"; sha256="0gfd9nrkdnjymqdssijp5r9mdj2r6bmnkf6y4xh6ri90b02d1xpf"; depends=[AnnotationDbi]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.5.0"; sha256="134ch8bgzjdra9pycs49lmak380qgx71dbmr1s276pyf3h67fzxp"; depends=[AnnotationDbi]; };
chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.4.1"; sha256="06z4kmpnsj98mi5j0ahz57grlbdqb8ycl8rf592561lvmzzdfs8h"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.5.0"; sha256="12smymvq4l7aw454lah9gd0rywgi3bcbd3vf8h6a93y2mnhdxz9q"; depends=[AnnotationDbi]; };
citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.5.0"; sha256="0hb3bsdh79aajgb9vk34kpd61py6rxv4vm8ygzm531nrh44s7a33"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomdhumantranscriptcluster_db = derive2 { name="clariomdhumantranscriptcluster.db"; version="8.5.0"; sha256="1kfv4f0jbd4a63mk83jhpbhfhlyka9hwfik7i52kszkb8grgz48d"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumanhttranscriptcluster_db = derive2 { name="clariomshumanhttranscriptcluster.db"; version="8.5.0"; sha256="07x7gl4p9dyrk41hx6d5ddsj3raz7gqimc79irfia2ismazwvd95"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumantranscriptcluster_db = derive2 { name="clariomshumantranscriptcluster.db"; version="8.5.0"; sha256="0h4i35pglq6mwxxflg7l09f8a1xvhnrjygns54bnv8cyj97vq2a3"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomsmousehttranscriptcluster_db = derive2 { name="clariomsmousehttranscriptcluster.db"; version="8.5.0"; sha256="1qvn0dpakh7g43wrssg2wyy5zi5axs7bqfmc97d8jgk56rwyzh46"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsmousetranscriptcluster_db = derive2 { name="clariomsmousetranscriptcluster.db"; version="8.5.0"; sha256="17y506pcfq8x9g4xl6wm9di545bgbzc54mjlybmz19c56456z5w9"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsrathttranscriptcluster_db = derive2 { name="clariomsrathttranscriptcluster.db"; version="8.5.0"; sha256="18dxnpvck3qfw660mx70d8psa1grzv9h43zf36qa6m958ybmcq19"; depends=[AnnotationDbi org_Rn_eg_db]; };
clariomsrattranscriptcluster_db = derive2 { name="clariomsrattranscriptcluster.db"; version="8.5.0"; sha256="1ds9vssyg9zpp99zzd6110k1x9v2ji455k7xmk4nd699y1vfc67x"; depends=[AnnotationDbi org_Rn_eg_db]; };
clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomdhumantranscriptcluster_db = derive2 { name="clariomdhumantranscriptcluster.db"; version="8.7.0"; sha256="0lp6qb4f3qsm3krcagl5fd403i5yz5apimf57wlrj99r8zrax4s2"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumanhttranscriptcluster_db = derive2 { name="clariomshumanhttranscriptcluster.db"; version="8.7.0"; sha256="1f9lqyr0slynb317vp4bys3s9y9ivxnyayy6zh8cilsdz64glzmj"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomshumantranscriptcluster_db = derive2 { name="clariomshumantranscriptcluster.db"; version="8.7.0"; sha256="0f6g20zymxnamhspv18cz32qd842nxwyf8mwznsn5yhf3brab437"; depends=[AnnotationDbi org_Hs_eg_db]; };
clariomsmousehttranscriptcluster_db = derive2 { name="clariomsmousehttranscriptcluster.db"; version="8.7.0"; sha256="0xzzyy8ppwgii0ymkg4agrhw84qgb6hdr8pyh8flyqyd2xbih9xa"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsmousetranscriptcluster_db = derive2 { name="clariomsmousetranscriptcluster.db"; version="8.7.0"; sha256="1rf06mj4s6dqi77982wjjs0ssb53j4rk7q4k9wq6iwj4xgz29npk"; depends=[AnnotationDbi org_Mm_eg_db]; };
clariomsrathttranscriptcluster_db = derive2 { name="clariomsrathttranscriptcluster.db"; version="8.7.0"; sha256="10qh0cz0jyy88nh43p3f0i588r0d8xqkgjr6s62i1273bkrpijr4"; depends=[AnnotationDbi org_Rn_eg_db]; };
clariomsrattranscriptcluster_db = derive2 { name="clariomsrattranscriptcluster.db"; version="8.7.0"; sha256="1gh3jimr6jjkgh3zgvw9s1gynyawz8gckm9xghwsl9rii7vzy135"; depends=[AnnotationDbi org_Rn_eg_db]; };
cottoncdf = derive2 { name="cottoncdf"; version="2.18.0"; sha256="0xfwwla941fbxddykgizpar8dh8q459src7kc5wyrsd3swp3zyp5"; depends=[AnnotationDbi]; };
cottonprobe = derive2 { name="cottonprobe"; version="2.18.0"; sha256="04mfjd3a7ikif4pv46s6h9dj2s912w8ihg4yyiii7s3jlmvy62ah"; depends=[AnnotationDbi]; };
cyp450cdf = derive2 { name="cyp450cdf"; version="2.18.0"; sha256="1mbqn9940sxc0ksvykdk3i4jvnkv9q91igwn1rwmv2z18hz18qf0"; depends=[AnnotationDbi]; };
@ -345,43 +341,19 @@ in with self; {
ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; };
ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.4.1"; sha256="1v9qa6pxwwc3ykh8nasi42vld07c9il0j72vfc8lpsxi9v56l5cs"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.4.1"; sha256="18shfvqbv925xi694zv8c1mfxndrnsmkxdncncld11ra17wqs6cp"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.5.0"; sha256="0g11rjb0373dc3a5m4padk43p4l204yw4lmvasnvk0p6cl0c4zlw"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.5.0"; sha256="1cwafxgai0lfwv7fdicrla3lj6k5lv7wz3vz6a0vqzhna3wb3ajz"; depends=[AnnotationDbi]; };
ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.4.0"; sha256="1nlbmzngg077p1bz462qsyvhc9k6pn2vzmvmsqs0hwrxsk2myvgq"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
fly_db0 = derive2 { name="fly.db0"; version="3.4.1"; sha256="10bh5mrl163w433fr8g8n5b190wqcldxvxdamw13gwn79hymbjr4"; depends=[AnnotationDbi]; };
gahgu133a_db = derive2 { name="gahgu133a.db"; version="2.2.0"; sha256="1ikyvj1gi39qbakpn5wl0823ljavng1k33zvpf2k24jdhdw927qb"; depends=[AnnotationDbi]; };
gahgu133acdf = derive2 { name="gahgu133acdf"; version="2.2.1"; sha256="0hvd4iwj2fjiqp1jzbz68i1w6jn77nrsih316jlj85bhb35f7cyv"; depends=[]; };
gahgu133aprobe = derive2 { name="gahgu133aprobe"; version="2.2.1"; sha256="108lki2bg55ysh485shxxsz1imm26g5a3grgcmxbfs4pgna3g4h0"; depends=[AnnotationDbi]; };
gahgu133b_db = derive2 { name="gahgu133b.db"; version="2.2.0"; sha256="06hyjnr387wk40jjdk8gzqpfp4afjzva9fky3l4qs249ycy4snic"; depends=[AnnotationDbi]; };
gahgu133bcdf = derive2 { name="gahgu133bcdf"; version="2.2.1"; sha256="0qbqirflzjy0is3m9zca1660aszxf947fa7d26baw6vm2b37qg4q"; depends=[]; };
gahgu133bprobe = derive2 { name="gahgu133bprobe"; version="2.2.1"; sha256="1i8wcnp8434f6zxib86yhpm904clwg907x1hgjfsgy4viqa4jbqv"; depends=[AnnotationDbi]; };
gahgu133plus2_db = derive2 { name="gahgu133plus2.db"; version="2.2.0"; sha256="1p48q1zqrjdvv6qq5br9v24fpryp2zy3z079nkgrgr4d2brvhab8"; depends=[AnnotationDbi]; };
gahgu133plus2cdf = derive2 { name="gahgu133plus2cdf"; version="2.2.1"; sha256="1fmv6rrjbii1g5grcvgl13w814mbqqyqyav0wi82d30v4ijz58g9"; depends=[]; };
gahgu133plus2probe = derive2 { name="gahgu133plus2probe"; version="2.2.1"; sha256="0r3vizwmvy0jmsqbplagkincj5xs71dk7csgwwv4arx80kbl9l9l"; depends=[AnnotationDbi]; };
gahgu95av2_db = derive2 { name="gahgu95av2.db"; version="2.2.0"; sha256="1c1hc79rjisx7jd7sdlr2d1lnk621y8azshriia12b5z0l5j9m4h"; depends=[AnnotationDbi]; };
gahgu95av2cdf = derive2 { name="gahgu95av2cdf"; version="2.2.1"; sha256="1ckcjlb4v9x9zynf5w1h5fgmdr4ck22h9bjfwz3n184v48wgi39r"; depends=[]; };
gahgu95av2probe = derive2 { name="gahgu95av2probe"; version="2.2.1"; sha256="033zk49kp4r5in6yk3za8ll5wrchiklfrzc10c8lgqhpm6y8y5k2"; depends=[AnnotationDbi]; };
gahgu95b_db = derive2 { name="gahgu95b.db"; version="2.2.0"; sha256="0v4lpbqqhm6mvpm0biykcq0ym1rb968zcwp9rg1lv6zka5arj9fq"; depends=[AnnotationDbi]; };
gahgu95bcdf = derive2 { name="gahgu95bcdf"; version="2.2.1"; sha256="1f8yp4g3cjbl11x0wajln7bms3jhy6cbyh0bggm38gbb18gws4wg"; depends=[]; };
gahgu95bprobe = derive2 { name="gahgu95bprobe"; version="2.2.1"; sha256="1lr91f57ym3lxz5bi9xm3g63vskw5js991h5zk4c2i2npi0x22gm"; depends=[AnnotationDbi]; };
gahgu95c_db = derive2 { name="gahgu95c.db"; version="2.2.0"; sha256="1psjf511agrv7nma4wa39jgd82z82df42d5g8jvwjrm2wb6l2v4l"; depends=[AnnotationDbi]; };
gahgu95ccdf = derive2 { name="gahgu95ccdf"; version="2.2.1"; sha256="1lcal0y48vhafikkrn744l1gxrnlhkh7jmmhb7pglc9ldh7x9azh"; depends=[]; };
gahgu95cprobe = derive2 { name="gahgu95cprobe"; version="2.2.1"; sha256="155vnch85m6ph7av8j4ylrqajm3vc2v623qpkixqh06l4fy59pck"; depends=[AnnotationDbi]; };
gahgu95d_db = derive2 { name="gahgu95d.db"; version="2.2.0"; sha256="0k0ricb8cl3xh93nq8rr3206w18b91ca67992cc5b2fbaf8lxlba"; depends=[AnnotationDbi]; };
gahgu95dcdf = derive2 { name="gahgu95dcdf"; version="2.2.1"; sha256="181h5i9ywpn6vwdvcd2sq5yxkx41h09plgqsdfigw5w7816524k6"; depends=[]; };
gahgu95dprobe = derive2 { name="gahgu95dprobe"; version="2.2.1"; sha256="0znll2h3cm1sbyzjk121fxizs4qv5jd80kslr5zhdd73dkdlzlbm"; depends=[AnnotationDbi]; };
gahgu95e_db = derive2 { name="gahgu95e.db"; version="2.2.0"; sha256="1qbsshgvzfavpjrawn3lbl0pcfwl0g7n8vr1109gvax6gj00la7n"; depends=[AnnotationDbi]; };
gahgu95ecdf = derive2 { name="gahgu95ecdf"; version="2.2.1"; sha256="1bsh380h7ai4l6j8jjz8yzfdwgxyhpnqm5fnb6mgma76xbiwab4b"; depends=[]; };
gahgu95eprobe = derive2 { name="gahgu95eprobe"; version="2.2.1"; sha256="0c4zx8d7qsb3xhy0prfh7l6xbklgpxbbznqhq9mmgjb8qh5g9ygz"; depends=[AnnotationDbi]; };
fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.6.0"; sha256="08wfrcmbpgbgfzfr9gpg25073905fhz14s8jz2wckdmhwjlgavky"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
fly_db0 = derive2 { name="fly.db0"; version="3.5.0"; sha256="18r1m5b6v4km9cdyd0pkxvargh2bcz876y8iwqhbxkf16b9d70qj"; depends=[AnnotationDbi]; };
genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; };
grasp2db = derive2 { name="grasp2db"; version="0.1.14"; sha256="14y25k1fwh0272ws83rcpi25wc97r4z5mpmck8q9i9nshd5dmym4"; depends=[AnnotationHub digest dplyr GenomeInfoDb RSQLite]; };
greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="0.99.0"; sha256="1ssh015yspl470wq5rnkxkb7xid27gzvga3hx9a9vj08iqal3rbq"; depends=[metagenomeFeatures]; };
grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; };
greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="1.0.0"; sha256="0y9570c7cchwv9d5rgwhfz6k5qmi11g2smqq8q23z66iv333kii1"; depends=[metagenomeFeatures]; };
h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; };
h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; };
hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; };
@ -452,8 +424,8 @@ in with self; {
hom_Sc_inp_db = derive2 { name="hom.Sc.inp.db"; version="3.1.2"; sha256="0l9nly3k7jnf6g1qnwyw22ga1hdyjdvn3hrlway8pb9rv7279bil"; depends=[AnnotationDbi]; };
hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; };
hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; };
hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.5.0"; sha256="0d1gydcxgcxgchg7imlbkc6acz6py894v6m2i7wl6mpm793az7r6"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20transcriptcluster_db = derive2 { name="hta20transcriptcluster.db"; version="8.5.0"; sha256="114l2jh1zg4jiirw2gp5djp7x4yf9l9x4hrxfflzzk2b0gc66fwk"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.7.0"; sha256="12m58w0av2b806w75df7spg72d0v7mr7vlhsgdc9h221r0g06vgx"; depends=[AnnotationDbi org_Hs_eg_db]; };
hta20transcriptcluster_db = derive2 { name="hta20transcriptcluster.db"; version="8.7.0"; sha256="1aipxv8c6dwhhhxp0r75j79k038qk4jkmxcdzqiph3k0ylpikmb8"; depends=[AnnotationDbi org_Hs_eg_db]; };
hthgu133a_db = derive2 { name="hthgu133a.db"; version="3.2.3"; sha256="0sgi7pbkndcpl775qn36rdlsm4j6ip2lfk0cmkh8zqryrj3yq6hh"; depends=[AnnotationDbi org_Hs_eg_db]; };
hthgu133acdf = derive2 { name="hthgu133acdf"; version="2.18.0"; sha256="1a5b421lx0nxy3mrrxjxifwjpnv289c5q2a89xhnkwlcfhqlzqrp"; depends=[AnnotationDbi]; };
hthgu133afrmavecs = derive2 { name="hthgu133afrmavecs"; version="1.3.0"; sha256="0466xgi67r5rpp7cs06ib0cr6vvx8d881g5l96b8sh9948pbn4ss"; depends=[]; };
@ -493,20 +465,20 @@ in with self; {
hu6800subccdf = derive2 { name="hu6800subccdf"; version="2.18.0"; sha256="1xir2k62whqf39g7g5rm646nz6hxq83nldrrc3cyzch85723a55p"; depends=[AnnotationDbi]; };
hu6800subdcdf = derive2 { name="hu6800subdcdf"; version="2.18.0"; sha256="1caiyyna5ffnnx85h9f62h2fwd42wwi187g9igspcy8mn2hakpfw"; depends=[AnnotationDbi]; };
huex_1_0_st_v2frmavecs = derive2 { name="huex.1.0.st.v2frmavecs"; version="1.1.0"; sha256="0fnadflyg615v7w071jilg42w8w5fvnac7rm0wg33klvzx9c9knx"; depends=[]; };
huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.5.0"; sha256="0yrc5hf2yhxr33xr7mlrljbndbxl1mcv1ylnfak8wnhkzlbz5ir1"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.5.0"; sha256="1ybxzqqpxfdjpw7mkyn1ydyghgsv5yfp27byi3yifpjz3ymm0lzi"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.7.0"; sha256="14m5rkn9nksn84dlcl29wpahxsxhaswkcnc75mbsfagk5fh2qybj"; depends=[AnnotationDbi org_Hs_eg_db]; };
huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.7.0"; sha256="1xdsrx34625ad6sjkq166i8xlmwdwhsisi8dbjj6zkazg4mbxhd0"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene_1_0_st_v1frmavecs = derive2 { name="hugene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="0jwk5mm37fil3h9h1hrc4bm3sxfdzywbmsqm1blvrvb5q6jgl50a"; depends=[]; };
hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.5.0"; sha256="1sh6ca1abnd5a09rcpa99gfpcnl0vjk49v8hnkbrzlrm8b6z603a"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.5.0"; sha256="0ydqq477ms68q8g7k8zj5mz609cdyk5ly5mxvvkzpbfrw7r663jd"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.7.0"; sha256="170fdxmhbi6k115gbmvsmmq6hphbmj7yw23ycsjr9v963pwjk0ml"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.7.0"; sha256="11wr9d6bp7yf66hdfx3vnp88brwkxwbxvfdnwyyffdpcaa92c6s3"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene10stv1cdf = derive2 { name="hugene10stv1cdf"; version="2.18.0"; sha256="1drsclrcf344z4m61qxd1a1lg2qrd2h7s3y6kk7xcy76s2mqjx2f"; depends=[AnnotationDbi]; };
hugene10stv1probe = derive2 { name="hugene10stv1probe"; version="2.18.0"; sha256="1cn6hdw1mj0i4f0syvx8g1r02bbki994y3s9hrdps3kvcbaw6brd"; depends=[AnnotationDbi]; };
hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.5.0"; sha256="1akfj1z69s5kda10rybbpx0gl1ziwjq8nf0vr0sd24vzn3z0ml34"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.5.0"; sha256="1shmhzqy5zjaj564j6gfhs5plg3rhiz46qk2mkm7xyysgkjwwq90"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.5.0"; sha256="1bxhlz983ar0m72rlv3vyqkl9gyqkndyv896yyim09ah8hpln24k"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.5.0"; sha256="1cz6080w523j1dvbrgslkw1qs9bspci7086azz0xn4pmqjrkr78i"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.5.0"; sha256="0wcjldj9vxf73c2j9wmkra4kfd3n34yhicj53svgkcb2s9ldj8mq"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.5.0"; sha256="0ndcpkkqa5bq8g70bf1119vs1pj0hzkqlmm1bxy3zw86by06gass"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.4.1"; sha256="0dpxa3ifmqsg63rzcz333iqkhg8hjipfyvl18899d11cxxcm9wh7"; depends=[AnnotationDbi]; };
hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.7.0"; sha256="0nnq0mm04qlzfdslmwhjdww76h2zww4bdqfvs53580qzxnsbw2nl"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.7.0"; sha256="11m9nc1l4rm8mwsnkiak7wdh6593q5x982k7iva4id8qrafykddx"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.7.0"; sha256="047jc40r5z13xwxi1g64xvv8jkdx4k2xn53fqc87nm0qrcz4h1rm"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.5.0"; sha256="0n1qrah9h7n4cjpvhqrimcl42p413i2wmkw6iglqg1gcbkbrihvh"; depends=[AnnotationDbi]; };
human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@ -544,7 +516,7 @@ in with self; {
m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.4.1"; sha256="041qsj8dkpavjs444v5fyhfzl7p6s2fx6ny16m36ak3g0w528bnf"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.5.0"; sha256="1q6m85ck84qg3fksmfmcrqd0s2yll9n6c3rcknh5ndmy30wdn9pl"; depends=[AnnotationDbi]; };
medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; };
@ -585,20 +557,20 @@ in with self; {
moe430b_db = derive2 { name="moe430b.db"; version="3.2.3"; sha256="0hb6pa07j5hdirpprcm9vdszbh5bkgf38gyp3g0gqvlc32nklv58"; depends=[AnnotationDbi org_Mm_eg_db]; };
moe430bcdf = derive2 { name="moe430bcdf"; version="2.18.0"; sha256="0yl5pkqj37188k2yvvsqhnhm2vx523r11sry976bwzcadlicfhvb"; depends=[AnnotationDbi]; };
moe430bprobe = derive2 { name="moe430bprobe"; version="2.18.0"; sha256="1nziw3pj4picz0aazblpqkbw82wq3vdajh9i78yfvlz1bwb2vpfi"; depends=[AnnotationDbi]; };
moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.5.0"; sha256="15i8fqp6r5q39pyhnpfqcwpqw4iar1yf9id391js0fbpz01n0hq1"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.5.0"; sha256="0idxw02vyyspkbcd80al8h3l991v9n93d5cfag9f54hriz6ra5q8"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.7.0"; sha256="18cgynzjvfwj65v06b0fmxk1b13jlpd7ljaif9hp74hk6hs6gha9"; depends=[AnnotationDbi org_Mm_eg_db]; };
moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.7.0"; sha256="1nmswvrbh9awp2bk2lbklasng9m74d12yqhxy502wnlc8s18h482"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene_1_0_st_v1frmavecs = derive2 { name="mogene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="00lyakg7dhsm3jkh011mfq1vy439mds64zpm6fgyq592x3k9w2ah"; depends=[]; };
mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.5.0"; sha256="08nc0qn8kn4nfsxv0nxyrs9d3rw4schgl1k9sfhav1a0zp9gak5a"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.5.0"; sha256="005ahfhnhdxfivhwk1qifph9civ4411clq9h7km9m4ldn0bsg23r"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.7.0"; sha256="1yxl29fpp37h2w3sq2v9lmiks4m9ip9hlmasisxmqd5cvs2wnpmj"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.7.0"; sha256="1k96334hvb17kxfvgiwih3pp2474fdcck9yv3h9jaf2mbbzg2q6z"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene10stv1cdf = derive2 { name="mogene10stv1cdf"; version="2.18.0"; sha256="1zhq08zsghck39ly7ymcjanzgw3xy1hqw435hwcrrlipv6i4lbmj"; depends=[AnnotationDbi]; };
mogene10stv1probe = derive2 { name="mogene10stv1probe"; version="2.18.0"; sha256="1qjnsf6cv23gnqdpcy1xqxy807y91fnaiyh95hg99v932pvika6a"; depends=[AnnotationDbi]; };
mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.5.0"; sha256="1zkhix305yn3s3a9bvngi62gcnmr516cr48i9mcfc4wm32vlvqwx"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.5.0"; sha256="0ginnqn5p5gqha2w888i3v62qr1as4vfa3ffid3g6ylc7wr8q57c"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.5.0"; sha256="1wlnbz5lycwpcj152yf683gvidymr9clyrq3sknkskdqkk6m0k11"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.5.0"; sha256="1pk5z46pgj1fknknsl0cxpfmrnkss69c9apw5nxvg3kjm4m3zsyv"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.5.0"; sha256="04j1ga7jfgp72pwa99p5yd7g4vk0k5964srdrpr7p9xi5664ac4r"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.5.0"; sha256="175h9jaqjqhabxi3ydrmr8ykwyzw078frqj93p55b8gdwccbngzb"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.4.1"; sha256="1b03kqwpnwhnmv6x0cgn24qsl75hvcqmqpc1mlw8ms7hlbvaiijg"; depends=[AnnotationDbi]; };
mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.7.0"; sha256="02lfkn65r4ylmjz1gy9qm63ia3javj601vm2yw06vpn9r0mkw74v"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.7.0"; sha256="09fw9fsk0nqmyinhfjf8aqkfix7m7kjnf27xq85x4zf1vgbw2kl9"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.7.0"; sha256="0a56rxqrv1vyykv8nmnq6682s3sxzwyrcjr29h585zy5w0gnvygp"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.5.0"; sha256="1plw9bjk75qyn5lb2ybvwbq2hrq67fvx0mf2m4dhr88wlncfynl3"; depends=[AnnotationDbi]; };
mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@ -609,8 +581,8 @@ in with self; {
mouse430a2probe = derive2 { name="mouse430a2probe"; version="2.18.0"; sha256="1f7a6mvcpv57h7kfj1qzkcwh7mdl2w9z6ysmrgan9037rd0652sz"; depends=[AnnotationDbi]; };
mouseCHRLOC = derive2 { name="mouseCHRLOC"; version="2.1.6"; sha256="0xylgnz43xmjnqdwv7pn034wfs61va21lvcpn9igdik2s42ykpp2"; depends=[]; };
mpedbarray_db = derive2 { name="mpedbarray.db"; version="3.2.3"; sha256="04pwchivzb19awnnqr9an0nl49rgdva58ip1fkgbavp3vlirxv4i"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10probeset_db = derive2 { name="mta10probeset.db"; version="8.5.0"; sha256="0k7mpqbd02hyc77kiacxzrq661bc27hdfj04lsdg2szm9ij14c11"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10transcriptcluster_db = derive2 { name="mta10transcriptcluster.db"; version="8.5.0"; sha256="1qbj0ac3xfbl0xw0xj4xix2spswgdp91qqqck8arlafpyacjc71b"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10probeset_db = derive2 { name="mta10probeset.db"; version="8.7.0"; sha256="1bszj4wx7x8x4vdy1np755nx4m94hqwx43mg3ymbjb1hwfjv2cdr"; depends=[AnnotationDbi org_Mm_eg_db]; };
mta10transcriptcluster_db = derive2 { name="mta10transcriptcluster.db"; version="8.7.0"; sha256="1vsv943xwn7y1ghw4bcyyywl4m4y0gsckdxkfyd8lg36b2gq08q9"; depends=[AnnotationDbi org_Mm_eg_db]; };
mu11ksuba_db = derive2 { name="mu11ksuba.db"; version="3.2.3"; sha256="188ld7awcgrbqxkwqyr98739x4ihmcawv3lv2ybrc0khqifylzj3"; depends=[AnnotationDbi org_Mm_eg_db]; };
mu11ksubacdf = derive2 { name="mu11ksubacdf"; version="2.18.0"; sha256="09xm3ah3zlssclblx663rlwrnmx3niabd5nf7zf7krhbpgcwhyim"; depends=[AnnotationDbi]; };
mu11ksubaprobe = derive2 { name="mu11ksubaprobe"; version="2.18.0"; sha256="1p3kc06h83ivh06a8qqcbpgbsbdfp9nnwvqfxr6d1gdn15qcp96k"; depends=[AnnotationDbi]; };
@ -635,28 +607,25 @@ in with self; {
nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; };
nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.4.0"; sha256="1rp0pipdfwwacfnznj65di2xny8ccjdfll882jp73yrpk8x6g9w5"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.4.0"; sha256="0176yrpjxdn83nvqlp24ad65fwqdfwk010lmygl0anjgnskxb3y2"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.4.0"; sha256="1cazky0p9rj8islivfhrmqal4q39h9hiq48mpmycpkh8qrrl7nyy"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.4.0"; sha256="12llfzrrc09kj2wzbisdspv38qzkzgpsbn8kv7qkwg746k3pq436"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.4.0"; sha256="07h339h4vh9dwb6jdr7hczcc1bka5gibi5g7b97jlpykn5qzqjrx"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.4.0"; sha256="1vzbphbrh1cf7xi5cksia9xy9a9l42js2z2qsajvjxvddiphrb7j"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.4.0"; sha256="0c1q78gbqgv915daalsgmm58xxqw4zsd3xf99m9kzfv7qd11c0nk"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.4.0"; sha256="14bv6gbznmdf3yhz2r4pqfbxc5ql7h2wv6n5alyir1fyy1gdyf0m"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.4.0"; sha256="1cgb7fg0c7z3f7x17b0ir8zzgvi4k1d64ryqy9mmfk9bg5n1f9y1"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.4.0"; sha256="0swfc1krsfgjhxgkhdnhq4x5ikviixk0pyacvl7f20gbyqlgxpsf"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.4.0"; sha256="19mg64pw8zcvb9yxzzyf7caz1kvdrkfsj1hd84bzq7crrh8kc4y6"; depends=[AnnotationDbi]; };
org_Hs_ipi_db = derive2 { name="org.Hs.ipi.db"; version="1.3.0"; sha256="06nkcjcavzwgnxzmbj05i4dapszf2wq7m5s0g8d6hm7kxz5wxddy"; depends=[AnnotationDbi PAnnBuilder]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.4.0"; sha256="1lykjqjaf01fmgg3cvfcvwd5xjq6zc5vbxnm5r4l32fzvl89q50c"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.4.0"; sha256="0ba5z4fvv69bsw62wcx4smsz9fdlk01sql7scgi799ij9qzzd13v"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.4.0"; sha256="0miw8n5lqijfxw2q7lyxkp2srdf1rdfxyx8k87r279x23wxqgz12"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.4.0"; sha256="1dqj2japcbdqkisdla6aca4cjf4hbigf4gb2gn8abx5n1di0h2pi"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.4.0"; sha256="04az0yf3ngrz7nlbmmy9k97i9i8gf4dxbmgvd03vrv59y0x47m11"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.4.0"; sha256="01zc0kx0jrmcwly4bb3cy69x3zm7mkrffzx720mwphn61gzngz3z"; depends=[AnnotationDbi]; };
org_Sco_eg_db = derive2 { name="org.Sco.eg.db"; version="2.4.2"; sha256="1ppjl55059gk9jbh8c8xbsn2jlqz1hm650vm9gxnbd8hpnk63vgz"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.4.0"; sha256="17j0lvwp212zaxw5dx8488884v6b7l4hhzn2d14wisf8s3w1djig"; depends=[AnnotationDbi]; };
org_Tgondii_eg_db = derive2 { name="org.Tgondii.eg.db"; version="1.0"; sha256="1vq3qbk6jswfffj5lfwsic71h8ga7a6gqf6wfa7qcda3gvfhnwlc"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.4.0"; sha256="1sbzmnxi9gvq3x86w6jw49qgzd7g58ilh1xmnvr840pz50b3n8j6"; depends=[AnnotationDbi]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.5.0"; sha256="0dzd281yi2vikzr4civf38wy8gpsdr9k2ks9j6sa2rnsnpf1hnh9"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.5.0"; sha256="1vpzciar4lwq5r8faz1mh9y085i71q0gcxz5c2gn9469qbi5ymmp"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.5.0"; sha256="1qcl4px85qhim5nndj4j1ajyvby8ldbr0g0pml2q54wnjs9f8a8f"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.5.0"; sha256="02ggchixlmzywhsbr0h2ms4dravv7m5964cjxqcjxqs16vjwlbk9"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.5.0"; sha256="0rdiffd9v6g6cwrd23jspj0bxyds9l977pv27azagw1f7bkdqgbk"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.5.0"; sha256="033qak1d3wwz17va0bh8z8p8arx0aw2va6gm1qfwsvdkj9cd9d7d"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.5.0"; sha256="0854rqanjzscvlq7rj6bvlxcfyhwiqwi4lnw7abzvv0zcwvf07i0"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.5.0"; sha256="0cydh8rj9r2g6wzs42sh6cf77fs0nrgww4jsy3x61aa0b8lngjxj"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.5.0"; sha256="00s7p7wrjd57wvwxyhb2m603kms2pm67rr3m83dp2s0pa4ffggmr"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.5.0"; sha256="1q5g9ka4fxjq5jp0mg6x8j44995y2r9hvs91qaan8xcmsa900q3q"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.5.0"; sha256="1v6wa5613cjq59xd7x1qz8lr9nb2abm9abl2cci1khrnrlpla927"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.5.0"; sha256="11q21p3ki4bn4hb3aix0g775l45l66jmas6m94nfhqqnpjhv4d6g"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.5.0"; sha256="13ia5ipyif6cxj4gmw4jl0j84iwj4289k69qgfm6qsw4xdc8amln"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.5.0"; sha256="08pldh0j1z9csbyzxn89xk9ir1av1dd4jbh79l04g4s34x13m8l8"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.5.0"; sha256="1sbimln1v575pxzsgx4sw5712nwfy8n188limrnhwg7brj893wrl"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.5.0"; sha256="11vnia08kblh3v4jypl6sw94p1n6702zskxj0gv4ijygaq61m5x4"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.5.0"; sha256="1h3wa5g65hg9fdg722w520gb6c16zgccg62vxgd37gj9bdnywg5w"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.5.0"; sha256="1wizm4dx6an2pfi322aykis41a6skhgv8yjyfl2pdi0kizlvw26c"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.5.0"; sha256="1rhz86d0ly7z79pbaf7s8kw1sx9ys8bawfrcgs33km2dd2cgzzi0"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@ -830,10 +799,10 @@ in with self; {
pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; };
pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.4.0"; sha256="1xkrm9s3x301g8kf0p60dcgx3irmsl8jfaayxbw3zgfyyr0nb1mw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.4.0"; sha256="0d99mmih14s7mw0qsp2izdhi6fc59aamz160p0p9jpfbd8v4fz0g"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.4.0"; sha256="0r0wb1yj0ahkhql45n4jcqc2jgac5nshrjk3vn0w8sn80mxzialj"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
pig_db0 = derive2 { name="pig.db0"; version="3.4.1"; sha256="1rkkbxk33nj8n2cijsh109xa49dw3b8hj05h396z0g6k2rflkxhx"; depends=[AnnotationDbi]; };
phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.6.0"; sha256="09gnsrv37pzpbyx98vjcsi1kavazz4hkf7r48dggdad9lqg0fqnm"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.6.0"; sha256="1g0yd623sb73h3nf1mszchiyw5mk4dlz2h7mqix9d8xdsqmrc81l"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.6.0"; sha256="1p2kx6zrgc9yzkvmizzrlhhc75mnxpjgslpxm3kcmvsg12qd4zmz"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
pig_db0 = derive2 { name="pig.db0"; version="3.5.0"; sha256="0xga9i0bicxbbc9rypwjw376qqg401smwwqjgkdgf4i5lrds0xi7"; depends=[AnnotationDbi]; };
plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@ -850,26 +819,26 @@ in with self; {
rae230b_db = derive2 { name="rae230b.db"; version="3.2.3"; sha256="0rjs9lijabhxfrs6m9qri7a1c10zm1mxqx7bbip366cw069f5dx4"; depends=[AnnotationDbi org_Rn_eg_db]; };
rae230bcdf = derive2 { name="rae230bcdf"; version="2.18.0"; sha256="1j2i49cp042nk3rkf8q6gxcnwd5cihz1nyg8r6yndkja51r41pi8"; depends=[AnnotationDbi]; };
rae230bprobe = derive2 { name="rae230bprobe"; version="2.18.0"; sha256="1smqs93fks4rd5g9kk7cacnpsnj4rjr0d6fl2i01mdiihfi3csny"; depends=[AnnotationDbi]; };
raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.5.0"; sha256="15i8inp73n8acjrs6z0hk88lgzjrcqd9vr5cv4vnsdzmzbnhrxdd"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.5.0"; sha256="1r0rg2ifiswbf5a2zahm9823vnahii9s2vrhprbj87rbl7wm19xl"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.5.0"; sha256="0zywhbxajqcmfl90r95r2ghas4zrla92rjc5qa7vf57cas40pk1s"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.5.0"; sha256="1wiichdhfi20lav0vqi80jw0k8i6pbsrdlark8x397sn1acynn3q"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.7.0"; sha256="1i5f6ygg3jq6msqacd1npnvcb3pp5a1c95na7rdd3818h27pj4vf"; depends=[AnnotationDbi org_Rn_eg_db]; };
raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.7.0"; sha256="18y7fkpg34d18xczc5xz5hcigfkd4fxzlhd1cvfadxjhjyaj5fhk"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.7.0"; sha256="0ignrscm098xpnrp60lhnakgh4rwypzk6a5nh7miacxbs2mcy1lr"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.7.0"; sha256="12w77ajis8ll25knmjm8cvnxjlgpj6n7j66lmww21y7dvg33gwlr"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene10stv1cdf = derive2 { name="ragene10stv1cdf"; version="2.18.0"; sha256="0fm2yj6nn3v1wiscjb53hm4ylh5cgxvs7qgc9sbsbpv7agr0bzng"; depends=[AnnotationDbi]; };
ragene10stv1probe = derive2 { name="ragene10stv1probe"; version="2.18.0"; sha256="0cb3a908hixcakl41ay4yyfm9r97ln8gjidn4rs1hr7qaplfj1mh"; depends=[AnnotationDbi]; };
ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.5.0"; sha256="1qsrj2r0j4819rx2m6ahxz8fhpwz5cv6srysl585igipjy1caq43"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.5.0"; sha256="17np61fr5n545ilr4xlwsc559ni7rc38ns67x41lj6gnaz8cpmiy"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.5.0"; sha256="08g7wnfmxai9klscb7yywj6p8yfnid8px3qqwkn2s2r1iwi46azg"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.5.0"; sha256="09qcsbhl81j4wiz90fw6ldy97x821w72wywqik6rrsw1qhyaizkg"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.5.0"; sha256="15920i2wdyn5j0gn8nxdv1dvwhkmh1swzkazj5zqrg304xhrv1ki"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.5.0"; sha256="08gzlnbng7vhc3kw72lvrzp8f6799vr8b4c4vkdzwsrhd4hs60hf"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.4.1"; sha256="0zzf91wbincgp75mwjx6q13xayb46giqv8vrz1wx8pmw2halqiy4"; depends=[AnnotationDbi]; };
ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.7.0"; sha256="0cc6cch0r2dlk689gsphcsf5ikbgyczslmq7r20q1cvgqxbzj6kp"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.7.0"; sha256="195dx0splkvdwqn4h6nvmm3zd0sv3vhcjz1bp1qxgi6d5iakvkry"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.7.0"; sha256="1p8qiqwxpkq2784ixzdd9pq38nrb4x8qwfmk5alr225br4vv0k2q"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.5.0"; sha256="09kbsaksmas6avcdlvbg6kvdw6cf156i7qip9l0mhv6qyqhl0p36"; depends=[AnnotationDbi]; };
rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; };
ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.58.0"; sha256="191bz92rr446g8w4m4wr9c51ykfqaj65vp7adb56wch7r8llawrl"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.62.0"; sha256="097na9ms80lxpc4qaagaqlxs7kjsjpkq649f2jqbav0mkph52bdh"; depends=[AnnotationDbi]; };
rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@ -883,7 +852,7 @@ in with self; {
rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.4.1"; sha256="16p3zsx6sr466xzf0yd667an21br21n13agacsysf9g1vw4gc7cx"; depends=[AnnotationDbi]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.5.0"; sha256="09i0f2ddss092awdmhshnndniyy3pzfj56nfbkgrj0y22lgfw875"; depends=[AnnotationDbi]; };
rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
@ -892,8 +861,8 @@ in with self; {
rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rnu34cdf = derive2 { name="rnu34cdf"; version="2.18.0"; sha256="1snb89530zxdbsfs1vgw30b1wdc5sdr1q46bmvz5m9g57gyficr0"; depends=[AnnotationDbi]; };
rnu34probe = derive2 { name="rnu34probe"; version="2.18.0"; sha256="1rzjha1v453fxiwqs2zgwcbrvz6w96biz2jny0hrh5s86d5f6xpb"; depends=[AnnotationDbi]; };
rta10probeset_db = derive2 { name="rta10probeset.db"; version="8.5.0"; sha256="039klpv3v3npb9i9pw4sjh2jwyv8ffk83360h41lxmmy17fdzlmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
rta10transcriptcluster_db = derive2 { name="rta10transcriptcluster.db"; version="8.5.0"; sha256="0q0szasa6c1klhhzdp08sv598m7njf1xql9h710xajbyksq0accy"; depends=[AnnotationDbi org_Rn_eg_db]; };
rta10probeset_db = derive2 { name="rta10probeset.db"; version="8.7.0"; sha256="02hcq8zflfixiqwsjr7bsllcqh3hh910n00hzlqry07mwwxbv356"; depends=[AnnotationDbi org_Rn_eg_db]; };
rta10transcriptcluster_db = derive2 { name="rta10transcriptcluster.db"; version="8.7.0"; sha256="1al9npm4skccr7369gpg0hxsw3nmngsl6z06c27n3ymdavsd2dyj"; depends=[AnnotationDbi org_Rn_eg_db]; };
rtu34_db = derive2 { name="rtu34.db"; version="3.2.3"; sha256="119l36gbzdi52na2lkjbpb5r2d9pp5rz2zpzfj7isw07an6h8wmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
rtu34cdf = derive2 { name="rtu34cdf"; version="2.18.0"; sha256="10f5wnvk820c8brl2qqs7mv6jcn1v6pmz680kvlpyz9s2sz16936"; depends=[AnnotationDbi]; };
rtu34probe = derive2 { name="rtu34probe"; version="2.18.0"; sha256="0mcp9lmc65j3ds73gyak72pkshnx6km0d2cm324yaxlp9bqzfchw"; depends=[AnnotationDbi]; };
@ -920,8 +889,8 @@ in with self; {
vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.4.1"; sha256="0r76ck6b2zkf38z59n9m3frc2d6v27frrbryvyk6lv4bnnwa1p2n"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.4.1"; sha256="0953cf597hxd2h28p7bqrv5xxs96y3bxr4x1hp8bm1v0l8l37d13"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.5.0"; sha256="05r29cqswz3ph3adymdigayv5ci19cd02y26kjbgwrh38xha5cg0"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.5.0"; sha256="136yrk7qlbzy717xy1abpn5l42j0qzal72y0p20wwxw60xhpx1rv"; depends=[AnnotationDbi]; };
xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@ -933,7 +902,7 @@ in with self; {
ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.4.1"; sha256="0d9p474891jshxynmwa63xg7kb01s6vb1dll3hns9ps0bpm6d8r3"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.5.0"; sha256="00rp099g5302hy4g4h6j11nslc2j6p58ax80mnswhzvfr37sb99f"; depends=[AnnotationDbi]; };
yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; };
yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@ -942,7 +911,7 @@ in with self; {
ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.4.1"; sha256="12a1qk7wjjsclrj2nbf02hwk9pakzkgzgy4l2893bnwyf0c30ffb"; depends=[AnnotationDbi]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.5.0"; sha256="1mkyhf1vz0n98zs941v5f7nl0cg0s873ny3m6vdpj5c9nyqc8hxs"; depends=[AnnotationDbi]; };
zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
}

View file

@ -4,314 +4,332 @@
# Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
{ self, derive }:
let derive2 = derive { rVersion = "3.4"; };
let derive2 = derive { biocVersion = "3.6"; };
in with self; {
ABAData = derive2 { name="ABAData"; version="1.4.0"; sha256="1xlr9ps6s6xy95wh4c0m09rl2hkp9rms2gbfgsf0y46j1jak4ick"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.16.0"; sha256="01b0ksakw06l8q9a1ihb56sm0p8v78d2n4aji8yj1nnfi2kcgr3m"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.14.0"; sha256="1hza3ckxlc9k6mrdxc94r8yrsnj51ywcpinslrfyhanibrjvi8yc"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.10.0"; sha256="0f5my7jbp0x8r7hcj5rvnfa3swxh39apfby7rlqmkznr175jmsa8"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.10.0"; sha256="038yspp7l837i8lqv99alj1jsb51b27c84m4nvglpy3pzwvbqda7"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.8.0"; sha256="070iv3jschvz36fa6q8d4s6prlbmwj4m07f69yhfv4mlb30nz6gk"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.12.0"; sha256="1z6bn6sqdqd152gn2bzppy6g57n281mwmp5vvv901mb3w1i3yvgl"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.12.0"; sha256="0dqbf9rvha6cq0ipf9rjwx6akmcapsrh1k2p5kws3i0i2nw2kr3v"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.12.0"; sha256="1yx8pri6zdvv4hr4w43axb10d1y2bmqfp5mhhn9j286wxal7qgh0"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.14.0"; sha256="0prmpqyklxl47wna3kdh27bnrw9saa0s48xidmybs1nzgvizs5s4"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.2.0"; sha256="1bcr57mpvvxlryrhcpwzagv9gdirhfdmyc4rsv6giixqsj2d2m9v"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.4.0"; sha256="0hc5zqdajra3qy76z65qccllksz268vpnrn35232zp6w3i1zljx6"; depends=[]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.12.0"; sha256="1dvy6bg0949cx12smpzkndh1mq32jy0hfq7aaiixziqbxb32gggm"; depends=[beadarray GEOquery limma]; };
CCl4 = derive2 { name="CCl4"; version="1.12.0"; sha256="19f1zmicl6i90l11sq6ly9913v2913s37c5jz5341p822shf8knz"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.14.0"; sha256="078avwbs42nnaqxa1k4769rgxign1xmwv2s1irjgd9dkxqq2ha0n"; depends=[affy Biobase]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.10.0"; sha256="1jf4wrbwbzbn4rwjkn936zg1cddd1s96a8m8r9bx2z2zm49vc5bp"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.2.0"; sha256="0p8v2qxg2hj1q3r8pwpp46zfbwjyiilq85kmzxl8v2flcw9n3brv"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.10.0"; sha256="1yd8k5pacs37yvb1bbpb46h9s3h1r8kb01r1hiwr73m1rbsg3qdl"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.10.0"; sha256="0mw0q9s2dsqvc5qb5p57624raki7dgs0qc1anr2vaw1pi1gvfgib"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="0.108.0"; sha256="12m13kv1f1cxynlar59m5s0ihz92ff52j80dqz5m8dzsynbjckbz"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.6.0"; sha256="0zjc5h348h94h2vm926z592f1zibv000nvx039662ydhsxn58mp2"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.0.0"; sha256="12nkc500mqzfrg5yksfwf4f4kv2flk4l7lxx6ws0kw2hgrnm9yz1"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.6.0"; sha256="1hkwwkz2k4dnsl2sshr33as16x0dh98xvsnpf0zll2vkjkjw44v4"; depends=[BiocGenerics GenomicRanges]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.12.0"; sha256="1hb4ay5a9z2c5zmjhlbbkcbycvmk27qimrpb6rvxkh3lprap2lv2"; depends=[bigmemory]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.12.0"; sha256="0wg9bsb1264wif23rqv2c863rr72crxb4n640q37ayf5zw7p6jgh"; depends=[affy hexbin limma qvalue statmod]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.10.0"; sha256="0v34kfkdpw8zmg1hkxbdjvk58m18ldxvsirz7s3i2vaf8k1g4r53"; depends=[]; };
CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.10.0"; sha256="1rblm57ljkq1dmzsbcmwm6p9gp0mgpgm2bbjczy0dppbhhr34m2c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.6.0"; sha256="0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.2.0"; sha256="1pc26xa2hx6vsl0xpfwhrgvnnrbxgr5cnzpygayrzh3hs4ryi987"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.14.0"; sha256="0baxgyvy07k502ndf81p2v51wrlb1p9fy0zxlx6faf0g80kghx7l"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="1.10.1"; sha256="10z534ffv975x08hxdfv871lm1ngg9qmgakfhamqcdlbc02y1j93"; depends=[GenomicRanges]; };
DREAM4 = derive2 { name="DREAM4"; version="1.10.0"; sha256="0swyywaja7cfvn370wx6cbh5pda724v3rd5iy4rhvm7i1pg3m4l7"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.10.0"; sha256="0hx68nzhjb7sqrc2zzn37n0aby388bvbxr6ads7k9rckz50lha19"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.6.0"; sha256="0n3ald8rg5yp5a27bwdfhdrl0rns50bmn7yi3z38qcvk6iiq9v70"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.12.0"; sha256="0944p9gk4vazb2gqn5s2mij0b2vyvgs050h61d1g2iv11156wc6v"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.10.0"; sha256="0vvzvxkvg6l0q143jjh74mx4xam3q4xc9wlxbl693aipz0kpicql"; depends=[]; };
DvDdata = derive2 { name="DvDdata"; version="1.10.0"; sha256="0rz5yhfcammg17rx15dnkcg43cwqbwi8ipkkqmlfkr3kb4km731v"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.2.0"; sha256="1rm3yjsngjrn86l2rdx0cz1kz9ki8h16znhag854l9yfahh9sr35"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="1.4.0"; sha256="0l12m881b5j0i7dw2wz868p0mqlfgfz3y5yyhj6kyzvwaj677p0a"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.12.0"; sha256="16q9f1p21xdh00mzb3vc2zpmyry9cfb884y2vp60gpq930vs3fsj"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.10.0"; sha256="0k0wajjj340wpc3zlcd9kylllfa3ly5cbfg8i38dc5g88hz5nvkr"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.2.0"; sha256="0hw83rnb5bl4a390h2x413zlss52bkbmfyq0md69zx1rlvxpdprp"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.10.0"; sha256="14ph3ll6xli84bpg9s43hmigwbnyprzfgmr4yifw77ssqkj0r3wx"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.10.0"; sha256="1wilz0mwizar8491wkym5x3xwxfxmyd9r1djh3xnc9gnq88df0dy"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.12.0"; sha256="0q06szq9vs46frgax6896wkrxw5rb89854vnib68kaxkmyqrs4rp"; depends=[minfi]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.2.0"; sha256="1d4caj4zrjlwkpbiclqxjyzzz3vg97p61hkmrxa18hbq8v9c67z1"; depends=[minfi]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.0.0"; sha256="0z966py4bgxnifly56mlyqvi5v4mh1ay5nhfb7fd9qciq42jclzf"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.10.0"; sha256="1dgaylgx19cbvvcrdr3wwr9rp3jdx89mlxzc4fivnzllmf1dyyqa"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.10.0"; sha256="0r0iv8hp25ld9vpyij9lrk0xphaxcz4j4panyc83i18d6s9jw51s"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.12.0"; sha256="0h564577s3aklgg2a34026nacfzq3mpfmwmsl19dcmk7all5i100"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="0.108.0"; sha256="13lc52xdv0mk4mr54i33k8rwb19496f8g8dj7xhh9vvx3dkcrl5k"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.2.0"; sha256="0y8f1cq8bwkjr79vias3snclqcddd8bmh3rl041s4pv5adxgddgn"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.10.0"; sha256="0lbh07ygyns6db3g0208691q7ry0mjg2lhis4pqw6rr122mvhh4l"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.12.0"; sha256="0ygkrm7gybfj4wb8rc56zrwyfbpgl1kz50dyrz5glwkgzxqn00dq"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.2.0"; sha256="0jlmkqkjrffspny20w6yci319ry63sjnsychz6z9gwacy72fz14y"; depends=[]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.14.0"; sha256="0whm9irlfmjamsjcjbxb1c574g60iscx10f498l9vh857iv1q8vl"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.12.0"; sha256="1j79sxx3ig61ny8r0j40m4fba5rf61k8rq23b5w6rcq6zwysymh6"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.14.0"; sha256="0h42jvnmfdr14glnlspgiznxx5qh19pn6abw4qyf2q24yps5hrpd"; depends=[]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.108.0"; sha256="0i48h84qpcwraj8rhmisk6g7l6m9wf5a4p5pl6kr0ipfpr6fnh2b"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.2.0"; sha256="0xlqp2fx8glhykdnc38mjsxjc78bb3q72jx168djq2r0z3gxivai"; depends=[]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.0.0"; sha256="0lcmww0pyx3pjqnhvkdz9zv5s0cbrgxd7hvf0fz7hkcqn3sdw2p6"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.108.0"; sha256="1sw1i7i5hi1kx7h9nqbnxb6h4wl97yfirsfw4m9sb879ycbwq58p"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.10.0"; sha256="1mka0is34lxg7cyrsdahkm11xnvlz17qk7bs8bwlkxc7gz90aj3j"; depends=[]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.10.0"; sha256="0lirsd1875v3qkmszj2pbaj8r552ndlvxhfhbl62rwsia5g5i356"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.0.0"; sha256="03cxc5bs8q27n8jrclnndgw02mjqf9wn4gc8z39x2bd4gwhjjvpv"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.2.0"; sha256="0d0rns36wb57vizgmjwsjmgb3qgp8ng31d81n1z0wzhdwrdir9vv"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.12.0"; sha256="1l3xvgav4k3d5xn0wa0046dx2i395gndvwh8ni1452dx98wj8xlw"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.10.0"; sha256="17mcl8850pzfr5lmdis8659kfbfy63qgp61h3wrd1nbqn0skk5q8"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.12.0"; sha256="1d4ycz9di7nqqpf2kcjaldg49s8jfvyfgb5q5i1ni68grzfi6p4k"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.16.0"; sha256="0gs7793q5zbgiynpvkq46l0yc862sfy87090jkvw1m6mlci89qkk"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.10.0"; sha256="1cbqrn54fb7jqfaswlvq4ljshfwg08ra07sh1g4dpv0nb2kkgv18"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.2.0"; sha256="0j0ilzml2i0j7bql2qly14h1xnrvdar65fkaxkvv2ncbyxgisiky"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.4.0"; sha256="0gw78wm9s8mz87zidfm49ly79gws8xfd7y4my4k39l1caqhlzbdd"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.108.0"; sha256="1q209v42ncczqwfmc71i0s3x6axlzqi3k474xccnhpsxcaz3s0a6"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.12.0"; sha256="05mplbzvwfqnn8ffdha1s99bhkq537vsmk46zq217cn0cl4csqrl"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.0.0"; sha256="1ggr9ayhz3h2x7g4n3l3pnnhdznw1iyp45n8sixp90ha9133hv9b"; depends=[]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.12.0"; sha256="101xq53ra360fhifn274nmdsbbj7pralhhgzzy0pr00a48x68lwc"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.6.0"; sha256="05g6qn1zkbk6daps9nnzqnn748qxda0avi2mbzsrcfqp231dkhs8"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.10.0"; sha256="13x5hj6503aavyv4bygf26krvj8ppwaalrhizwylkdn4zglv4nv1"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.12.0"; sha256="1xsas3d0n6h5xy03ybqy82cfh1gq97lim33mi163j598yhd1c6zs"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.0.0"; sha256="07awll0dmi7wnr5w7nc89g1mqf6b9r2mw858x0vzwkwf58qixqh0"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.12.0"; sha256="1gngz2a17n4lmcy59wcxywlgarp9h985wzmxz59vymx9n3in5lj5"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.12.0"; sha256="1ic7xdlfw0mikgmq961dc58sqfiyq2464q9w49hblcl25gf2pxi0"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.12.0"; sha256="1jiydpacyvdvlynlhcqrnc9xysbvn755lzrcz8pm2h79wanpcpsp"; depends=[Biobase lumi]; };
MEALData = derive2 { name="MEALData"; version="1.4.0"; sha256="01pn75kkvk6w1xim9hwqqpjv9gb1g7a4f4110hhllabhih3ygjlv"; depends=[]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.10.0"; sha256="1vdmh5rlygjmrkzy599rcr90anci3dzzz666b87b2w3z04vvyyqp"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.12.0"; sha256="0c4b69dhpkxarbna63dzacm81kizfdm425xmcb4xs0zs6jv6kj4j"; depends=[]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.10.0"; sha256="0yilicgglvb22gl5zv7rdjc5yczfz7kvzysnajb0qgpw94ha1wjx"; depends=[]; };
MSBdata = derive2 { name="MSBdata"; version="0.12.0"; sha256="1g0piddp8qpqf8nncsv73zymad5qmf2hxam44sn1m6227m4r8xdc"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.108.0"; sha256="0hw4f6syk1m4zxr423cx7asahq1lkbi7pnhspda7m5127fs5ikxa"; depends=[]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.6.0"; sha256="1ws6vn9pg1hmcyajrvyg645glj2khg43v75ppn72ylfysx8h86yl"; depends=[MethylAid]; };
Mulder2012 = derive2 { name="Mulder2012"; version="0.14.0"; sha256="0ah5digpg8j3dwhqx0gqf0r46vwpqmglk89k4h504vn18ff99vbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.10.0"; sha256="1pdm201xvhhbdd2blrg2yxjhm00pqvkxk0x1saykb6rrdq2zl16w"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="0.108.0"; sha256="0bk50jfmbq8p8c81jmcy85xqnqrw2amsa3f7hdnkj36k2gmqzzyf"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.12.0"; sha256="0s0brv5k92bhls8flbq8qbxs53gnsgibr9mqb3jkhjz039ir749s"; depends=[annotate Biobase hgu133a_db]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.2.0"; sha256="1bksxvax6j9wxjszkq0cx7jx84i14qb9dqlgjahjr559slkqbzmh"; depends=[Chicago]; };
PGPC = derive2 { name="PGPC"; version="1.2.0"; sha256="0im1s07l3rbcwmglm1vw5yq8qp307bbbkij851cbs639wlq7s22w"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.14.1"; sha256="0p898qdp5fnfads1n6rlwi6c2zp332m0jqdw21fsr3lx59d3s8jv"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.8.0"; sha256="19b2q9p76cyjl8dgmjagdr9zxr2xfinpp4qr26772s7bsxwq0rll"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.8.0"; sha256="0g2mjiyv415n0cl0nrj5va61f5pf9wdv27q92xsbzp0fgybjd4hy"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.8.0"; sha256="0zhrvynj3my4pdd57nybw62jkaqm039i7vm9v253qzdaf8h0xs3w"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.2.0"; sha256="1i2qa0rd0ncx77cr1d3f4wb939na5ycpli3q3d8k2l027nl4rjks"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.10.0"; sha256="16k9nvxhs80vfcvjhr3dssxjq53zlm1802dkr24icngpnfmlwnj2"; depends=[]; };
ProData = derive2 { name="ProData"; version="1.12.0"; sha256="14mrgfxk3jrzy3ghdcrh8flfkm4b6xi42sjb8sws57jfcda0zd2v"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.0.0"; sha256="1gsz60vg8h0w13v29bkj3pczivn7cpkg515rl5rj42vjxbw4mnsh"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.4.0"; sha256="1l0m384swvnxz4jrcgzc0a4fr03g12by1b5y9ncwdkwrz8imr52q"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.4.0"; sha256="1sp8jsjy0gji38sx44qdrp9v0s0inw0r7hrgwbjvr6vn6xmifg6i"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.2.0"; sha256="148rgjgj1fkvc4nw7mszhc2dagljhx672vpyvldjr4cnkwwd9vwz"; depends=[]; };
RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.10.0"; sha256="0bfpr197gjhwszpmvdfkmfa92yrc9jp567h5whzl0mb687k6ax3n"; depends=[RIPSeeker]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.12.0"; sha256="1fzylbwhqn5al98c1jmdj7bzn7np233h617hbzcxblknaglafv0m"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.12.0"; sha256="0dv23vr84xr3rjk0syx9d1x9zj2d42rl3yfsbh2aaf1rcrjafc14"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.12.0"; sha256="13pb2ljr4mq741vc443r573ynbynjsrhmas5gf2qnyn4j4wj5bra"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="0.108.0"; sha256="0sjw006kzikck8kdfvpqyx8bkhmfcbz363imgm72avzdqn7z5430"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.2.0"; sha256="0gf5l0mzihhl4rhfqd81g4ql8pvwm2lgj9qjybfp94pr3h9kkfvx"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.2.0"; sha256="0kkg0ds8p5rrjcdzq81g1bplxl685k5iki9w11kwpkmnnxslf5f8"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.2.0"; sha256="0088cm640mzbzbyj1pmvi35l0s2zpl5x2pmhj2lz2zjp4dis2g3p"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.4.0"; sha256="0qhg1dx77xarjzb41dpvhlvl9aqwsyscavk3n3w33zpn1r087v33"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.2.0"; sha256="1grrcrd8lsjfk056r018y2rkn2zr31k4jc854mllh7sgpg0jr6br"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.2.0"; sha256="1c7j35jn0076v3pv0h2yiphl2b9ga8hq0d6xb6hm7jasgq4i4w25"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.2.0"; sha256="1mfbq20s2zp234arkqy0g5km7y8jnymwnm4vl13vxqqcv12f3kr8"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.4.0"; sha256="0jxr2g8x5z4vyhs9n3ciiis45bs3jg3vg1v4mwxl4v4gys8p3i9b"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.4.0"; sha256="0ag3kmh2zfg9rqpmiih686klpcqd05l2cf5zfvg0vjwcim30xph2"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.108.0"; sha256="134ixgi809nmp54p7h94878pl61w3djrizvb32cb228a6djc1aj4"; depends=[Biobase]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.12.0"; sha256="1hzgq16mhrd0n7myav91ykmbvi3r71g625x52lvi61shjism5jp7"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.6.0"; sha256="1dssr1d9md7xl7fm1b537wxsa1bqqwjvb8mnrmqwl3ish0asy525"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.6.0"; sha256="172rbvi4gqsygb7fhdymzm0a2r4wyikgzfaxgjj4bwkl24lss6ac"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.6.0"; sha256="100dzzmmvmb5s43hckn286waja0qkd5rhba0cas3ifg5n21inbyc"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.6.0"; sha256="1jdr4vz4dp4q1ifjz38s5i6lwdvaws29176679m0xsckmvw8rlf8"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.6.0"; sha256="0bfcs51lmrm5ydd5zbkpkaw69ziq3yg00hi0kkcjrhk7nn1kjp66"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.6.0"; sha256="01vwk652hhh6rc6l0q0ylnzh0ng5ck91kki37qib7c714fy6f1fa"; depends=[edgeR]; };
RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.12.0"; sha256="07jkzxavpyg54ddh4xmzxsilcrr8x8w7lj6c4s02s8j23rxzxi2h"; depends=[easyRNASeq]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.6.0"; sha256="1lhc5c6icys4qnsbc2ixck3h63fsa8pnypam5k6wbvw79afr4xnm"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.20.0"; sha256="1ny0fdgx2kv6hs0rqnc70aixsa2cs7i2r17dklv529iks49i3n2n"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.10.0"; sha256="182agiw245zrb7lbyn1c38w1kljqs73lkvhvrlrilww1bfhwlrwc"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.4.0"; sha256="1w36157kdn1fji5pgj75bf88isfhvavpgyxnm9dfnzz5r1qaxx79"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.6.0"; sha256="1rsagb2nlc8airrdql7sa4rl1h34nhmds4lz0yx5i3dca8jzqn61"; depends=[]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.2.1"; sha256="143qp77bhrrclfvqqsk86cz7xqsnn5wfi41z9hp4klai0dhgk68g"; depends=[]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.12.0"; sha256="1cqbprdlrz3yz1zjjrd33wy4ybhkfq943pv3pi0bx4yz9gqc5625"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.10.0"; sha256="0sqdgmqs3ds3hnfn7nmmzhs8m5if8wy8rrfp7q76qhz7winqmqxh"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.16.0"; sha256="0nvxix2hsamcffdg6zqlvavx6l41qmfz7q1ycq99rjmv4rznl1z1"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.14.0"; sha256="16yisl8m9ggb995snsbhsfxxnqr2v2d5k8ay9w2hipkacaiskwcm"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.10.0"; sha256="1008i15x17k20596da1ai2dxqhyqi9v6bpskd0c66xvhnifmzpna"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.10.0"; sha256="089ddz2w5kqn3zc07ji9lb7k6msd7r4a6j6aymkx59d10qlx97f6"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.108.0"; sha256="0zkawybz6fyfcsga92vw6mx1y1qb6nrp9qcmjvd8ki9phhg7k8yb"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.108.0"; sha256="13ipkl1rd2s0vdz32jp30hz3fz7d9hmhfx626jy9q576iqpqb94j"; depends=[Biobase]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.10.0"; sha256="1jw9nhylj82g5gmhl1a6pirf4jyb1i79mm9a3afqrcgv55a5ksvp"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.12.0"; sha256="0acijg56wx91xqrmgqp1pk8cwl3wf5j4f8csdd9p46frlfa5iw8c"; depends=[TargetSearch]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.4.0"; sha256="1pihpj8q0vrhwip6c35lnv78r3nqcs1p18npb26bxhv02hb8cc6i"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.6.0"; sha256="0lpmrqmgcv96rbfylgsaffwwp5qqnj7kmfniahhj4zsxyjsy90fg"; depends=[]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.12.0"; sha256="00pdinf4mnl5mbwlzh7vwqw775ag2v2g5b5lqnhmxsnyfqsxgpb5"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
affycompData = derive2 { name="affycompData"; version="1.12.0"; sha256="1yz3y8y169qla8x194zlc3im43827a7233gla6arv552yg3fj703"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.22.0"; sha256="1zizi0p3r3y9h6kk2a1hci9x23i2wbq1krvl9nxd6jzx09fq25sv"; depends=[affy]; };
airway = derive2 { name="airway"; version="0.108.0"; sha256="00vxi6i9c5c14gfqm5w9q6lg0h1hb96rfm8jqsvw81lpqqlnyjgd"; depends=[SummarizedExperiment]; };
alpineData = derive2 { name="alpineData"; version="1.0.0"; sha256="0s3xls7b71xn6f9fsqim79cnv4mf5xz1dli9rr4ralzllvh9hm9d"; depends=[AnnotationHub ExperimentHub ExperimentHubData]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.10.0"; sha256="1fzjic8prjwpx43imm73g0znzry42rlziyzr5n6zkbgqx44kh398"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.0.0"; sha256="1y2n3xdaccfmij7jaxgzjh1bwvaczp8wsd6757fm8mn1qgalgjdc"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.10.0"; sha256="1pc4av4i0iwxg0v5aqb9rn0m2z8vnqqwxs57x3nsdirhl7pv92qm"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.12.0"; sha256="1kknkispmbxhwikhl0b3g2p0885gm82h3bdl6id4rwxvli86db8s"; depends=[beadarray Biobase]; };
beta7 = derive2 { name="beta7"; version="1.12.0"; sha256="0lm2lz36lmz6kxp1ia7cfd129kif9a2vyn2cngjsvhvm2pxplrl5"; depends=[marray]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.12.0"; sha256="0dsz57a9si7i06nwvmvn0l65jhc1xbc3ywjh1z32smm8rvn8x90b"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="0.108.0"; sha256="02fksg7kpb9knj7f47l0dbc016min91xf9d5xccpa833wylylyjj"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.12.0"; sha256="0smmvhb38z6wa7inbg5y8skl10p7yybq9qh2847xpzdnivldxfwa"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.12.0"; sha256="0bznvksrmpxp0ba9md96ch2qsk67jyda33b74bzk0hrxkijhm1i4"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.12.0"; sha256="0sghqg2fs7khb54x2p3mlc7mynbp417bccszcij9gq43njwfdra0"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.12.0"; sha256="0pg862q0m9m51iqk85gx9ihl17ld0x7i7j39g0y7bcvr7cy1djrd"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.12.0"; sha256="0pidz7safi6z2nbrz2wrjqx1ygyxg6ggagv4sfdy53ym07lwfdz3"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.12.0"; sha256="197g42apvsp9vaipj4zf3kma90j8zsvx9b8q4crdl5czvkzmpixa"; depends=[]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.12.0"; sha256="0amg5fn0dprnz5wwjacm73xbih1bbw04f0vm3rfplpiwqh83cq1g"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.12.0"; sha256="0m0dj3rd7m80la8h58s1lfxfkmz3a242vp3i1yiv9y6c0hca7yq4"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.10.0"; sha256="0l7hnr6w5g0n0ma24xm57dlqdrrlrhm6a4cw4p65hwn9djxxiz1m"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.12.0"; sha256="0rzp8a210vk8j9nlf1g228jsccdbabl99jbd27qi90bbs0kdnkp3"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.12.0"; sha256="17r030iajkaash8jfzfdb7d2xfd5mn9q27mkc11dycpqbji61q1q"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.0.0"; sha256="05raawlm17vhiap34z812g1ri5yc77h7qs4lj1gfk1kkcpj2knsf"; depends=[]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.12.0"; sha256="09xi5fvr7cigs1qs98phcapzqi8jam34gky2pxksi9gkw2n9j451"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.16.0"; sha256="11hyhddf395hyypxsl8na23pwcwlnmr639c927wxqibxxp1lfqsk"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.12.0"; sha256="03qkfk9mxz510lmr9spv74d3138bvfcpsgp0qnjw3jj2xiwn4jqq"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.12.0"; sha256="1cl725dhyh81rsxgv2icfljczbcgsnqba383gjfyf06d2qarby1y"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
charmData = derive2 { name="charmData"; version="1.10.0"; sha256="1v760z5br1cj5dj97ayl68dv202086v2mcnhn6bpv0kf62q9mia2"; depends=[charm pd_charm_hg18_example]; };
cheung2010 = derive2 { name="cheung2010"; version="0.12.0"; sha256="15z6p2kfrbs9wbsf7rqmg53k5i6gja5hix97sl9bj7y3jkxws62b"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="1.10.0"; sha256="0zcj4pa03ny4b1rng4ima23jc6sqvsznp52d59vipnqd4jg1ic95"; depends=[BiocGenerics GenomicRanges IRanges]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.0.0"; sha256="0d0g20mg36mxldl9f0bzqbz9vzp526pqy501k0g7bmj5sbgd2p3s"; depends=[]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.10.0"; sha256="04bkk8360pc0sp8n1z16smj888gbglgghklciwpzk2d513wwapdr"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.16.0"; sha256="1kjlw5qi6yvk6amvnmjjnr5ypvqmslmm9lmkgdgab3s38hyddj2a"; depends=[Biobase]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.10.0"; sha256="1k957gad0xlv0nzcimypf32dpqvldc1w8lj2a274y8spb66imfnw"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.0.1"; sha256="1l767mg3bknp91is7mqb13w2kpdihf4vbphwhqyvmzsl5rv2vc7y"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.6.0"; sha256="1l1lzkyrvpz334xda4z3mxh2ql3zhhmc376znrjfryzi5jbypnh4"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.0.4"; sha256="0xpq25rmg8bxwsvm35qm20l6b7a3kg5p9ngvj2dvnf00jn7vv2bj"; depends=[AnnotationHub Biobase BiocInstaller dplyr ExperimentHub magrittr phyloseq tidyr]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.12.0"; sha256="1qjmmxh0cb4y418rl5wg8inkj5cffniw7jd6vjj3j2yiaq9b5d6l"; depends=[affy BiocGenerics]; };
davidTiling = derive2 { name="davidTiling"; version="1.14.0"; sha256="0n7invq1j0lmrylzrggmlndj4ag196rhyn0lvi746p8sxzdapfaf"; depends=[Biobase GO_db tilingArray]; };
derfinderData = derive2 { name="derfinderData"; version="0.108.0"; sha256="041yq05x9d09n82c9wnwqa1rakkf4p1q3rs9vlacl45bdqdbdsa4"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.2.0"; sha256="0vvkgfixvs76cymz0nlyzp7sh9jzd1mcbl5pbnnziybwn5fdpw3g"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.6.0"; sha256="0xyvd8jdpn3y9s88z489cinacb4bnnp1jqg2aj7h9hhaj95pywsq"; depends=[Biobase viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.12.0"; sha256="1mm8hlivhcf9f01aqdcipq4wz7x3ga8znpcpi69jgh3iadf5x2xq"; depends=[Biobase]; };
dsQTL = derive2 { name="dsQTL"; version="0.12.0"; sha256="00nry3qf9r79x65scyfghjyj2qbc6ji0l7c1rayrk5s6pxj0v0hw"; depends=[Biobase GGBase SummarizedExperiment]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.14.0"; sha256="18ghl3l7ps6xz90gyrnz3zc0rba99yg8ry9fpfbv7yni888hl9bx"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.14.0"; sha256="1s03jpb83j8xgwxdr5z7233175jhd4w7vikalxvh1mvk9bqa8rmk"; depends=[affy ecolicdf]; };
estrogen = derive2 { name="estrogen"; version="1.20.2"; sha256="19f1gjppzfg21ci6jdxgwv7h14mm89spnj4qr71pwid0a4kiq6gn"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.2.0"; sha256="11c1swf7n9g1vnvidmcjpvzj3hgv4dgx6civv3plvamzfcz3jk29"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.14.0"; sha256="1yxrmnbpi706q23n6jc3hngl378w41dkhzcy4gqlbcgwdhbi9yq5"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.12.0"; sha256="1ws09sp07i26ky6pwambw3bvnd2qx2rsvm055hp1j3vrc7qvawwb"; depends=[Biobase]; };
facopy_annot = derive2 { name="facopy.annot"; version="0.108.0"; sha256="1wxprfj0420qfbls1jd58raa7ff98fhnna804slagrs8r2ka7kqb"; depends=[]; };
facsDorit = derive2 { name="facsDorit"; version="1.16.0"; sha256="1dla6vv0had55afsv2h8hizkqbng7schadb5w5nbk3va7hzbnjzb"; depends=[prada]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.12.0"; sha256="16n6kfcq33byrn0xx43bn52c0rbzw3ars9wxg9yd9rfnf23scmbb"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.16.0"; sha256="1sr672f6x52rhic69i8cii04cd204ra0lhpxh0dqm78yxkp5mqxc"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="0.108.0"; sha256="0fdsaymwv057sb0bddkaqz320wm6bk1hikwy9js4pc5mbi2r9q1w"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.10.0"; sha256="1z2q9h4arv8a89a5g5j5pzp1k02kmz1h6g0zrvgvz04ys411phv3"; depends=[flowCore]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.0.0"; sha256="16sgzy2xpjnlm22ca3fvdcfzlfyylsxpjzbv8xaz3lmb7gf8fqix"; depends=[]; };
flowQBData = derive2 { name="flowQBData"; version="1.0.0"; sha256="1lyj5xkc70l3szxspa6gasnx5g4sv6azwzs0b1cvs5y5kngxpns3"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.10.0"; sha256="1pfy1f0flkf22a7ijb2xay6za80y9ny5ja2dy6p4z9w8cqyk8vqp"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.10.0"; sha256="1iznkg12c50lzj0xj1fz92ybqap09fysx0f71g84qpmdh7df5aap"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.2.0"; sha256="0h596g0j6by70ijpli9m2wnxnj7g6gz92vv2dl68s7jnya4n88s9"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.12.0"; sha256="1fn4by56fqa9dfyb5a7pjv5f6nsp8gybgp572dyl3jq7bp9imr3j"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.12.0"; sha256="1cwnik2znx13i4p8g3wxyk19r9pd3flxha04b0y4404pvwxa7gac"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.14.0"; sha256="0yshv46pj4fjyz49azbrzdqjzppkx4548fsb2k77dvypim6hiiwm"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.12.0"; sha256="0a5gmf667wr1vx2qalz4fvk0c49m6590mvv96ijnrdd9p6k1g450"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.10.0"; sha256="1a4qqpcid9g1zx5zrpcshlwm8xk1bbppanyfpx077sa0ifpjcxny"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.6.0"; sha256="16dqwb7wx1igx77zdbcskx5m1hs4g4gp2hl56zzm70hcagnlkz8y"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.6.0"; sha256="17yr9zm3kk7744sdiyyls4g1n6fhwfq1gafj1713viygk46ff0ps"; depends=[SummarizedExperiment]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.4.0"; sha256="1vrb5a62p6wm9vsf7q9hwjr0n5yv5cqr3z50jd6ymwxb9jy3f4vg"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.16.0"; sha256="13lhfhagnc17yva53ax0847mzrlp65bsn8b9haq678kjmd0ry25k"; depends=[Biobase]; };
grndata = derive2 { name="grndata"; version="1.6.0"; sha256="0hqli6f9x7amhlwgszhhvrhbazb3ga0r31107n5v5nxfwqmbmgwg"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.6.1"; sha256="1az4dw0hwh2ba1v9k5zajgcicxihmr668cvw5qqka14mvh1im30h"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="1.108.0"; sha256="13rh4bk47q2nkfgj6sbwbifcidmf34i7s4dhymr8gabplxfcy9mj"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.16.0"; sha256="1aaiszx3dhphx62g246w9qngadqj9azkyk7k49igsng329mz8836"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.16.0"; sha256="1awqvkxcnb3zmi5cds6krs4hc4q90q7kn592ir9a3ypsqsbva4dz"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.16.0"; sha256="0cgwy7fqmhg947vfhl4cymj5ssb7avdj330cj7cjil2zilcg3a52"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.16.0"; sha256="11y06piiwgh1v6c489fkjxf8yw9zfc0llrhhnx2syhscfdgw94md"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.16.0"; sha256="1a0x1prw77d1lddlbdnvqank98xx8gd7a1a8n6c6fwkjynxn32ha"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.16.0"; sha256="0rppn6x3f2fpr369mv04pg6pvbmp0j4lnyj84l0vvmqrjyij3vqz"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.12.0"; sha256="01spjp27icgfjwf3cjvz8w5kg6gpqmlkfxdm3j2irn9qvpphw186"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.12.0"; sha256="1dfcc1v22wbzbbsrkjvy8mhv6brxisz5yv1g7zrpswnmchbqxkvd"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.12.0"; sha256="1ig7myihlmcd39g6qqmbb8fm59vpizfxps4x8pbj676p1578iaw9"; depends=[]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.12.0"; sha256="0bnl9z34xn4frqlc9pvnvp4ng1ky0vn5zvjwjv6hc6dki14cgfxp"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.14.0"; sha256="115zgss29249az653hw2cd02skmr9fbivsh6zj837m4scnbjwpqz"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.10.0"; sha256="1whpk1479qhlxmd44bhpsm1xlz2z4pxn918kpwis9mn1inwbmwp0"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.14.0"; sha256="16ad8syrainj8zpp9mhqfxq8xsn9jfdiyf29zjhdb4pnci3rqf7i"; depends=[Biobase hgu133plus2_db]; };
iontreeData = derive2 { name="iontreeData"; version="1.10.0"; sha256="187d9mdamp3kb1nvp0ckhza6ws4ga9c4fw35isnc1jsssag1pf7j"; depends=[]; };
kidpack = derive2 { name="kidpack"; version="1.16.0"; sha256="10cab09hdyrndnjgazbvlm3c89qmmj458nbvdd8liiipq1r6f3qv"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.10.0"; sha256="0s9brwvhmmylbs7fjkg4g72kd6kdycy0qmk5hgldz3n266pna293"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.10.0"; sha256="1n3np631cbdvd809af4s9ngrz2lrvclb313dwz6zhjsp0y0gs6n9"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.14.0"; sha256="1bagqlq1j6z578zal05xxvvqnfi33rrlgbdq7sj484wyr6jbgxim"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.12.0"; sha256="1lqc2rcsyqzn9799ak61dgrb917f9cfgn7x7ck0d4629sdczm7x7"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.0.0"; sha256="1c1g17q3ffc4k82ppb1vzi3567wza2q8p06ahd9xnni5hmb5v8jv"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.6.0"; sha256="02vx2v0sdzgwzpcgcnszs8q4jdimsis6lyfq6f4pm4b7fccy1as3"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.10.0"; sha256="1pn0i0bhjs2kyrafafhh8kfgvs0x6nnny8p6zpnivyn4y8hjh5lf"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.18.0"; sha256="1ijr4856mdfapcpbmndxhllsvmhih1cra8zm6k9wz1id29b12s2g"; depends=[]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.10.0"; sha256="1f2f7798j1pc74414mvx48w6bbxbsk2rm7l1298sfl1av914yl7a"; depends=[]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.12.0"; sha256="0k5vgccwfnybbwngbzyz1j98h9jwidv3ypfymz01yjr6cahn5fgv"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.4.0"; sha256="1gabbbvnmw38snv2zn3i3763n4r38zr9rv854snmy9fhykry0rlq"; depends=[]; };
minfiData = derive2 { name="minfiData"; version="0.20.0"; sha256="1gg2dg3s92vqnigdg56j91zifv2kl9asiqrrbjmac0pyd0vi555c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.0.0"; sha256="1dmjdfnwia8ka2lya1fin4kj6anjn9szhphnypzhaxxzmli11x2a"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.4.0"; sha256="19xlsnfcr9fh7f3nmd0aj6sd03c0bd6ibfbx4rkxsmgfsdfvidzh"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.10.0"; sha256="1br92nqvfhc67dsz2b10mzp19rk8bbfb9zaawk6n4pyfn4pdcn4w"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.12.0"; sha256="0fgb8ifaygs31ck0xybwr5p85zvkw236lilzcsn9hnsdp2zckkff"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.12.0"; sha256="0g2g5kpgpv436k09n43jilzb539faqvp9k41h3xfgw8kqsln10fp"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.0.0"; sha256="08kz9ihbjxfi64sds5s04ay9g8y1y6fjyaxvd2mvqvzwd3hykzqh"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="0.108.0"; sha256="0gcs6r3z40lc8rsnlnkf01qbnws7bcvi19gx6r2jrlbma14sb22f"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.14.0"; sha256="0330ahsx2a5rbqp8kswrq5r85kj5mvv9j5w0bx648isya6j5fzsq"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.2.0"; sha256="03f3jlpl2q9kkb1q2bzxda5yddgpwhhnbb5y209j101yf2z1qv4b"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.4.0"; sha256="02dzwsjagrwgnrsp16h72x3sgl5gms8xnv0vjbfm9m6ynjcfr2y2"; depends=[]; };
mvoutData = derive2 { name="mvoutData"; version="1.10.0"; sha256="1hmsk9zlxrqf5znf0rlj1rmsdzdwvr8xnxz6q85ggrr1l9n76g3c"; depends=[affy Biobase lumi]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.12.0"; sha256="09wisspjxaim23w0lhbk5sczghfjsn00f7qc6zp8d7rvp511c56k"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.12.0"; sha256="1ibf9wia8vn0vmg46rln7lkpd1mm5ahc3cb2kxkzinmsvmqbi2nn"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.2.0"; sha256="0qhmrx4gxprjyd79y3jrx3s8ya6f64jq69lf8ykwgr21h7nsacbl"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.12.0"; sha256="0ib1n90k231qckd4kv2wjkw7xxc88gc8h651r06rqalgmldfxg8r"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.10.0"; sha256="1n6dbsq6nbalv4iil2qycwzx84710sz16m2qqq44cgjw2pqmp8ki"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.10.0"; sha256="0gr4xc1kah9n9j8q2yq3an780p8l8qgrba06vc8yw28q9s14lcic"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.10.0"; sha256="0xr0qw6z7dm7brp118bdjh53j83pgxgsbfyl2b1s4qdcqp0b0j5i"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.12.0"; sha256="0lv60jkg8zqhbz1hnc206zmxpvz961plgj3s2zxl925pzqgw3jdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="0.108.0"; sha256="01biimjr6j6z1plgsbq9qxk4bzg6mc5v0f5lzwwid8r0n6aq9nfk"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.0.0"; sha256="1qqs5n1zbp94p9g87rah3ikdl7gir0m76nyd7ccd232dxkzyl25r"; depends=[proFIA]; };
ppiData = derive2 { name="ppiData"; version="0.12.0"; sha256="05cg5hiv314a88wfwnd9milfcin0xmsvvn1zzxqhrj8k7j0smxq9"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.10.0"; sha256="01z22jg4l2l55nrb547xih5ra3rcla4k66j1f210rrsl4r5j89wn"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.2.0"; sha256="0xg4xwj0m892lsix27bmi23dssl6fx3y93g14mwnlpq430135j96"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.2.0"; sha256="189iyjfaylck58w0pg3xnrpg6yld304dgprpsvfjhmrc306v1q79"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.2.0"; sha256="0h9909wl798nalf1x8qc4p0yx6851r4pda24y7vyxvy2jrrah3kq"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.2.0"; sha256="1ncri2z1sz4kb0a080y4xhf7ah3szp890h6b3xvmc5c6i8h2pysz"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.2.0"; sha256="1kffm7b9rhb6jqsz354almakc2dc5zxczhzg9l2wj59knw6527js"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.10.0"; sha256="03xx41j8w6lip7rsj0fpnq4jrlmhki63wqnmfh9816gc8g7a5yrh"; depends=[affy Biobase oligo puma]; };
rRDPData = derive2 { name="rRDPData"; version="0.108.0"; sha256="05a42rayxnyzajzabvgzrbj56x7sax96g090r529fd4055582s52"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="1.6.0"; sha256="1c95166shc6yflpgl0wfq26mmr5qypiwhidf0vfkgpp0zk30hfd2"; depends=[Biobase]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.12.0"; sha256="1gc5vpxjgnjpar757x7i5sk7kqy5jhvd11kad1liwfnz694zgkn8"; depends=[]; };
scRNAseq = derive2 { name="scRNAseq"; version="1.0.0"; sha256="0zh3bashqamivddjahaisl92d8ipzahki10wq8sz6myrb57iavlx"; depends=[SummarizedExperiment]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.6.0"; sha256="057rs9s9lf6z3z3k1671r0fzk24jl8pmn1zn0a8x2n66d3bpqv4d"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.10.0"; sha256="1g350lys9gdrfkwsmb460y9pbjkzcgxwn22xfsl430mblh09ryhm"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.8.0"; sha256="0fik3w4qs9a01x54im5ckjwywvr1w0jvcmb0x2ym0xba4q4ypvlv"; depends=[]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.10.0"; sha256="1nl0qi64kihvvp7kkc7y7zl3m938n7mrkw4vrmdshc00j3ydl1k0"; depends=[]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.10.0"; sha256="1c7zkhv1ijxxy3qiq6rwniay10kqybfqzqysfb94wasp688dixwp"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="0.108.0"; sha256="13b3c66ijax8d3cw26wjmx2cjnh06z8dx2ahq0xwic3rj2r8ax61"; depends=[]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.10.0"; sha256="1k8rck49bpp7h2why7fl6bvhv67krzhc4c0ppily3ah2s9vyxm0a"; depends=[]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.10.0"; sha256="1vb3c0k3zrkng95ym4h17y48bcq6xb4izj326w4blajcfyil7kdc"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.14.0"; sha256="09gi8z5ay7hyikqr26npyhim4dzi2hkidnis46ckzfqx9dlar94h"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.12.0"; sha256="1ynqzxn8a76788chcfq1vw7mrsm7c39qdjzjr42x4lvabr32gd9p"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.4.0"; sha256="1wbf4488b6zmh72m3zpq5la8qybn6gfr89k7r4572i0awgyxccws"; depends=[BiocGenerics]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.12.0"; sha256="1gbab6zlzc7f2ywsv198yyf9fr2yq2a7y942mjclfg7ji0zf81kw"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.12.0"; sha256="06r5vxqqglrgpqyf3837kxl6rb5qcxk61b1g1vyi15kb7rzz0qyp"; depends=[AnnotationDbi]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.2.0"; sha256="1786gqxz4vhvjc0cxc2gi5hz9wnvspb3kmmap1nssjnd44cq8ypa"; depends=[]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.12.0"; sha256="0a6g2lnj5m958yagnkn3fl4x0fw6m4gp9xq0jsv6z7ixs2p73xin"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.2.0"; sha256="0618jzzacpl7cipcby5v3rd2rb3x9vqiaf9i1arn83h4znwlnykh"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.10.0"; sha256="1ndqbqisfr2vnfqlmjxvwvkcbs042rqvsqhlpa4pg9l18nfv3zqh"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.14.0"; sha256="1sjy4c6jvhpjpr47l0mpa7mms65jj7c1fhv2dxiqxap5pcxl9s40"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.20.0"; sha256="17bassc4xn9amlsa33rscgbkk50xwrz3i3vlh9ym1184wq14jmp8"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.12.0"; sha256="0s3458lvcn7xpnwkygl426zqm7h35cl59r0rlp0znnrjvr3f16k3"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.10.0"; sha256="1085snsd7wsi9sjsqm551i2bnv8pf234vvz6xpw9fz0inr6m5wqq"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.12.0"; sha256="1rym01mbpn0h70q1c7alhnrqa0c2hb7xmr17qbsh130gqp67c3mq"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.16.0"; sha256="0xqlqi665ww3w00g5wv089ydjs74iy07xqzbn19bpdqnkypm83rx"; depends=[Biobase GGBase]; };
yriMulti = derive2 { name="yriMulti"; version="0.4.1"; sha256="1s1riipq4ck655m3cds6ffvzr7hg0aa2fhm8gax2b7hwgqr4xmiz"; depends=[dsQTL GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.108.0"; sha256="04pbkfqb6l8qgxl1263jhhd7gm8hz908c47q5s1f1nvc3403dlbp"; depends=[]; };
ABAData = derive2 { name="ABAData"; version="1.8.0"; sha256="035h4yrna11d2g3iqnn52sv07ydgpa2my4bwcs4a9di0pf9rbm06"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.20.0"; sha256="1kz3k99dxam9zqpf1hg4z049f7dliyw3kg9cms1sma2yl5l7nj2y"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.18.0"; sha256="051hhfrz4fx28hbi7fycqqbnij9lxh6spj2xqj37nmqc8wx2qfs1"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.14.0"; sha256="0pxwvghyvd3c717lqixkadh79jrv0r0dl80ds688gxgw2pfcwr6y"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.14.0"; sha256="1ynwl9rfc0hdacvdmfdm97ya14jqf8q8w93m2vd58nh62p1jmprp"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.12.0"; sha256="0bbslhfipz0s5ill8p8wfr47ikx2lg1vi9h71rn0wx1v76q5sgpf"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.16.0"; sha256="06q8ixh2zwk4143ppnrdcvgaagzy33swsrlp8l3lqp943fnn2hil"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.16.0"; sha256="1nqdxp33xl2lwcf5lq1v1k2qnid5pf7wxbxldmr0rl6jxlm1r5va"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.16.0"; sha256="1j4czciqiaj2fqf7v5yd41ln31gl6sqs6s07i9pwyclhw66f3y56"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.18.0"; sha256="0bc2cdqvqdalq5hqhnnzayh2klnzqaw6micgsk35mai0lak34rpd"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.6.0"; sha256="0cbgmfciy9v81jfn60mw98csxxdmm3hfqdwyaigbagj949alnbcm"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.8.0"; sha256="1z7kcl25hpl7r7pshz14cm5j635qj451df1pfd9giygn7y9kpf93"; depends=[]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.16.0"; sha256="1yslwgw504xbplq16xnf610rs994p23xm9qcyaa9f0lzhqgkksap"; depends=[beadarray GEOquery limma]; };
CCl4 = derive2 { name="CCl4"; version="1.16.0"; sha256="0w1mxf7w1yk7kjqam7xdb11aj16pddk9wyfd1ps0nqagzvjsn1qv"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.18.0"; sha256="1zhkf75bhx8z0s4wpjyc0xdv9aifng25gpb8fkvncpd8lmmdg6gd"; depends=[affy Biobase]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.14.0"; sha256="082cwdyzq3h1sl39pn2c3ix5cp6mjczbvvdh6gii54181qkg8r2h"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.6.0"; sha256="1ln3s3zk4yi7qjjqnvxg12x7qlnz77k29nbjv5zbpdxdjyisnq4g"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.14.0"; sha256="1qi0l4rf62gzqg14zalcrisklfgbzahhzahyyd5q898r57xgif7b"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.14.0"; sha256="11ir7v1xlxwjxjj1dz3i7j1fmq9xnhd3qc7cxippr0w4867cw8pc"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="0.112.0"; sha256="1c6lvzjddm2sxxjz452nmaadhvaz684i3gyvmlibhqaxc9vr09mx"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.10.0"; sha256="0jlikfjgmjiizm28srbws7sq1b7h45gb22m4q19il13rdpn6rfls"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.4.0"; sha256="064hbkwxfl2sb4vvvmm44skd34g87vgw6nv0ml8vyhba5mmszf84"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.10.0"; sha256="0cjwyapqv4d6mncg4jy1x5qfz7sim9vqv6m007d0n05ly02qn4vd"; depends=[BiocGenerics GenomicRanges]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.16.0"; sha256="0bj7j6qzqq6zy87r1sxdnlfqvl5r6rwjm5pd09jf9b27r6bf1r44"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.2.0"; sha256="1f1dwqylch21kch88y96h41ma949y1xvfhj5ldqkn4fidb2f90kp"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.16.0"; sha256="1ppybav3ag2x75i1w58prnxvrmjp754ywwgm38kfw3vs55l0ijv4"; depends=[affy hexbin limma qvalue statmod]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.14.0"; sha256="02xffm790lchv78qwxgi0rfmk496hdc2970mm1maa7agy9wk56f8"; depends=[]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.10.0"; sha256="1gbvk32kcax4w143ry8w376gfglqm128sas0pnim4nc1ikd7b7j7"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.8.0"; sha256="0rkf6gwcvccci7hal5cxb04b7g8cx46ivvzplgfn5sn4idzj187f"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.18.0"; sha256="19bxaapggfx148qvi1jp82026psiv669iga370bqva4dhawgmc8a"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="1.14.0"; sha256="1i1cf4avmq6rrcvskj17gmplfa647fvmml86wkr8skhsj03z5s63"; depends=[GenomicRanges]; };
DREAM4 = derive2 { name="DREAM4"; version="1.14.0"; sha256="1z1cddkk8jspnm3h1d4fdc6v14sqflzryqzvvzd0z3fp4lr46vkb"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.14.0"; sha256="0jwddzfqfiimcfmz9jwari493dppyxnyf0fp2k2s1bp98d50bnfb"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.10.0"; sha256="066davl2ga9pjl12zcgchmsprx3hz6zsb2zpnrpbijd0yqv8fjih"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.16.0"; sha256="1za9anbfb36c1js2qhgqgxsjmkxfhkzyfyizzvqn1v31r101hsq7"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.14.0"; sha256="0315kbc8fsn95325jlr2b83094f4mnk4pc5sihw0n0637nfpy7ks"; depends=[]; };
DvDdata = derive2 { name="DvDdata"; version="1.14.0"; sha256="0chiajirlaf8b28nhr315429hp2x7mfff7fkax9kqrfz308xbcv1"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.6.0"; sha256="1fvfs8bnf41fz2skahj4gxczqkgspnga84rlsrgd0shhrkmns9hx"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.2.2"; sha256="1w1zs37bsj1c6ywvdbjqilg5wndnmysb0w6sbaashd39z6w9iwpa"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.16.0"; sha256="19id2z2mzjjnxa956ppjhjq1a4gk916cd7k9cqs39lsbxvknp7nr"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.14.0"; sha256="1bkgj1czb6ap7xx53bzwrd4azbfkpxcznmdvl4q7jgd34l1ms78a"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.6.0"; sha256="1b6cvzljgcpq9vzs92yjnnxm741ypjw13c9lnzh3qjv73nfgp5l9"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.14.0"; sha256="1c0zdhk81g30v7yq6xvhanmb550xdaann6f4sskbvy5fa6kb04gz"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.14.0"; sha256="081ki0yjdqngsdibpjnjs8lk10wfvgr9i5i99c837hl9wgfwd9v4"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.16.0"; sha256="09sb67dnv97ijljayiny3p45ddd2c01pd8pjj15sjjk8717lf65v"; depends=[minfi]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.6.0"; sha256="16wvbfym2mz9ypmym2j3j5f36vdj100anc5hpwvpzh9ing62b00r"; depends=[minfi]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.4.0"; sha256="06f2zmkqzkrhwdx58pxzcvkqbckzg9k6qjlngbmgnnb9mi0hx8l3"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.14.0"; sha256="19h4xvlsl61bpkdqqfrqw4iz9v0pnfxp1q8z9nn9m9wqf9cc3rkc"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.14.0"; sha256="0zsffyhd9nxsg3a34sd2mycbvs8dsw96pqn1jj7zw5whldjihjwh"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.16.0"; sha256="0s5wh3nxynxx4skgyxvbm4l7lk6rphcgwh71nr24a0a4jid0jisp"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="0.112.0"; sha256="10f5g78mqlzm3ygix8h08134k41c7k9l3j39q656jpdwmf3plkh0"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.6.0"; sha256="031x9w6xcgk30ihmgxxlxrn0xjm076s34cfyhw5pap6f3f0x8hi6"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.14.0"; sha256="1zqm9g1vib9r6rsj7wim2pkv17pl1136k3k5rxmyvgx7rl1sb5li"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.16.0"; sha256="15zki8i7mv59xr6rgfmf0x33mkvf8fv6h5ya35iydx5409lyaxm8"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.6.0"; sha256="02vwxdb4dsmx3iw3p8hfvigw67hrggycdxkqpkr1n03z6g50vbcv"; depends=[]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.18.0"; sha256="102hv9ivrmdjfrqnyg9g3qi4y2i9kdby9xswlq5l7l14vbgqxn6b"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.16.0"; sha256="1spmx6lc0cpcwcna2sm5mn27n66rxpzw30biq11ca2j7ax0phh8v"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.18.0"; sha256="12gi6idn1vgl13ir93ig60mmgfak5l35bgzc75paa167iqvfswff"; depends=[]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.112.0"; sha256="0wz7kfj2mkrg4q53w3ddj2l4didlmckkck5a80vk51pflfvxrdhi"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.6.0"; sha256="104ws2bpy865m2hjfgj1bha4ix6kk96ml085lksz9vszkxhi7al9"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.0.0"; sha256="03czwi1ps7lpjppn5mpfa013rna0z3ywb783a31yv7g93r97gqna"; depends=[ExperimentHub]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.4.0"; sha256="1c7gfhwr9g6hv0p3s4yd8v9rhjp3jmrnzsqsqq4ysc2i24nf7drr"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.112.0"; sha256="1qxg7650lbfbjl9p75clrybsdbzd0yzpi8pi2biv83jgqkkjrd0b"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.14.0"; sha256="0708xgm495a330h70yi2qd494h6gf0n46j016mw9bc4gzbb7aq9p"; depends=[]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.14.0"; sha256="0lah9l8gd5gs1wj68l9hqakcwha0rl88dg2p0zk92nff64jxn3pj"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.4.0"; sha256="0xgb3rrvgrx6sdwbb8gb1q8mgf0s2giih8l8d3hzvnxazh80qs8b"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.6.0"; sha256="08gkdi1lra9mn1cbsqddqn3pwj3pfy2yfgzay5igr7n1akfmgh7k"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.16.0"; sha256="1rrfxc3hzlq2i0z5j432w3s33ln56i91a06q49piisz06vviz6yv"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.14.0"; sha256="12mdy4rb8gzhgdqdwvf96lcxmi37wysyanpw1dym03vq6fxmcfrq"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.16.0"; sha256="149ip8wvbiz2k94rj6n1ims4iq7zkgicrxrkn059bvxgj5gm6pvq"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.20.0"; sha256="1s4ya32pfmz3fil7v3r8zm13f80cx5zny0ywvh6ln27a7hr10ida"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.14.0"; sha256="03mrbgyx3jf4ccapyj04akf40aqbmky03fgicgcaff724kwda8rl"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.6.0"; sha256="0ki62mfjk7a6nsk0079xf3w8c8an3syy5rhlqcmyynwab344mqm6"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.8.0"; sha256="1zd270pxiy1d5jr9akgvf77jbllw82flrhx3q1z1m0kds7xlb398"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.112.0"; sha256="0w1x4ab9i40y8jp3yhwcv0lyh83g926cwav77m179mg7n9l6c3lv"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.16.0"; sha256="034j38cd81fkay7h7fjjk56ywhvbq6pdc0ldxizrfw3z8hhacy85"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.4.0"; sha256="1difb3nsalc5rl9bbaj0g99d5sl3sjlmcy4qq0mddaagw4b5lyrr"; depends=[]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.16.0"; sha256="1z86ll0kpmd9jq5nq7fi2yhvp3ifqfmjk7gfpgd2mq28zw8rwn47"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.10.0"; sha256="18k3m8k0jdry8qih7nrd7sxlvpcv1yfjj1a6y6a2ifmjq23ymcsl"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.14.0"; sha256="0x0rl6iibspl9w82kbbv7bf9mfhs60j8ly7cxm908x5xfzwmms05"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.16.0"; sha256="12k305wv38grgdkypr7bvhxd1ca1vsxmyz7487yfv1nl72sla36a"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.4.0"; sha256="0wq5vmk8p3ng8snljrlkwx6vl38fnwq8fn5flymfnq1snvci22h2"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.16.0"; sha256="06vmzicndnyb4banfjv2mgy77cqqbdrx0y7pxyvvpfy5xl1kk3ii"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.16.0"; sha256="0jfq8pc2arpp5kcdhsgvz08nm7sjambh7sx1n204glqm61mv5rqw"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.16.0"; sha256="14p1ifaadmkpykgh675gk03aspc1159k8s9ksz17p6bxkwy2sb6v"; depends=[Biobase lumi]; };
MEALData = derive2 { name="MEALData"; version="1.8.0"; sha256="0r4c7vx2cpix5ryjv7314zf30ifivad7yj1wi7a0pck6rjbny81j"; depends=[]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.14.0"; sha256="175bzk0yrwhkwagpkvi8y87l8zfhgr44xkpkw4jii3whpyxgaiyx"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.16.0"; sha256="1110sgklk2lmvjggvcm3wzfipij6nj8brq7bdc9dbjwhiiqdv0m1"; depends=[]; };
MIGSAdata = derive2 { name="MIGSAdata"; version="1.2.0"; sha256="0vx8p949sxsfp9ajs4dwh2yf01l9lclngr7ync3r962knmd74yc6"; depends=[]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.14.0"; sha256="1s0fraym521bv35q2ms1v6jv23bvfypwkhcy8ffhf6k1lcr4q7gj"; depends=[]; };
MSBdata = derive2 { name="MSBdata"; version="0.16.0"; sha256="0lygk817f55agf4rvb85k50ns0cy8wckbqvwqb3w22z4plixyjjf"; depends=[]; };
MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.0.0"; sha256="1hgwcd4r8x489hyz747psyw4jfbia6yw5mjrm745z1yl8y445mq9"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.112.0"; sha256="05gjfd4vvkp4mdrimsxjwa3mgps1cwdwr03w1il77awa23fvqp52"; depends=[]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.10.0"; sha256="1rklalmjckm5ysvfjy4arqafabjp8w4495v385mgwrlv6rqa5yv7"; depends=[MethylAid]; };
Mulder2012 = derive2 { name="Mulder2012"; version="0.18.0"; sha256="1bpc74xiyh1az8nkgqpwk3pa2313r7qcxdzdqa7sr8drwhgj7hbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.14.0"; sha256="0764l9lxc64fjflzqqxyjckxrsjxk89k73g3kpdfmkvxdn7nchh7"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="0.112.0"; sha256="073g9krsmhdh3fygqd3rfxnakxn45nvxs0zr7k6xylq06yfy3gza"; depends=[]; };
Neve2006 = derive2 { name="Neve2006"; version="0.16.0"; sha256="0dvdq54jp5q59iwny008m1qyj9s6gb4blmzjlsnz3505ivai2mgs"; depends=[annotate Biobase hgu133a_db]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.0.0"; sha256="1wffaljwgl0r051bj5vf0wjch2vg5y8pkwgbhdg6k6c97pf9gyd7"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.6.0"; sha256="1dqhwz6jqgmnvias2hjlnj10c0chsvhj904rgvk0ch9y47v0f4yx"; depends=[Chicago]; };
PGPC = derive2 { name="PGPC"; version="1.6.0"; sha256="1nfkj3ipl52xscz8qpmaspydvfzsjacrw89alhxpgsb71d59nbkj"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.18.0"; sha256="19528l0f53nfnq1sdsbp3y6z5zx933csz5f72mh43408a6d384rk"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.12.0"; sha256="0s3dqm1yiy4svkb6cj6xf6i81cc0mai0xjlbl3jvqdpy7npl0a08"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.12.0"; sha256="14wqs4lxq1zav24znvqmkzbbqfapplg7xib9kbcxnqxkr509x4fz"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.12.0"; sha256="1zmrv53944s7a6cm96m2wgj6j9cfg5kjwgdfalkmii3vm400f6lr"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.6.0"; sha256="0wxf6p5r7h9zaxkzg1bf294d837klwscbd0gcxms26hgdj7pv2d1"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.14.0"; sha256="1k5npvxijzf3f7fxkmljajmjmfpkd36q8a2zpn24c4v19vglnmzx"; depends=[]; };
ProData = derive2 { name="ProData"; version="1.16.0"; sha256="0vgs9xnwrqfn8px4c4q0y3kxfwk5zldwpykdhkjn63ycamlfmq25"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.4.0"; sha256="1qilqzfmhb4fq2rkafy200s94gaj9ln6c0j8gw3q5ql6kzclkq2i"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.8.0"; sha256="13b72z76z5nqb2snga4rn0jrsd12c13x4b1q9i15j2lxnklcw11w"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.8.0"; sha256="17azrrn9fkiq1z4xxcg2afwh25iyvi93lq9p13zcpzg75fx5ccvc"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.6.0"; sha256="01i0n2sbi3l5gmkrvnc5r1c3fv57xli1fav7yal1x6vckqgma2ba"; depends=[]; };
RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.14.0"; sha256="0znhpk57bivhn94vd1czcrhcigi8wcascx9ycvbvfnbnibpwcsac"; depends=[RIPSeeker]; };
RITANdata = derive2 { name="RITANdata"; version="1.2.0"; sha256="0jl1grvgmrvvv5f4p0s6ypcpfbdlrc1s0pqqib7fw1qi1hmik5rj"; depends=[]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.16.0"; sha256="15i1yy7vhwbz3vjkcdgybqaiwr3x7w9fplscachb3xpw6d5g52n0"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.16.0"; sha256="0z3ijyvkajpa08d6i1lb1bfkfwhqkjizwn17hrinps3k9bzymni6"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.16.0"; sha256="06ja4rm3f310vj1sa473njsgaagmr3zz04pj3qp5cpq1pdcgsmfi"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="0.112.0"; sha256="1vjh1x652ll33sjahair95n1l98z847ks2907g84sbkwhvfzhkrm"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.6.0"; sha256="0grqjfiwi9i6whgiz73xz2havcwzjf3r23rg5wvxhk1bapxidxgv"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.6.0"; sha256="02mr0kn5hf2nqi2s7lk440c6a3n34a8apb1j7rpi8nxp4lp757if"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.6.0"; sha256="1mjxpdwziv0xy00hn0n7r0bvgh1gagrw77b5jnla3pz0nzhqwwhy"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.8.0"; sha256="03m4rzzwmjzj1ijg10ir1d5nmix04l0mi2jkddiqgq8ryl231dk2"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.6.0"; sha256="0v4z9hi9n8fxlk1gph7xapz2sgrakzm32xvl4qyjvqcfzmrvsjzy"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.6.0"; sha256="1dcqjfkjncxa32j2dp1dlhfl7cjlr5gpzsxvbals420sqn6pbh0b"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.6.0"; sha256="0iydym4bggbdwcnb916wqx9d8xxdm3aqbilknf31fvn7gyx76n5x"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.8.0"; sha256="1jyg1h1g6bkz0rvpsb0y2ksx2k8s1lm6i9jrkj5b9p9sv28fdiz9"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.8.0"; sha256="01s06w9aavgr19jf3kswxb2bg4v5r3j5md17j4qf698l82pjkigq"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.112.0"; sha256="1sf4fbrgcmq4jy3g4kh8xlbmvvs6ww9s8p0z8cba2ga0v440nzk4"; depends=[Biobase]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.15.0"; sha256="1jjc0hs6nmx56l5gl5rgqkrpv3shdwl4qjvn25ayv6dbvxajifw3"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.10.0"; sha256="0ixc2vhfm8y51p7iycr1mv98dacazj6f7bn5naffy607d9ryylb2"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.10.0"; sha256="14h4lqx8jymla7immhiisxkcch5pki26yk9ywgh2mwwkz5b3lmlr"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.10.0"; sha256="0adds1l1hp4cv98jzf4jp6rhwfyv63dnzcp7gzb91wq9wmmhh81w"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.10.0"; sha256="1a4389ds0kpq8q1brf7r7f368x7077qf1x53amixi4s15z3sqxzl"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.10.0"; sha256="1q7gqs3n9cv6fn95n79ir6p2jxccdx133az4f3ab198kxbdkn5bc"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.10.0"; sha256="0mimmfhssjr1h2fb8h0m7gjaw5z80vsnzjlckx9cmirn9112z3iz"; depends=[edgeR]; };
RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.16.0"; sha256="0p11ykzr0ypxsn3y0dwpggm826dszl3jzplvpzs60xgplj178m20"; depends=[easyRNASeq]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.10.0"; sha256="1ivxp3pi9dskh2q331dfpc9vz8g3x82sickmhk86mnhr8zwbkx6w"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.24.0"; sha256="1384y6jj8w380qppd9n80s41vz2g7lrlmckjszga0csc1qxx8dd7"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.14.0"; sha256="08myr18h36rczaqvrg2ckhrkivayspcr8p6p4400ynmafk8ihkkz"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.8.0"; sha256="1v4cp21h05yi6n26by8nnwajk0kl7qjlh4n9c9r81g7m35qyz7ny"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.10.0"; sha256="1hf6lz6k6xvlda7pbp4k3y15a9bid5k3r1fv64slj2d7ahpcqzph"; depends=[]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.6.0"; sha256="01rm6rhi7izycsbf4qmpn8bnkklh6r7c19dnb3p4mrw14ykcxsf0"; depends=[]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.16.0"; sha256="118cdjbaydibr8vi7jgf3jys0izph8d7986gwnq9fawbswdbhpp8"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.14.0"; sha256="0nzvc808lr3yp1gs60ifyq6ig52fqp1wy1pxazjcdsrxajpm8hl4"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.20.0"; sha256="1i38m224mdak52cd469nnm7q7f7llmwym9h03ldcs2i9azxp5dix"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.18.0"; sha256="0byb8gh2s7wlfdcnq9fkr92w7lxwrz48nlzprxd5b4kj91j1fdq0"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.14.0"; sha256="1vdk2z4jljwy4kpiy0bkf5ymx0hrc16ardh5rg1xvkra58z79p2j"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.14.0"; sha256="0nw9q0gkna2qja720hf766ppilxpi8m2plz68laxhzbc8bgq4g8v"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.2.1"; sha256="1ipl2lxwcp5ybzxw5hpa00c2syb5l8nnmdbdwchnbwj6j8gm97ly"; depends=[SummarizedExperiment]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.112.0"; sha256="1jpqpnyv3sc6pwh88gfpgc0dyypyi5fy1fim7ybggkc4zv2q69cf"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.112.0"; sha256="19965mwk4020xhs206n3gf8v85flf5qf2lnv6hsjfdsmi9clma4j"; depends=[Biobase]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.14.0"; sha256="1y39vdd7h90yw3rz68cbdv55hkw6a7d73ld0l8ihpy3l6ppqa2vz"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.16.0"; sha256="1zhwnpd2n5wydv7xi9ny8zx1riff3caj3lxr40g1fr1ps35vjdww"; depends=[TargetSearch]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.8.0"; sha256="0cryfc9qm6mnp0hnznqna372qi00cgjvc1793hrmnx9qkcyiszdf"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.2.0"; sha256="0gp2ij4jbwmqhi76a2cnn7wrg227vzvdkwczcsdhawxdjkys8q7h"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.10.0"; sha256="0d3zixbpchvgzrrslsqgp784w3wswqlp50462ry8b871qaqvh16j"; depends=[]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.16.0"; sha256="0z9rfxr3w0rgd6hqp36i24590scng6hcs9k82am7hvnp54jd3zif"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
affycompData = derive2 { name="affycompData"; version="1.16.0"; sha256="1l9mp2l41y1gbpv3yszq8bk5lrnbar8ga03ga14fsj1a4a3hzng9"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.26.0"; sha256="0ridqhk63d49wnsydf0iy5krnymgrjn3nxq7rnlzb85ryvcawqrx"; depends=[affy]; };
airway = derive2 { name="airway"; version="0.112.0"; sha256="0b155g62xy39vr58ni6snskyssll8fv0zvn9jln41xacil7f5pmq"; depends=[SummarizedExperiment]; };
alpineData = derive2 { name="alpineData"; version="1.4.0"; sha256="02fjs7liwh8m0n5hc0x51c7s718x3pv5a15qrf195bxsrx6qva47"; depends=[AnnotationHub ExperimentHub]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.14.0"; sha256="1255z9f75hbkzf6sbanck9rfm65z3vzg6kdjyyablh8wxbimjy2j"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.4.0"; sha256="1ahdk71ys4zf426swkyzmkaraz3lsjvn5dp4sdhxkxi5fmsx70mg"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.14.0"; sha256="1jw4lfh9p9m9q636jxq69lvjj859b6977k3jrdpjbr0nvr6phwkw"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.16.0"; sha256="0nbfxln9g8kl18ddzjsmcda1myymyk01ljm9x78cbjcnz6f4w3f5"; depends=[beadarray Biobase]; };
beta7 = derive2 { name="beta7"; version="1.16.0"; sha256="0isvwy72d1764fq92h4315dxirvlp2crsgif9amcq13nv4rn40q6"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.2.0"; sha256="09vcahw61zz1pbydfl42c28da3y7002956vdb7nbssj6qnp62pqs"; depends=[]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.16.0"; sha256="0rmvlvhih00vvcjss8z31cfq5mqv7s7f2ysra7n9jrkb1hinzpmz"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="0.112.0"; sha256="1qqyv21bn5nf876f9l6xjmpx0jz1vrkk5swpp8wjkgsymcvni9fl"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.16.0"; sha256="0k5aqaiqzhxksfiwk2kzzwi7y0c07q8hm7fybn8i1zixvjd8iwfy"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.16.0"; sha256="1iw7apcpvivrqsircvxch1kh1xwqwf797d7psyz8iyckkd9kjwy0"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.16.0"; sha256="15l3x34xj07ja5xvwy9fsbsyccyfgqpxmghbcjvjl2j3lwfhfdb6"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.16.0"; sha256="098rjmq04ycfaj1yw116vgbll5656j5qk3xackidn4y0qkgqg9xy"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.16.0"; sha256="126w884byzkbafn1d1qjp7m27d6mck7d6l23daw41vlrcssxz236"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.16.0"; sha256="0pvn08jhfmnl530la1ldsks9681xci5ivrdawcq7ggh7bxld56q2"; depends=[]; };
brgedata = derive2 { name="brgedata"; version="1.1.6"; sha256="0l2g7iwgm1jipz0vsik9dxsqslj7cv49y4mrxs4g9xsr2l9prm8i"; depends=[Biobase SummarizedExperiment]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.16.0"; sha256="0v0k80zhjkilnj7f567zq6b994csyhqmmd1xbs3006jmnkbnf2ms"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.16.0"; sha256="11drh9nwk7af04nqgm4gn7lpsfxprg9z158l032jiclfv0dhkqgl"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.14.0"; sha256="002l5isc234cg6hs35rvl2iyql6azjvr7dc3rsp0z9nzh9gmzjrz"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.16.0"; sha256="15w2zy6cz4ivyw2j973x6alianqci1rqk2x3jzsjaadsij5bn6yd"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.16.0"; sha256="1k6f47hf18fwlmjk9k2rkym328q7kwam0yq7mlcavj3w59avydan"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.4.0"; sha256="0srpibvjf89b8n8gf01njwg8gbi7a174y3fdcmxilfrfjqc9n2ib"; depends=[]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.16.0"; sha256="0dfbm2zyp140n57b9jn05li0bb3dz5cyilmdap2c28fjbyxrqdva"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.20.0"; sha256="1bl7b9ys59p9mk54vvsxravmq4xy9fxw3xadkbfdapyj79356r4p"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.16.0"; sha256="0f8lcws55zixrpwi9m1cqcz0g9k2bvx67h09sxhswswaalqq83xv"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.16.0"; sha256="1rq6dm0c1d395p7qixrnl7m3a7kzgih5bibxg65rngcs3fpjw3zh"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
charmData = derive2 { name="charmData"; version="1.14.0"; sha256="1y3lrmc8pqdnn1kqzy7r1flqlhj8yjj74hlrj3m49bi9isbv1yip"; depends=[charm pd_charm_hg18_example]; };
cheung2010 = derive2 { name="cheung2010"; version="0.16.1"; sha256="0xhv2zrzlhy4k828kq9rjw3slx1z30g0gwrnz2b9fgrnbd4f8fjd"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.2.0"; sha256="0iw4c60fpsixn6r5102s3422dlh1vxy4bdfnf8mf8l3893fgj0zc"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.4.0"; sha256="10ldrshic91rrjvrc7gi1lhqdnw9g3j00pz6vwhp6qnksr6lxdpi"; depends=[]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.14.0"; sha256="0j9jgjcsjr5vc0k0h7bjlvrln57zbl7pibdk7sxb1p56p49pngq4"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.20.0"; sha256="1b8kfpr2m5r286ah01jha8js4bvqxw0kk64k1gll96ydi1j6nx7d"; depends=[Biobase]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.14.0"; sha256="1xwg0m4iijvilhzc7sxspj06pm1ysldasv89yi2vskpilm5y1gci"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.6.0"; sha256="1x3wqxhafhbns7bngbbqzmjxw3rrb0a4xa2z7pdnlhxxij10mycd"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.10.0"; sha256="1h0wys79wr3csq93yvz6rzy964ydjyzfciwjp8099mxrbxsw538s"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.8.1"; sha256="1ip9v0v6lr7xg1j3zww99n0d5ar8l4d3c74mfhl9jg9c27vqcq95"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.16.0"; sha256="15d3g7snphvqh8cgry52lqz7v2l6icxznwcplvp73chkr8skqi38"; depends=[affy BiocGenerics]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.0.3"; sha256="19mm3psjmd6rzr34hcz1h5di8smqppnh73jqnqk6mnhgfy1i39ga"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; };
davidTiling = derive2 { name="davidTiling"; version="1.18.0"; sha256="1n7axspfh4ph911pj4x2r2dz1xmf6yk9hlnynx7pfmqlgzzcqcvy"; depends=[Biobase GO_db tilingArray]; };
derfinderData = derive2 { name="derfinderData"; version="0.112.0"; sha256="0nv2n5417yp8bwdrswbpvni3fg58wl40425f58rdljm4rndk51if"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.6.0"; sha256="1ww6raiwr7ymjr4psrgf7q3f59vx32fcc0id9d414z5n8lr4krlr"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.10.0"; sha256="1w275zk4q5hfmjagdpmfa6xls82zkk34wz795lfnccg1bhvhvpj2"; depends=[Biobase viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.16.0"; sha256="0x5h4d0hpx1cdlbs2pmylvkhjl46j2vbw8m6za48iv5ksjaxh099"; depends=[Biobase]; };
dsQTL = derive2 { name="dsQTL"; version="0.16.0"; sha256="02ha43xn2z085cyjq57d0n7919lj15bpy40kd0j9zwijyfrldz3s"; depends=[Biobase GGBase SummarizedExperiment]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.18.0"; sha256="07ggqj5bz8bna913ryb8wrb9jyr931nlpr5fggil35ms39xqf84f"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.18.0"; sha256="0pk6livrn8wan6w44kxvhx2s5yjqf5x9gv5pj0mcldirr5fwkyh6"; depends=[affy ecolicdf]; };
estrogen = derive2 { name="estrogen"; version="1.24.0"; sha256="0rjf95skgpznzwynfzc4mm5rs518x3ilqavz4250yp6g2yk81gdn"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.6.0"; sha256="0ms9f8925icf7ylrjz4akf147hii44qq9x3ddj0sy971a6ra8m1v"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.18.0"; sha256="0a43w7v0sn8z5qyjw0bdkn1jiwzsbxjhpjn9xr5lq1gba4wc15rh"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.16.0"; sha256="0hrn14nwz7xvrd7v0s4b29s22kczj24jklc2yyvij5icjlnr436j"; depends=[Biobase]; };
facopy_annot = derive2 { name="facopy.annot"; version="0.112.0"; sha256="0zd7li5yf6bl9vhpaj0sx8ilv7pqyaavscdrr1lw8y980qiggicm"; depends=[]; };
facsDorit = derive2 { name="facsDorit"; version="1.20.0"; sha256="1ppmfkrsdcmd47vakd4kxr5y78387wjpyanlhv9pp741x1jiyf5m"; depends=[prada]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.16.0"; sha256="0jla2cblvkahm1qkszx14dmhsjbk5ywz7sbg14s4x5xf0rv537gk"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.20.0"; sha256="1k32m49bhk30rbjryg77jhicjzga970p12wcy5bwzm0qxyj6wvqj"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="0.112.0"; sha256="0wgfb85pbs2q4wy59dqpnvvgw63kc9xr0smbjkp482nqv437vg15"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.14.0"; sha256="02cziq2jskrz17s05myqj8w1dfd49crnsga9l19xi67n2gl0dl5k"; depends=[flowCore]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.4.0"; sha256="09gcy0qv1crz8vfk4s58x054sbhnnfv9mvh1k5vcmlckppimywwq"; depends=[]; };
flowQBData = derive2 { name="flowQBData"; version="1.4.0"; sha256="1gvbykmmgl94vmd0g1fccdlshjycll5jvv8vg3h94kx7r3vq8ymi"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.14.0"; sha256="10q3nhcbmq75vk1z5zlqsp03d734qmkicsrc25nas2gnbzqmbhwx"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.14.0"; sha256="11h9hwif6hcc3jaipgf5dvjj3j2rcp61phhvxz45r563m494s83z"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.6.0"; sha256="0ds6x0a5qpp3c8776wbq1zbz17i5ymwxphf9zkxgsnrmjw3cpvvf"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.16.0"; sha256="18w5wdaq1j2mndyjfiflawf411zwh1hhjwcxaxrwqnl48p25vg5c"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.16.0"; sha256="1c9pq8b2mllpsvwyb7w0gwh66kkabrdfadsqd6hagszbyy9sw2v8"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.18.0"; sha256="1zlxzy9wzzqfm9brd70kdvki5d9r6lsqc22y0m469ybcxypzvan4"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.16.0"; sha256="0p0yxm9i4ynhcvshxywxf6d9lhcr32xp7677ywc6q0ikvr6733zp"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.14.0"; sha256="063ivzxw02j854ivv5yxdw7a637svadf9n2zwvc3783y4clkfqb6"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.10.0"; sha256="0h7g5x3kyb50qlblz5hc85lfm6n6f5nb68i146way3ggs04sqvla"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.10.0"; sha256="0lin7wz9xp7rx34wykpmsd5w7hf0jzzfbmnb4klrvlys1c5r9xr2"; depends=[SummarizedExperiment]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.8.0"; sha256="1fhq0r3hnv6k4mfrdhjsaylfi96vwv7j74dkaad92li4pizcz04q"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.20.0"; sha256="0zsylgc1ml9ddnd5r4magmhn7k3glz50aw9aqvf251zjycasncz5"; depends=[Biobase]; };
grndata = derive2 { name="grndata"; version="1.10.0"; sha256="0gqxvngjbxjd40z855vcrc4lqhx9q3b4bgicc371dkglsls4rpgs"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.10.0"; sha256="0j36kbyxrrp5h2m7747kprdvhidpcmm14lmqkd1c97ykx5wnzhpr"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="1.112.0"; sha256="169sg12li7nzd2zv6rj28qc6xfh1l7l9ipybrqa8xyqlcjhpq85f"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.20.0"; sha256="02pyrd8i1agx31ww4sw6xcwmncibvhqbys072w80rlx3vbjymn3c"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.20.0"; sha256="0vp1wkbz4l9cxld9iazdi59mkrpvinjz6abf34rl7qzbqnckgygf"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.20.0"; sha256="1ddxp4adf5nlr96n89hqjv9f0jvm0zknmwpibp757ic6zrk262da"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.20.0"; sha256="07cmawlx9wdbyzjjj5wh2h1a32d3ascr9h8rpyg6z1pdriq8cahq"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.20.0"; sha256="19wpwai8h0ix4cv17rgz4pz74b0qwby4jc5ry539fb8ls9rzvx1q"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.20.0"; sha256="0qjfmjww0rdma3q2nh6ax64zl7adx4n9j0xhc9s19rz5drsdnifl"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.16.0"; sha256="1hzlxha4nlvqw8ml6pylcmb7y986718yg7ff8hn344yfcigpsqkb"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.16.0"; sha256="00mjbla9cwj656s174xbfcdmi8gr1xs7vksazrx25m9yn3dw23jb"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.16.0"; sha256="1ffamwyl5fax5n6x4nc01gx4kazs73jsm239w943jkx2bwy5j2zf"; depends=[]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.16.0"; sha256="1blm93a5ll7pn1yhbrl8y6wb1yvfvfnc1zq96kr6id9wxi7bl9hl"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.18.0"; sha256="15g6lmq6zfg2vkqliadqrmwivw2mldxlrf52myspmfl83scq973a"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.14.0"; sha256="0g642694w0qsf27chdlw1g6924pm20kbgza4w57szcdnschabh52"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.18.0"; sha256="1nff23qa684xzy35d78sympkns7qa82c8cg21bgff3yhlw2ww2ws"; depends=[Biobase hgu133plus2_db]; };
iontreeData = derive2 { name="iontreeData"; version="1.14.0"; sha256="1xj8psicl3yp17i7r6cg9v7rf1wvpz2kck7pbnhwppm7cshqang1"; depends=[]; };
kidpack = derive2 { name="kidpack"; version="1.20.0"; sha256="007jlvpcwin2q09v4z79mnplz2176crgngana4mfpmx4sp4sh1lx"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.14.0"; sha256="1dvrfn3zwi5zl8fjp6kyqankqpzi2dhgzyj1dlp1bijy2y09lg7p"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.14.0"; sha256="1pya637a8yww5cm108w5l1ij2js9mx9mpq7d1miwqdqv2mi0liz6"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.18.0"; sha256="1jxk7abi7lkv8627vn9ydnmx6i4ycgicnl91j6r5gi0q3kffmmkq"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.16.0"; sha256="09v9r6rmfcqprqd1rx53sa4dhjjmg6d9649vlhfhzkyc73yknwmb"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.4.0"; sha256="0dflfp14gdjgy7qf3my0vas5zbg77l16li7xgv1924cry11w2dxx"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.10.0"; sha256="1bfx4imb5yg17n0g1ag436zlks4jcp8ga0xj9wyh9bhx4miwyay4"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.14.0"; sha256="0ks72wnagdvnbilqcsvl5lbhgh64fhbfys0da03336f1z16f5lv9"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.22.0"; sha256="0hn20i11vl9x23mx283aki097r1a8rspagac821kmlwghyab1mxq"; depends=[]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.14.0"; sha256="1iygqxymvb98cm325bmdqb34n9b4k1vdzdyzcq8a0gh1dvs2m0iw"; depends=[]; };
methyvimData = derive2 { name="methyvimData"; version="1.0.0"; sha256="1b2mvcawafkr15py8h9j10w5givifi99h9clbdmkgfyixbbh0m94"; depends=[minfi]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.16.0"; sha256="1ym4wg3g29z7yqmxfxq95yxwc5n048fw3m4bp7dwcq1agnjn5qa7"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.8.0"; sha256="0h4a3vwzbpzs7rnkn3qgpmfp08a8x8vyy78zb2zl0pgnni7yrdks"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.0.0"; sha256="13fwzf91hdy4vvxg47xkl78qk4jfgn9whj41gl3pqbgxkp7b3d2n"; depends=[SummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.24.0"; sha256="0j5f69k9s0mppb62cffj3kscvvmrrwhf6x3xsw3bc6qdk0f3sv67"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.4.0"; sha256="12vxglizdyxk4hmj684cwfax4k1rwrz9lmm7khbqzhckzrgiqbny"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.8.0"; sha256="1dyr99wi3syzrr6vdxfcp7fjnx9p4gd6raj2r7x83r11g2rndpyn"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.14.0"; sha256="0vgmalrsnm616la3251p1fvcjpfg0wpv5zaxg20ikdc982zfk4sa"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.16.0"; sha256="0m2az0wv2lmdwa8c465cnfwmnmxmjz33ras984xbcvkh5a8i3gmw"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.16.0"; sha256="119z7vxd4yrfgjsd286iswklg0n07gzyckib3ivmm285hxphl79d"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.6.0"; sha256="1fpxy34gyngsz7rpr2ng77xb1bylj8s5i500mpbi765cva47lk11"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="0.112.0"; sha256="0ii7c6ynif55izkysw12vjphpkxyx3lvw0akfl18ypbiash3qf6h"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.18.0"; sha256="16wygr7g7vr3jsw9l6fzajid1cxffdww9pik5m4x55chdliq4f25"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.6.0"; sha256="0csm35vzk9dp3gc8yfzli1rwanrah42yxsqssjfbvw5zcijs9npm"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.8.0"; sha256="1miqc8apjm8pvb9p4man688qnxpg04fqgidy7g9vr654hfc90gja"; depends=[]; };
mvoutData = derive2 { name="mvoutData"; version="1.14.0"; sha256="0lwzsv8pmyyadnky9m0c3xf5dvm2qs8igkvrfaglsgl1wmymw86a"; depends=[affy Biobase lumi]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.16.0"; sha256="1pmz9vyvl3r8s6mfbd7k7vrz7qk1sv9136aykykvl139rsq7vwnz"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.16.0"; sha256="1jd3fwri705b4i1wwnzx41idc2lvwai6mr7k78666wl6a8275hcn"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.6.0"; sha256="0h6ll2csja5vnmylazb1qklz7ybk5hn0nxgkvxhhsmyqk9w7gk6m"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.16.0"; sha256="1rchf41zh44kzvim8iwvyfvgcfwv587p5p1yipgwf65hyc9sd0fv"; depends=[]; };
pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.4.0"; sha256="143an0hs22dbglmdc408mfch53zcskbf3a4jfgiajz3dml81flzl"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.14.0"; sha256="137lj4j0hlz3mkwyf334xr3bpm9j2jg1cd2sw9203kx6hvk92i2z"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.14.0"; sha256="0kb62bm1a8m88g59v6553qg69rmv0gh0wy4yfkqvn2sgz51zk4r4"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.14.0"; sha256="0b3cak7nzd6qxr7gnly4246gjdhxyp8h0w5dr1xsgwd9zy1k0psw"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="1.0.0"; sha256="0bkzqac0b2x1f398bflv077dp6nb3ysdf75jcwxpj4nwyhcb7n4f"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.16.0"; sha256="1ilwm4nx232dll01xqqvagq3qi6qa060v84y20ihxhfwdm46z0ci"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="0.112.0"; sha256="15v4yk9cpnz2k16ka4iyc61ji5ck9mlkabgzxalwfnz77ri23mk0"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.6.0"; sha256="0p3pbjm5ww24ax7h72m38l0rcm01w5a4h8j5rsgynczvfv9jlwjq"; depends=[proFIA]; };
ppiData = derive2 { name="ppiData"; version="0.16.0"; sha256="00wjgaihavx99qbcrx1sai2v35pm7kmkvybwdn7ndngvkzqixph5"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.14.0"; sha256="0rq90wrprj8xy60597dwq8ialjfyfcs8c2fgbskcm7ypba92brmp"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.6.0"; sha256="0f08mbwsac1nxvf4mwyjnwxd662rdibnzgrn8a0hcl1jmlsrkmg0"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.6.0"; sha256="0rk822avnfg3lydq9z995ki9zh7ch8ycg6nslxp8w5c3z4p447mk"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.6.0"; sha256="03min0za1paivvi45fl6nyksvhahpxlnqnkisj9312pb1x1gfm54"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.6.0"; sha256="01c519rp5jdphc9kqsdqcxsxkg00nhv3s82xlms6s0qdpibscx8m"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.6.0"; sha256="10qqsijkjwsw64am50vcjykxghgw51psq608yp9qj85l5d33kkmp"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.14.0"; sha256="0fsg1qcvfm2s7mpmwqih4pkgwphb4d1k8fah6gwvgc13q519ir2x"; depends=[affy Biobase oligo puma]; };
rRDPData = derive2 { name="rRDPData"; version="0.112.0"; sha256="0305x1kkm5wbxcnw7kazrlhdjp91xrbxcvyypn6n0ga09ypk071l"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.0.0"; sha256="03j715sdprmdn1kazcyfy33nymz8kj52hxbv85a8bj3r2r1w6fzm"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.0.0"; sha256="1v7fvyabb8zjhzwpi1yamp0ch8zm32s820bfr366ir69dib66sa4"; depends=[ExperimentHub SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.16.0"; sha256="06mfgsvzn2s30skrrqm4m76kb1bzp6aa52jfkz94gfam8ps1h1vf"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.2.0"; sha256="0bb4pjiljjixxvz9p59knwxmwr7g0334rs58r0j9w84v1g5prgwv"; depends=[SummarizedExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="1.4.0"; sha256="0jlcgna92mrcjz95r788falyhdpbfa75z2j7dy4jxdr0kd0gjrb6"; depends=[SummarizedExperiment]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.10.0"; sha256="01h6xhap2gbwgv3jwrzzciwd697x1vy6gaxmn0jlhvryy9qw9q05"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.14.0"; sha256="1g1lgzsrnf0j5yv2hlgilij1mzbz86pl3p3vd8pbkd61pdf4gxz2"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.12.0"; sha256="0dzfxx75lnrqh2ag9x7351c8xkkfrbvz8fqnigfslgrx01ydxs9y"; depends=[]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.14.0"; sha256="10pg5vp1np7n0n7maiizgx2kskm02ikfqvz6pxlz9mglhi1vss1l"; depends=[]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.14.0"; sha256="0643h4wlqmpsygawlh9mh1f889wp79adhlx9s1cqm2b5gggpsrli"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="0.112.0"; sha256="03y637yxglvy3jxydslwl9ivdc5r8ndph7anbzrmprzp6i481gj4"; depends=[]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.14.0"; sha256="1sdmcbx3yvgwhw8kilx3xa6ip0klyvia00plv1pyfwsl6ldnymvl"; depends=[]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.14.0"; sha256="0l6nfx1b97grxgq618zvb9ymysrl52r1ahr5ivav3znsnych0gl8"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.18.0"; sha256="1bxc1qzs6jcdfh87f6mzn9d1ih790i461267czzhsm9niha4q604"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.16.0"; sha256="1r1ldji1wnfsk772c00cwmx13xms90v9diqrqjilxbam9p30wr98"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.6.0"; sha256="1j2kwczhqz26rf0ra34am32lbwp7rk13in1saf0kxd88m8qljksa"; depends=[BiocGenerics]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.16.0"; sha256="0a71k64y6yw4pxnbay478d27pfshnw96rslphvpkqaf48903b2fy"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.16.0"; sha256="088hrs6b65rxvw4d153fbk83w9p88mv5xfkwj4xziygibqy7lmpi"; depends=[AnnotationDbi]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.6.0"; sha256="030x882c38apa3n4vs9qj5a83sa8m183ifym60zqyms432k4xc70"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.0.0"; sha256="157vv89cidpcnliksfy4inds52j176724xydk0smykc6ny9wmas7"; depends=[topdownr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.16.0"; sha256="17v27ir0a38y1h73nr8nib18bj8s2l6rbz5y15ly7pp2wkp5w0cm"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.6.0"; sha256="0l86z9nryhqzdqh6vn5krlkdhanhybr86z75l7lwg07k34nm8qcb"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.0.0"; sha256="0nka5sw9gp7nv09zdi4cq10k7k400padadq80xzxfzss91nwz23l"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.14.0"; sha256="0ndskrk78c8596gymcffdr5mbxi1x5046w8m83baa3vrd8csn282"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.18.0"; sha256="1qm0knin24bwpjsi4g9s6vdfydrjqvv19a2kjx1k51l2j46g0rni"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.24.0"; sha256="19v901c67kp8kfb6i2hv8mczf9kcy0pvr8y4w5brjp4lj6djcvid"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.16.0"; sha256="19c4293lzrw8d8az1bzfw5ipxyrzgh8kxi3km82nqzfcnxlq0b89"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.14.0"; sha256="0f7amg423236scpzxqi2jy2w4ppa0zqwn9m4mqjksk2klig9nx3g"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.16.0"; sha256="05pi5s91wivlc1nfnsnzgx8kdibi7a3k5dgqh0a0x98wiqynin41"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.20.0"; sha256="0hl53rl5yhmd3yxdjd2q0wj8mlcgdckiln0dym83b1249lnhwp9z"; depends=[Biobase GGBase]; };
yriMulti = derive2 { name="yriMulti"; version="0.8.0"; sha256="0b48phy3jndplmi9yxbd0i5bn7jqf6fpb7qlqxvzibm1q50l9yx3"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.112.0"; sha256="1zpn3d4xmzq18hji93g5br1snw0d9wmvpjmbxnmiaqwr8mrx5zbn"; depends=[]; };
}

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File diff suppressed because it is too large Load diff

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@ -42,16 +42,17 @@ let
# from the name, version, sha256, and optional per-package arguments above
#
deriveBioc = mkDerive {
mkHomepage = {name, rVersion}: "https://bioconductor.org/packages/${rVersion}/bioc/html/${name}.html";
mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/bioc/src/contrib/${name}_${version}.tar.gz" ];
mkHomepage = {name, biocVersion}: "https://bioconductor.org/packages/${biocVersion}/bioc/html/${name}.html";
mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/bioc/src/contrib/${name}_${version}.tar.gz"
"mirror://bioc/${biocVersion}/bioc/src/contrib/Archive/${name}_${version}.tar.gz" ];
};
deriveBiocAnn = mkDerive {
mkHomepage = {name, rVersion}: "http://www.bioconductor.org/packages/${name}.html";
mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/data/annotation/src/contrib/${name}_${version}.tar.gz" ];
mkHomepage = {name, biocVersion}: "http://www.bioconductor.org/packages/${name}.html";
mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/annotation/src/contrib/${name}_${version}.tar.gz" ];
};
deriveBiocExp = mkDerive {
mkHomepage = {name, rVersion}: "http://www.bioconductor.org/packages/${name}.html";
mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/data/experiment/src/contrib/${name}_${version}.tar.gz" ];
mkHomepage = {name, biocVersion}: "http://www.bioconductor.org/packages/${name}.html";
mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/experiment/src/contrib/${name}_${version}.tar.gz" ];
};
deriveCran = mkDerive {
mkHomepage = {name, snapshot}: "http://mran.revolutionanalytics.com/snapshot/${snapshot}/web/packages/${name}/";
@ -230,6 +231,7 @@ let
packagesWithNativeBuildInputs = {
abn = [ pkgs.gsl_1 ];
adimpro = [ pkgs.imagemagick ];
animation = [ pkgs.which ];
audio = [ pkgs.portaudio ];
BayesSAE = [ pkgs.gsl_1 ];
BayesVarSel = [ pkgs.gsl_1 ];
@ -313,7 +315,7 @@ let
RGtk2 = [ pkgs.gtk2.dev ];
rhdf5 = [ pkgs.zlib ];
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ];
Rhtslib = [ pkgs.zlib.dev ];
Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf ];
RJaCGH = [ pkgs.zlib.dev ];
rjags = [ pkgs.jags ];
rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ];
@ -350,7 +352,6 @@ let
simplexreg = [ pkgs.gsl_1 ];
SOD = [ pkgs.opencl-headers ];
spate = [ pkgs.fftw.dev ];
sprint = [ pkgs.openmpi ];
ssanv = [ pkgs.proj ];
stsm = [ pkgs.gsl_1 ];
stringi = [ pkgs.icu.dev ];
@ -384,7 +385,6 @@ let
affyio = [ pkgs.zlib.dev ];
VariantAnnotation = [ pkgs.zlib.dev ];
snpStats = [ pkgs.zlib.dev ];
gputools = [ pkgs.pcre.dev pkgs.lzma.dev pkgs.zlib.dev pkgs.bzip2.dev pkgs.icu.dev ];
};
packagesWithBuildInputs = {
@ -398,7 +398,6 @@ let
RPushbullet = [ pkgs.which ];
qtpaint = [ pkgs.cmake ];
qtbase = [ pkgs.cmake pkgs.perl ];
gmatrix = [ pkgs.cudatoolkit pkgs.which ];
RCurl = [ pkgs.curl.dev ];
R2SWF = [ pkgs.pkgconfig ];
rggobi = [ pkgs.pkgconfig ];
@ -427,12 +426,10 @@ let
tesseract = [ pkgs.pkgconfig ];
Cairo = [ pkgs.pkgconfig ];
Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ];
qtutils = [ pkgs.qt4 ];
tcltk2 = [ pkgs.tcl pkgs.tk ];
tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ];
rPython = [ pkgs.which ];
gridGraphics = [ pkgs.which ];
gputools = [ pkgs.which pkgs.cudatoolkit ];
adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ];
PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
@ -498,7 +495,6 @@ let
"EnQuireR"
"eVenn"
"exactLoglinTest"
"FAiR"
"fat2Lpoly"
"fbati"
"FD"
@ -519,7 +515,6 @@ let
"geoR"
"geoRglm"
"georob"
"GeoXp"
"GGEBiplotGUI"
"gnm"
"GPCSIV"
@ -535,7 +530,6 @@ let
"HH"
"HiveR"
"HomoPolymer"
"iBUGS"
"ic50"
"iDynoR"
"in2extRemes"
@ -591,10 +585,8 @@ let
"prefmod"
"PrevMap"
"ProbForecastGOP"
"QCAGUI"
"qtbase"
"qtpaint"
"qtutils"
"R2STATS"
"r4ss"
"RandomFields"
@ -700,16 +692,11 @@ let
packagesToSkipCheck = [
"Rmpi" # tries to run MPI processes
"gmatrix" # requires CUDA runtime
"gputools" # requires CUDA runtime
"sprint" # tries to run MPI processes
"pbdMPI" # tries to run MPI processes
];
# Packages which cannot be installed due to lack of dependencies or other reasons.
brokenPackages = [
"gputools" # depends on non-free cudatoolkit-8.0.61
"gmatrix" # depends on non-free cudatoolkit-8.0.61
];
otherOverrides = old: new: {
@ -840,15 +827,6 @@ let
patches = [ ./patches/spMC.patch ];
});
BayesLogit = old.BayesLogit.overrideDerivation (attrs: {
patches = [ ./patches/BayesLogit.patch ];
buildInputs = (attrs.buildInputs or []) ++ [ pkgs.openblasCompat ];
});
BayesBridge = old.BayesBridge.overrideDerivation (attrs: {
patches = [ ./patches/BayesBridge.patch ];
});
openssl = old.openssl.overrideDerivation (attrs: {
PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include";
PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -lssl -lcrypto";

View file

@ -3,12 +3,12 @@ library(data.table)
library(parallel)
cl <- makeCluster(10)
rVersion <- paste(R.Version()$major, strsplit(R.Version()$minor, ".", fixed=TRUE)[[1]][1], sep=".")
biocVersion <- 3.6
snapshotDate <- Sys.Date()-1
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/experiment/src/contrib/")
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/experiment/src/contrib/")
, cran=paste0("http://mran.revolutionanalytics.com/snapshot/", snapshotDate, "/src/contrib/")
)
@ -81,7 +81,7 @@ cat("{ self, derive }:\n")
cat("let derive2 = derive ")
if (mirrorType == "cran") { cat("{ snapshot = \"", paste(snapshotDate), "\"; }", sep="")
} else if (mirrorType == "irkernel") { cat("{}")
} else { cat("{ rVersion = \"", rVersion, "\"; }", sep="") }
} else { cat("{ biocVersion = \"", biocVersion, "\"; }", sep="") }
cat(";\n")
cat("in with self; {\n")
cat(paste(nix, collapse="\n"), "\n", sep="")

View file

@ -1,9 +0,0 @@
diff -ru -x '*~' BayesBridge_orig/src/Makevars BayesBridge/src/Makevars
--- BayesBridge_orig/src/Makevars 2014-07-19 05:08:55.000000000 +0900
+++ BayesBridge/src/Makevars 2014-10-25 18:35:01.398539305 +0900
@@ -9,4 +9,4 @@
# PKG_CPPFLAGS = -DUSE_R -DDISABLE_FIO -I../inst/include/ -DDISABLE_SINGLE -DNTHROW
PKG_CPPFLAGS = -DUSE_R -DDISABLE_FIO -DDISABLE_SINGLE -DNTHROW
# PKG_CPPFLAGS = -DUSE_R -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wshadow -ansi -Wsequence-point
-PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS)
+PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)

View file

@ -1,12 +0,0 @@
diff -ru -x '*~' BayesLogit_orig/src/Makevars BayesLogit/src/Makevars
--- BayesLogit_orig/src/Makevars 2014-04-24 23:31:13.000000000 +0900
+++ BayesLogit/src/Makevars 2014-10-25 18:33:32.398572641 +0900
@@ -6,7 +6,7 @@
## W/OUT Dynamic Stuff
OBJECTS = Matrix.o MatrixFrame.o RRNG.o RNG.o FSF_nmix.o LogitWrapper.o \
PolyaGamma.o PolyaGammaAlt.o PolyaGammaSP.o InvertY.o
-PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS)
+PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
# PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wextra
PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW

View file

@ -29,8 +29,9 @@ pythonPackages.buildPythonApplication rec {
# setuptools do not get propagated into the tox call (cannot import setuptools)
rm testing/test_test.py
# test tries to connect to upstream pypi
py.test -k 'not test_pypi_index_attributes' testing
# test_pypi_index_attributes tries to connect to upstream pypi
# test_download_release_error is fixed in the next release
py.test -k 'not test_pypi_index_attributes and not test_download_release_error' testing
'';
LC_ALL = "en_US.UTF-8";

View file

@ -3,17 +3,24 @@
pythonPackages.buildPythonApplication rec {
name = "${pname}-${version}";
pname = "devpi-server";
version = "4.3.1";
version = "4.4.0";
src = pythonPackages.fetchPypi {
inherit pname version;
sha256 = "0x6ks2sbpknznxaqlh0gf5hcvhkmgixixq2zs91wgfqxk4vi4s6n";
sha256 = "0y77kcnk26pfid8vsw07v2k61x9sdl6wbmxg5qxnz3vd7703xpkl";
};
propagatedBuildInputs = with pythonPackages;
[ devpi-common execnet itsdangerous pluggy waitress pyramid passlib ];
checkInputs = with pythonPackages; [ nginx webtest pytest beautifulsoup4 pytest-timeout pytest-catchlog mock pyyaml ];
checkInputs = with pythonPackages; [ nginx webtest pytest beautifulsoup4 pytest-timeout mock pyyaml ];
preCheck = ''
# These tests pass with pytest 3.3.2 but not with pytest 3.4.0.
sed -i 's/test_basic/noop/' test_devpi_server/test_log.py
sed -i 's/test_new/noop/' test_devpi_server/test_log.py
sed -i 's/test_thread_run_try_again/noop/' test_devpi_server/test_replica.py
'';
checkPhase = ''
runHook preCheck
cd test_devpi_server/
PATH=$PATH:$out/bin pytest --slow -rfsxX
'';

View file

@ -0,0 +1,24 @@
{ stdenv, lib, fetchFromGitHub, autoreconfHook, ronn }:
stdenv.mkDerivation rec {
pname = "flock";
name = "${pname}-${version}";
version = "0.2.3";
src = fetchFromGitHub {
owner = "discoteq";
repo = pname;
rev = "v${version}";
sha256 = "1vdq22zhdfi7wwndsd6s7fwmz02fsn0x04d7asq4hslk7bjxjjzn";
};
nativeBuildInputs = [ autoreconfHook ];
buildInputs = [ ronn ];
meta = with lib; {
description = "Cross-platform version of flock(1)";
maintainers = [ maintainers.matthewbauer ];
platforms = platforms.all;
license = licenses.isc;
};
}

View file

@ -6,10 +6,10 @@ mkDerivation {
pname = "make-travis-yml";
version = "0";
src = fetchFromGitHub {
owner = "hvr";
repo = "multi-ghc-travis";
rev = "612a29439ba61b01efb98ea6d36b7ffd987dc5a0";
sha256 = "0q416rzzwipbnvslhwmm43w38dwma3lks12fghb0svcwj5lzgxsf";
owner = "haskell-CI";
repo = "haskell-ci";
rev = "36b2ee58b9fd160d606608832625b2b6c32aec43";
sha256 = "16g99jh5bszvfvb7mmyhl95mkf1l3ydyax8d9py91hi3m8r0c2x0";
};
isLibrary = true;
isExecutable = true;
@ -22,7 +22,7 @@ mkDerivation {
base bytestring Diff directory filepath tasty tasty-golden
transformers
];
homepage = "https://github.com/hvr/multi-ghc-travis";
homepage = "https://github.com/haskell-CI/haskell-ci";
description = "Script generator for Travis-CI";
license = stdenv.lib.licenses.bsd3;
}

View file

@ -13,6 +13,8 @@ stdenv.mkDerivation rec {
buildInputs = [ libunwind ]; # support -k
configureFlags = stdenv.lib.optional stdenv.hostPlatform.isAarch64 "--enable-mpers=check";
meta = with stdenv.lib; {
homepage = http://strace.sourceforge.net/;
description = "A system call tracer for Linux";

View file

@ -1,5 +1,5 @@
{ fetchgit, pkgconfig, gettext, runCommand, makeWrapper
, elfutils, kernel, gnumake, python2, pythonPackages
, elfutils, kernel, gnumake, python2, python2Packages
}:
let
@ -17,7 +17,7 @@ let
name = "systemtap-${version}";
src = fetchgit { inherit url rev sha256; };
nativeBuildInputs = [ pkgconfig ];
buildInputs = [ elfutils gettext python2 pythonPackages.setuptools ];
buildInputs = [ elfutils gettext python2 python2Packages.setuptools ];
# FIXME: Workaround for bug in kbuild, where quoted -I"/foo" flags would get mangled in out-of-tree kbuild dirs
postPatch = ''
substituteInPlace buildrun.cxx --replace \
@ -39,6 +39,8 @@ let
done
'';
pypkgs = with python2Packages; makePythonPath [ pyparsing ];
in runCommand "systemtap-${kernel.version}-${version}" {
inherit stapBuild kernelBuildDir;
buildInputs = [ makeWrapper ];
@ -54,8 +56,10 @@ in runCommand "systemtap-${kernel.version}-${version}" {
for bin in $stapBuild/bin/*; do # hello emacs */
ln -s $bin $out/bin
done
rm $out/bin/stap
rm $out/bin/stap $out/bin/dtrace
makeWrapper $stapBuild/bin/stap $out/bin/stap \
--add-flags "-r $kernelBuildDir" \
--prefix PATH : ${lib.makeBinPath [ stdenv.cc.cc stdenv.cc.bintools elfutils gnumake ]}
makeWrapper $stapBuild/bin/dtrace $out/bin/dtrace \
--prefix PYTHONPATH : ${pypkgs}
''

View file

@ -4,17 +4,17 @@ with rustPlatform;
buildRustPackage rec {
name = "racerd-${version}";
version = "2017-02-17";
version = "2017-09-15";
src = fetchFromGitHub {
owner = "jwilm";
repo = "racerd";
rev = "e3f3ff010fce2c67195750d9a6a669ffb3c2ac5f";
sha256 = "125pmbkjnjh83xwikcwfbb8g150nldz7wh0ly1gv9kl1b521dydk";
rev = "29cd4c6fd2a9301e49931c2e065b2e10c4b587e4";
sha256 = "0knz881mjhd8q2i8ydggaa7lfpiqy11wjmnv5p80n1d8zca6yb7z";
};
doCheck = false;
cargoSha256 = "1h7hm7vkk1grah6pn5ydfi5pzc2kd48lh2kxim5jlvrxhd2dingg";
cargoSha256 = "00gxj98zdkbrc5cxd4w5hk7iwv9a1kwa535hhspx9xd02r4d8rzl";
buildInputs = [ makeWrapper ];

View file

@ -4,15 +4,15 @@
rustPlatform.buildRustPackage rec {
name = "rustup-${version}";
version = "2017-10-29";
version = "1.11.0";
cargoSha256 = "1xwxv8y9xjgdmm92ldrn9m9fml2zb5h7qqm7dhw63j6psb3ajqrw";
cargoSha256 = "1r9mnj3x9sn16hi1r09gl5q0cnsa2g6kbjw2g115858i2a9k6hkr";
src = fetchFromGitHub {
owner = "rust-lang-nursery";
repo = "rustup.rs";
rev = "13c8092507bf646f3ef6a621fe2c5a68212e800f";
sha256 = "1qd01rjk9qpfzgqs35f5nxrcf00kmf76zwmgj3yzdig9zymjwndg";
rev = version;
sha256 = "05rbgkz4fk6c1x6bpmpx108bg2qcrf6vv3yfz378s7bmr3l319iz";
};
nativeBuildInputs = [ pkgconfig ];
@ -35,23 +35,23 @@ rustPlatform.buildRustPackage rec {
postInstall = ''
pushd $out/bin
mv rustup-init rustup
for link in cargo rustc rustdoc rust-gdb rust-lldb; do
for link in cargo rustc rustdoc rust-gdb rust-lldb rls rustfmt cargo-fmt; do
ln -s rustup $link
done
popd
# tries to create .rustup
export HOME=$(mktemp -d)
mkdir -p "$out/share/"{bash-completion/completions,fish/completions,zsh/site-functions}
mkdir -p "$out/share/"{bash-completion/completions,fish/vendor_completions.d,zsh/site-functions}
$out/bin/rustup completions bash > "$out/share/bash-completion/completions/rustup"
$out/bin/rustup completions fish > "$out/share/fish/completions/rustup.fish"
$out/bin/rustup completions fish > "$out/share/fish/vendor_completions.d/rustup.fish"
$out/bin/rustup completions zsh > "$out/share/zsh/site-functions/_rustup"
'';
meta = with stdenv.lib; {
description = "The Rust toolchain installer";
homepage = https://www.rustup.rs/;
license = licenses.mit;
license = with licenses; [ asl20 /* or */ mit ];
maintainers = [ maintainers.mic92 ];
};
}

View file

@ -5,7 +5,7 @@ let
in
buildNodejs {
inherit enableNpm;
version = "6.12.3";
sha256 = "1p6w7ngp95lc3ksyklp1mwyq1f02vz62r1h60g1ri00pl8pnfn0s";
version = "6.13.0";
sha256 = "012dpfqxsrmd3xc4dmq0mik1kab4czf56s8wm2jvm7xjqvi6y5mp";
patches = lib.optionals stdenv.isDarwin [ ./no-xcode.patch ];
}

View file

@ -5,7 +5,7 @@
stdenv.mkDerivation rec {
name = "openra-${version}";
version = "20171014";
version = "20180218";
meta = with stdenv.lib; {
description = "Real Time Strategy game engine recreating the C&C titles";
@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
owner = "OpenRA";
repo = "OpenRA";
rev = "release-${version}";
sha256 = "0nlwpmiwhjs3qc2lxwnrh4p874v5y6mf4avi6bqgr1wvzc43n8wr";
sha256 = "1853p2q88602s3zf22wg1h2qx2x661n20bcjjbfmj0h2d4p9dmaf";
extraPostFetch = ''
sed -i 's,curl,curl --insecure,g' $out/thirdparty/{fetch-thirdparty-deps,noget}.sh

View file

@ -0,0 +1,47 @@
{ stdenv, fetchurl, dpkg, makeWrapper, coreutils, gnugrep, gnused, perl, mfcl2720dwlpr }:
stdenv.mkDerivation rec {
name = "mfcl2720dwcupswrapper-${version}";
version = "3.2.0-1";
src = fetchurl {
url = "http://download.brother.com/welcome/dlf101802/${name}.i386.deb";
sha256 = "6d131926ce22c51b1854d2b91e426cc7ecbf5d6dabd698ef51a417090e35c598";
};
nativeBuildInputs = [ dpkg makeWrapper ];
phases = [ "installPhase" ];
installPhase = ''
dpkg-deb -x $src $out
basedir=${mfcl2720dwlpr}/opt/brother/Printers/MFCL2720DW
dir=$out/opt/brother/Printers/MFCL2720DW
substituteInPlace $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW \
--replace /usr/bin/perl ${perl}/bin/perl \
--replace "basedir =~" "basedir = \"$basedir\"; #" \
--replace "PRINTER =~" "PRINTER = \"MFCL2720DW\"; #"
substituteInPlace $dir/cupswrapper/paperconfigml1 \
--replace /usr/bin/perl ${perl}/bin/perl
wrapProgram $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW \
--prefix PATH : ${stdenv.lib.makeBinPath [ coreutils gnugrep gnused ]}
mkdir -p $out/lib/cups/filter
mkdir -p $out/share/cups/model
ln $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW $out/lib/cups/filter
ln $dir/cupswrapper/brother-MFCL2720DW-cups-en.ppd $out/share/cups/model
'';
meta = {
description = "Brother MFC-L2720DW CUPS wrapper driver";
homepage = http://www.brother.com/;
license = stdenv.lib.licenses.gpl2;
platforms = [ "x86_64-linux" "i686-linux" ];
maintainers = [ stdenv.lib.maintainers.xeji ];
};
}

View file

@ -0,0 +1,45 @@
{ pkgs, stdenv, fetchurl, dpkg, makeWrapper, coreutils, ghostscript, gnugrep, gnused, which, perl }:
stdenv.mkDerivation rec {
name = "mfcl2720dwlpr-${version}";
version = "3.2.0-1";
src = fetchurl {
url = "http://download.brother.com/welcome/dlf101801/${name}.i386.deb";
sha256 = "088217e9ad118ec1e7f3d3f8f60f3bd839fe2c7d7c1136b249e9ac648dc742af";
};
nativeBuildInputs = [ dpkg makeWrapper ];
phases = [ "installPhase" ];
installPhase = ''
dpkg-deb -x $src $out
dir=$out/opt/brother/Printers/MFCL2720DW
substituteInPlace $dir/lpd/filter_MFCL2720DW \
--replace /usr/bin/perl ${perl}/bin/perl \
--replace "BR_PRT_PATH =~" "BR_PRT_PATH = \"$dir\"; #" \
--replace "PRINTER =~" "PRINTER = \"MFCL2720DW\"; #"
wrapProgram $dir/lpd/filter_MFCL2720DW \
--prefix PATH : ${stdenv.lib.makeBinPath [
coreutils ghostscript gnugrep gnused which
]}
# need to use i686 glibc here, these are 32bit proprietary binaries
interpreter=${pkgs.pkgsi686Linux.glibc}/lib/ld-linux.so.2
patchelf --set-interpreter "$interpreter" $dir/inf/braddprinter
patchelf --set-interpreter "$interpreter" $dir/lpd/brprintconflsr3
patchelf --set-interpreter "$interpreter" $dir/lpd/rawtobr3
'';
meta = {
description = "Brother MFC-L2720DW lpr driver";
homepage = http://www.brother.com/;
license = stdenv.lib.licenses.unfree;
platforms = [ "x86_64-linux" "i686-linux" ];
maintainers = [ stdenv.lib.maintainers.xeji ];
};
}

View file

@ -1,5 +1,7 @@
{ stdenv, fetchFromGitHub, fetchpatch, makeWrapper, cmake, llvmPackages, kernel
, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf, libelf }:
, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf, libelf
, systemtap
}:
stdenv.mkDerivation rec {
version = "0.5.0";
@ -15,6 +17,7 @@ stdenv.mkDerivation rec {
buildInputs = [
llvmPackages.llvm llvmPackages.clang-unwrapped kernel
elfutils python pythonPackages.netaddr luajit netperf iperf
systemtap.stapBuild
];
patches = [
@ -29,7 +32,12 @@ stdenv.mkDerivation rec {
# libelf is incompatible with elfutils-libelf
++ stdenv.lib.filter (x: x != libelf) kernel.moduleBuildDependencies;
cmakeFlags="-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules";
cmakeFlags =
[ "-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules"
"-DREVISION=${version}"
"-DENABLE_USDT=ON"
"-DENABLE_CPP_API=ON"
];
postInstall = ''
mkdir -p $out/bin $out/share

View file

@ -16,7 +16,14 @@ stdenv.mkDerivation {
preConfigure = ''
cd tools/perf
sed -i s,/usr/include/elfutils,$elfutils/include/elfutils, Makefile
substituteInPlace Makefile \
--replace /usr/include/elfutils $elfutils/include/elfutils
for x in util/build-id.c util/dso.c; do
substituteInPlace $x --replace /usr/lib/debug /run/current-system/sw/lib/debug
done
[ -f bash_completion ] && sed -i 's,^have perf,_have perf,' bash_completion
export makeFlags="DESTDIR=$out WERROR=0 $makeFlags"
export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -DTIPDIR=\"$out/share/doc/perf-tip\""
@ -42,6 +49,7 @@ stdenv.mkDerivation {
"-Wno-error=unused-const-variable" "-Wno-error=misleading-indentation"
];
separateDebugInfo = true;
installFlags = "install install-man ASCIIDOC8=1";
preFixup = ''

View file

@ -1,27 +1,36 @@
{ stdenv, fetchurl, pkgconfig,
boost, libyamlcpp, libsodium, sqlite, protobuf,
mysql57, postgresql, lua, openldap, geoip, curl
{ stdenv, fetchurl, pkgconfig
, boost, libyamlcpp, libsodium, sqlite, protobuf, botan2
, mysql57, postgresql, lua, openldap, geoip, curl, opendbx, unixODBC
}:
stdenv.mkDerivation rec {
name = "powerdns-${version}";
version = "4.0.5";
version = "4.1.1";
src = fetchurl {
url = "http://downloads.powerdns.com/releases/pdns-${version}.tar.bz2";
sha256 = "097ci4s2c63gl0bil8yh87dsy0sk3fds4w8cpyjh5kns6zazmj2v";
sha256 = "1fh4zgj0gxgcnnhnih8k6fbw18hb9brkkrfpx3mj8b4a3hr8ilq8";
};
nativeBuildInputs = [ pkgconfig ];
buildInputs = [ boost mysql57.connector-c postgresql lua openldap sqlite protobuf geoip libyamlcpp libsodium curl ];
buildInputs = [
boost mysql57.connector-c postgresql lua openldap sqlite protobuf geoip
libyamlcpp libsodium curl opendbx unixODBC botan2
];
patches = [
# checksum type not found, maybe a dependency is to old?
./skip-sha384-test.patch
];
# nix destroy with-modules arguments, when using configureFlags
preConfigure = ''
configureFlagsArray=(
"--with-modules=bind gmysql geoip gpgsql gsqlite3 ldap lua pipe random remote"
"--with-modules=bind gmysql geoip godbc gpgsql gsqlite3 ldap lua mydns opendbx pipe random remote"
--with-sqlite3
--with-socketdir=/var/lib/powerdns
--enable-libsodium
--enable-botan
--enable-tools
--disable-dependency-tracking
--disable-silent-rules
@ -29,7 +38,8 @@ stdenv.mkDerivation rec {
--enable-unit-tests
)
'';
checkPhase = "make check";
doCheck = true;
meta = with stdenv.lib; {
description = "Authoritative DNS server";

View file

@ -0,0 +1,14 @@
--- pdns-4.1.1.org/pdns/test-signers.cc 2018-02-17 11:43:15.953228279 +0000
+++ pdns-4.1.1/pdns/test-signers.cc 2018-02-17 11:44:21.089516393 +0000
@@ -212,11 +212,6 @@
BOOST_CHECK_EQUAL(ds2.getZoneRepresentation(), signer.dsSHA256);
}
- auto ds4 = makeDSFromDNSKey(name, drc, DNSSECKeeper::SHA384);
- if (!signer.dsSHA384.empty()) {
- BOOST_CHECK_EQUAL(ds4.getZoneRepresentation(), signer.dsSHA384);
- }
-
auto signature = dcke->sign(message);
BOOST_CHECK(dcke->verify(message, signature));

View file

@ -19,7 +19,7 @@ buildGoPackage rec {
meta = with stdenv.lib; {
description = "Share your terminal as a web application";
homepage = https://github.com/yudai/gotty;
maintainers = with maintainers; [ matthiasbeyer ];
maintainers = with maintainers; [ ];
license = licenses.mit;
};
}

View file

@ -15,11 +15,11 @@ mariadb = everything // {
};
common = rec { # attributes common to both builds
version = "10.2.12";
version = "10.2.13";
src = fetchurl {
url = "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz";
sha256 = "1v21sc1y5qndwdbr921da1s009bkn6pshwcgw47w7aygp9zjvcia";
sha256 = "0ly7dxc7rk327liya4kalgsw8irlxl0pl8gq0agdl18a63cpwbi7";
name = "mariadb-${version}.tar.gz";
};

View file

@ -0,0 +1,39 @@
{ lib, buildPythonApplication, fetchFromGitHub, python, protobuf, roundup }:
buildPythonApplication rec {
pname = "ddar";
version = "1.0";
src = fetchFromGitHub {
owner = "basak";
repo = pname;
rev = "v${version}";
sha256 = "158jdy5261k9yw540g48hddy5zyqrr81ir9fjlcy4jnrwfkg7ynm";
};
prePatch = ''
substituteInPlace t/local-functions \
--replace 'PATH="$ddar_src:$PATH"' 'PATH="$out/bin:$PATH"'
# Test requires additional software and compilation of some C programs
substituteInPlace t/basic-test.sh \
--replace it_stores_and_extracts_corpus0 dont_test
'';
preBuild = ''
make -f Makefile.prep synctus/ddar_pb2.py
'';
propagatedBuildInputs = [ protobuf ];
checkInputs = [ roundup ];
checkPhase = ''
roundup t/basic-test.sh
'';
meta = with lib; {
description = "Unix de-duplicating archiver";
license = licenses.gpl3;
homepage = src.meta.homepage;
};
}

View file

@ -0,0 +1,30 @@
{ stdenv, fetchFromGitHub }:
with stdenv.lib;
stdenv.mkDerivation rec {
name = "cue2pops-${version}";
version = "git-2018-01-04";
src = fetchFromGitHub {
owner = "makefu";
repo = "cue2pops-linux";
rev = "541863adf23fdecde92eba5899f8d58586ca4551";
sha256 = "05w84726g3k33rz0wwb9v77g7xh4cnhy9sxlpilf775nli9bynrk";
};
dontConfigure = true;
makeFlags = ["CC=cc"];
installPhase = ''
install --directory --mode=755 $out/bin
install --mode=755 cue2pops $out/bin
'';
meta = {
description = "Convert CUE to ISO suitable to POPStarter";
homepage = https://github.com/makefu/cue2pops-linux;
maintainers = with maintainers; [ AndersonTorres ];
platforms = platforms.all;
};
}

View file

@ -0,0 +1,58 @@
Seulement dans ceph: ceph.old
diff -ur ceph.old/src/kv/RocksDBStore.cc ceph/src/kv/RocksDBStore.cc
--- ceph.old/src/kv/RocksDBStore.cc 1980-01-02 00:00:00.000000000 +0100
+++ ceph/src/kv/RocksDBStore.cc 2018-01-24 14:08:35.017553372 +0100
@@ -505,7 +505,7 @@
// considering performance overhead, default is disabled
if (g_conf->rocksdb_perf) {
rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex);
- rocksdb::perf_context.Reset();
+ rocksdb::get_perf_context()->Reset();
}
RocksDBTransactionImpl * _t =
@@ -532,13 +532,13 @@
utime_t write_wal_time;
utime_t write_pre_and_post_process_time;
write_wal_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000);
write_memtable_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000);
write_delay_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000);
write_pre_and_post_process_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000);
logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time);
logger->tinc(l_rocksdb_write_delay_time, write_delay_time);
logger->tinc(l_rocksdb_write_wal_time, write_wal_time);
@@ -558,7 +558,7 @@
// considering performance overhead, default is disabled
if (g_conf->rocksdb_perf) {
rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex);
- rocksdb::perf_context.Reset();
+ rocksdb::get_perf_context()->Reset();
}
RocksDBTransactionImpl * _t =
@@ -586,13 +586,13 @@
utime_t write_wal_time;
utime_t write_pre_and_post_process_time;
write_wal_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000);
write_memtable_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000);
write_delay_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000);
write_pre_and_post_process_time.set_from_double(
- static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000);
+ static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000);
logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time);
logger->tinc(l_rocksdb_write_delay_time, write_delay_time);
logger->tinc(l_rocksdb_write_wal_time, write_wal_time);

View file

@ -1,20 +1,12 @@
{ callPackage, fetchgit, fetchpatch, ... } @ args:
callPackage ./generic.nix (args // rec {
version = "9.2.0";
version = "12.2.2";
src = fetchgit {
url = "https://github.com/ceph/ceph.git";
rev = "refs/tags/v${version}";
sha256 = "0a2v3bgkrbkzardcw7ymlhhyjlwi08qmcm7g34y2sjsxk9bd78an";
sha256 = "01anqxyffa8l2lzgyb0dj6fjicfjdx2cq9y1klh24x69gxwkdh00";
};
patches = [
./fix-pythonpath.patch
# For building with xfsprogs 4.5.0:
(fetchpatch {
url = "https://github.com/ceph/ceph/commit/602425abd5cef741fc1b5d4d1dd70c68e153fc8d.patch";
sha256 = "1iyf0ml2n50ki800vjich8lvzmcdviwqwkbs6cdj0vqv2nc5ii1g";
})
];
})

View file

@ -1,12 +1,17 @@
{ stdenv, ensureNewerSourcesHook, autoconf, automake, makeWrapper, pkgconfig
, libtool, which, git
, boost, python2Packages, libxml2, zlib
{ stdenv, ensureNewerSourcesHook, cmake, pkgconfig
, which, git
, boost, python2Packages
, libxml2, zlib
, openldap, lttngUst
, babeltrace, gperf
, cunit, snappy
, rocksdb
# Optional Dependencies
, snappy ? null, leveldb ? null, yasm ? null, fcgi ? null, expat ? null
, yasm ? null, fcgi ? null, expat ? null
, curl ? null, fuse ? null, libibverbs ? null, librdmacm ? null
, libedit ? null, libatomic_ops ? null, kinetic-cpp-client ? null
, rocksdb ? null, libs3 ? null
, libs3 ? null
# Mallocs
, jemalloc ? null, gperftools ? null
@ -30,21 +35,11 @@ assert cryptopp != null || (nss != null && nspr != null);
with stdenv;
with stdenv.lib;
let
inherit (python2Packages) python;
mkFlag = trueStr: falseStr: cond: name: val: "--"
+ (if cond then trueStr else falseStr)
+ name
+ optionalString (val != null && cond != false) "=${val}";
mkEnable = mkFlag "enable-" "disable-";
mkWith = mkFlag "with-" "without-";
mkOther = mkFlag "" "" true;
shouldUsePkg = pkg_: let pkg = (builtins.tryEval pkg_).value;
in if lib.any (x: x == system) (pkg.meta.platforms or [])
then pkg else null;
optSnappy = shouldUsePkg snappy;
optLeveldb = shouldUsePkg leveldb;
optYasm = shouldUsePkg yasm;
optFcgi = shouldUsePkg fcgi;
optExpat = shouldUsePkg expat;
@ -55,7 +50,6 @@ let
optLibedit = shouldUsePkg libedit;
optLibatomic_ops = shouldUsePkg libatomic_ops;
optKinetic-cpp-client = shouldUsePkg kinetic-cpp-client;
optRocksdb = shouldUsePkg rocksdb;
optLibs3 = if versionAtLeast version "10.0.0" then null else shouldUsePkg libs3;
optJemalloc = shouldUsePkg jemalloc;
@ -69,13 +63,11 @@ let
optLibxfs = shouldUsePkg libxfs;
optZfs = shouldUsePkg zfs;
hasServer = optSnappy != null && optLeveldb != null;
hasMon = hasServer;
hasMds = hasServer;
hasOsd = hasServer;
hasMon = true;
hasMds = true;
hasOsd = true;
hasRadosgw = optFcgi != null && optExpat != null && optCurl != null && optLibedit != null;
hasRocksdb = versionAtLeast version "9.0.0" && optRocksdb != null;
# TODO: Reenable when kinetic support is fixed
#hasKinetic = versionAtLeast version "9.0.0" && optKinetic-cpp-client != null;
@ -93,192 +85,80 @@ let
none = [ ];
};
wrapArgs = "--set PYTHONPATH \"$(toPythonPath $lib)\""
+ " --prefix PYTHONPATH : \"$(toPythonPath ${python2Packages.flask})\""
+ " --set PATH \"$out/bin\"";
ceph-python-env = python2Packages.python.withPackages (ps: [
ps.sphinx
ps.flask
ps.argparse
ps.cython
ps.setuptools
ps.pip
]);
in
stdenv.mkDerivation {
name="ceph-${version}";
inherit src;
patches = patches ++ [
./0001-Makefile-env-Don-t-force-sbin.patch
patches = [
# ./ceph-patch-cmake-path.patch
./0001-kv-RocksDBStore-API-break-additional.patch
];
nativeBuildInputs = [
autoconf automake makeWrapper pkgconfig libtool which git
cmake
pkgconfig which git
(ensureNewerSourcesHook { year = "1980"; })
]
++ optionals (versionAtLeast version "9.0.2") [
python2Packages.setuptools python2Packages.argparse
];
];
buildInputs = buildInputs ++ cryptoLibsMap.${cryptoStr} ++ [
boost python libxml2 optYasm optLibatomic_ops optLibs3 malloc python2Packages.flask zlib
] ++ optionals (versionAtLeast version "9.0.0") [
python2Packages.sphinx # Used for docs
boost ceph-python-env libxml2 optYasm optLibatomic_ops optLibs3
malloc zlib openldap lttngUst babeltrace gperf cunit
snappy rocksdb
] ++ optionals stdenv.isLinux [
linuxHeaders libuuid udev keyutils optLibaio optLibxfs optZfs
] ++ optionals hasServer [
optSnappy optLeveldb
] ++ optionals hasRadosgw [
optFcgi optExpat optCurl optFuse optLibedit
] ++ optionals hasRocksdb [
optRocksdb
] ++ optionals hasKinetic [
optKinetic-cpp-client
];
postPatch = ''
# Fix zfs pkgconfig detection
sed -i 's,\[zfs\],\[libzfs\],g' configure.ac
# Fix seagate kinetic linking
sed -i 's,libcrypto.a,-lcrypto,g' src/os/Makefile.am
'' + optionalString (versionAtLeast version "9.0.0") ''
# Fix gmock
patchShebangs src/gmock
preConfigure =''
# rip off submodule that interfer with system libs
rm -rf src/boost
rm -rf src/rocksdb
# require LD_LIBRARY_PATH for cython to find internal dep
export LD_LIBRARY_PATH="$PWD/build/lib:$LD_LIBRARY_PATH"
# requires setuptools due to embedded in-cmake setup.py usage
export PYTHONPATH="${python2Packages.setuptools}/lib/python2.7/site-packages/:$PYTHONPATH"
'';
preConfigure = ''
# Ceph expects the arch command to be usable during configure
# for detecting the assembly type
mkdir -p mybin
echo "#${stdenv.shell} -e" >> mybin/arch
echo "uname -m" >> mybin/arch
chmod +x mybin/arch
PATH="$PATH:$(pwd)/mybin"
./autogen.sh
# Fix the python site-packages install directory
sed -i "s,\(PYTHON\(\|_EXEC\)_PREFIX=\).*,\1'$lib',g" configure
# Fix the PYTHONPATH for installing ceph-detect-init to $out
mkdir -p "$(toPythonPath $out)"
export PYTHONPATH="$(toPythonPath $out):$PYTHONPATH"
'';
configureFlags = [
(mkOther "exec_prefix" "\${out}")
(mkOther "sysconfdir" "/etc")
(mkOther "localstatedir" "/var")
(mkOther "libdir" "\${lib}/lib")
(mkOther "includedir" "\${lib}/include")
(mkWith true "rbd" null)
(mkWith true "cephfs" null)
(mkWith hasRadosgw "radosgw" null)
(mkWith true "radosstriper" null)
(mkWith hasServer "mon" null)
(mkWith hasServer "osd" null)
(mkWith hasServer "mds" null)
(mkEnable true "client" null)
(mkEnable hasServer "server" null)
(mkWith (cryptoStr == "cryptopp") "cryptopp" null)
(mkWith (cryptoStr == "nss") "nss" null)
(mkEnable false "root-make-check" null)
(mkWith false "profiler" null)
(mkWith false "debug" null)
(mkEnable false "coverage" null)
(mkWith (optFuse != null) "fuse" null)
(mkWith (malloc == optJemalloc) "jemalloc" null)
(mkWith (malloc == optGperftools) "tcmalloc" null)
(mkEnable false "pgrefdebugging" null)
(mkEnable false "cephfs-java" null)
(mkWith (optLibatomic_ops != null) "libatomic-ops" null)
(mkWith true "ocf" null)
(mkWith hasKinetic "kinetic" null)
(mkWith hasRocksdb "librocksdb" null)
(mkWith false "librocksdb-static" null)
] ++ optional stdenv.isLinux [
(mkWith (optLibaio != null) "libaio" null)
(mkWith (optLibxfs != null) "libxfs" null)
(mkWith (optZfs != null) "libzfs" null)
] ++ optional (versionAtLeast version "0.94.3") [
(mkWith false "tcmalloc-minimal" null)
] ++ optional (versionAtLeast version "9.0.1") [
(mkWith false "valgrind" null)
] ++ optional (versionAtLeast version "9.0.2") [
(mkWith true "man-pages" null)
(mkWith true "systemd-libexec-dir" "\${out}/libexec")
] ++ optional (versionOlder version "9.1.0") [
(mkWith (optLibs3 != null) "system-libs3" null)
(mkWith true "rest-bench" null)
] ++ optional (versionAtLeast version "9.1.0") [
(mkWith true "rgw-user" "rgw")
(mkWith true "rgw-group" "rgw")
(mkWith true "systemd-unit-dir" "\${out}/etc/systemd/system")
(mkWith false "selinux" null) # TODO: Implement
cmakeFlags = [
"-DENABLE_GIT_VERSION=OFF"
"-DWITH_SYSTEM_BOOST=ON"
"-DWITH_SYSTEM_ROCKSDB=ON"
"-DWITH_LEVELDB=OFF"
# enforce shared lib
"-DBUILD_SHARED_LIBS=ON"
# disable cephfs, cmake build broken for now
"-DWITH_CEPHFS=OFF"
"-DWITH_LIBCEPHFS=OFF"
];
preBuild = optionalString (versionAtLeast version "9.0.0") ''
(cd src/gmock; make -j $NIX_BUILD_CORES)
'';
installFlags = [ "sysconfdir=\${out}/etc" ];
outputs = [ "out" "lib" ];
postInstall = ''
# Wrap all of the python scripts
wrapProgram $out/bin/ceph ${wrapArgs}
wrapProgram $out/bin/ceph-brag ${wrapArgs}
wrapProgram $out/bin/ceph-rest-api ${wrapArgs}
wrapProgram $out/sbin/ceph-create-keys ${wrapArgs}
wrapProgram $out/sbin/ceph-disk ${wrapArgs}
# Bring in lib as a run-time dependency
mkdir -p $out/nix-support
echo "$lib" > $out/nix-support/propagated-build-inputs
# Fix the python library loading
find $lib/lib -name \*.pyc -or -name \*.pyd -exec rm {} \;
for PY in $(find $lib/lib -name \*.py); do
LIBS="$(sed -n "s/.*find_library('\([^)]*\)').*/\1/p" "$PY")"
# Delete any calls to find_library
sed -i '/find_library/d' "$PY"
# Fix each find_library call
for LIB in $LIBS; do
REALLIB="$lib/lib/lib$LIB.so"
sed -i "s,\(lib$LIB = CDLL(\).*,\1'$REALLIB'),g" "$PY"
done
# Reapply compilation optimizations
NAME=$(basename -s .py "$PY")
rm -f "$PY"{c,o}
pushd "$(dirname $PY)"
python -c "import $NAME"
python -O -c "import $NAME"
popd
test -f "$PY"c
test -f "$PY"o
done
# Fix .la file link dependencies
find "$lib/lib" -name \*.la | xargs sed -i \
-e 's,-lboost_[a-z]*,-L${boost.out}/lib \0,g' \
'' + optionalString (cryptoStr == "cryptopp") ''
-e 's,-lcryptopp,-L${optCryptopp}/lib \0,g' \
'' + optionalString (cryptoStr == "nss") ''
-e 's,-l\(plds4\|plc4\|nspr4\),-L${optNss}/lib \0,g' \
-e 's,-l\(ssl3\|smime3\|nss3\|nssutil3\),-L${optNspr}/lib \0,g' \
'' + ''
'';
enableParallelBuilding = true;
outputs = [ "dev" "lib" "out" "doc" ];
meta = {
homepage = http://ceph.com/;
description = "Distributed storage system";
license = licenses.lgpl21;
maintainers = with maintainers; [ ak wkennington ];
maintainers = with maintainers; [ adev ak wkennington ];
platforms = platforms.unix;
# Broken because of https://lwn.net/Vulnerabilities/709844/
# and our version is quite out of date.
broken = true;
};
passthru.version = version;

View file

@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
name = "mergerfs-${version}";
version = "2.23.0";
version = "2.23.1";
# not using fetchFromGitHub because of changelog being built with git log
src = fetchgit {
url = "https://github.com/trapexit/mergerfs";
rev = "refs/tags/${version}";
sha256 = "0k4nn0f4c355q7hnni7iia8qi9m0khvyd04hx1hmlrnf0zsi9mfw";
sha256 = "0kbw64fkp3pjc7qm3y1q0ja20v3lhxi0nsq6gd19rq3m7ch9hcgl";
deepClone = true;
leaveDotGit = true;
};

View file

@ -2,15 +2,17 @@
stdenv.mkDerivation rec {
name = "snapraid-${version}";
version = "11.1";
version = "11.2";
src = fetchFromGitHub {
owner = "amadvance";
repo = "snapraid";
rev = "v${version}";
sha256 = "1vgyiagn6qvyyz4jkf8pzlg0w9apb6mzza97a9x03p82fav2afx0";
sha256 = "01z8fl3x2j5bnm0rybj7hhch18is6dkwqc43yzwc6418spr4imsd";
};
VERSION = version;
doCheck = true;
nativeBuildInputs = [ autoreconfHook ];

View file

@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
name = "otfcc-${version}";
version = "0.8.6";
version = "0.9.6";
src = fetchFromGitHub {
owner = "caryll";
repo = "otfcc";
rev = "v${version}";
sha256 = "0yy9awffxxs0cdlf0akld73ndnwmylxvplac4k6j7641m3vk1g8p";
sha256 = "1rnjfqqyc6d9nhlh8if9k37wk94mcwz4wf3k239v6idg48nrk10b";
};
nativeBuildInputs = [ premake5 ninja ];

View file

@ -0,0 +1,38 @@
{ stdenv, fetchFromGitHub, ronn, shocco }:
stdenv.mkDerivation rec {
name = "roundup-${version}";
version = "0.0.6";
src = fetchFromGitHub {
owner = "bmizerany";
repo = "roundup";
rev = "v${version}";
sha256 = "0nxaqmbv8mdvq9wcaqxk6k5mr31i68jzxf1wxa6pp7xp4prwdc9z";
};
prePatch = ''
# Don't change $PATH
substituteInPlace configure --replace PATH= NIRVANA=
# There are only man pages in sections 1 and 5 \
substituteInPlace Makefile --replace "{1..9}" "1 5"
'';
nativeBuildInputs = [ ronn shocco ];
installTargets = [ "install" "install-man" ];
preInstall = ''
for i in 1 5; do
mkdir -p $out/share/man/man$i
done
'';
meta = with stdenv.lib; {
description = "A unit testing tool for running test plans which are written in any POSIX shell";
homepage = http://bmizerany.github.io/roundup/;
license = licenses.mit;
maintainers = with maintainers; [ dotlambda ];
platforms = platforms.all;
};
}

View file

@ -1,14 +1,14 @@
{ stdenv, fetchFromGitHub, ncurses }:
stdenv.mkDerivation rec {
version = "v0.9.10";
version = "v0.9.11";
name = "smenu-${version}";
src = fetchFromGitHub {
owner = "p-gen";
repo = "smenu";
rev = version;
sha256 = "1fh0s5zhx8ps760w0yxjv682lhahz1j63i0gdwvvr5vnvyx6c40d";
sha256 = "1va5gsxniin02casgdrqxvpzccm0vwjiql60qrsvncrq6nm6bz0d";
};
buildInputs = [ ncurses ];

View file

@ -6,12 +6,12 @@ let
pythonPackages = python3Packages;
in
pythonPackages.buildPythonApplication rec {
version = "0.16.3";
version = "0.16.4";
name = "vdirsyncer-${version}";
src = fetchurl {
url = "mirror://pypi/v/vdirsyncer/${name}.tar.gz";
sha256 = "0dpwbfi97ksijqng191659m8k0v215y8ld95w8gb126m4m96qpzw";
sha256 = "03wva48bgv1ad3df6plc9b8xxh6k8bcaxrhlzwh81c9mzn5bspzv";
};
propagatedBuildInputs = with pythonPackages; [

View file

@ -1,6 +1,6 @@
{ stdenv, fetchFromGitHub, nodejs, which, python27, utillinux }:
let version = "20"; in
let version = "20.1"; in
stdenv.mkDerivation {
name = "cjdns-"+version;
@ -8,7 +8,7 @@ stdenv.mkDerivation {
owner = "cjdelisle";
repo = "cjdns";
rev = "cjdns-v${version}";
sha256 = "0gqcspiz1n0j711vwq807cy456dkcf03r376l04qc92173g2fzrx";
sha256 = "033q8av46y0q8vxyqvb4yjh1lz6a17mmk8lhdpwdcqnsws8xjjsw";
};
buildInputs = [ which python27 nodejs ] ++

View file

@ -1,14 +1,14 @@
{ stdenv, fetchFromGitHub, pythonPackages, httpie }:
pythonPackages.buildPythonApplication rec {
version = "0.11.0";
version = "0.11.1";
name = "http-prompt";
src = fetchFromGitHub {
rev = "v${version}";
repo = "http-prompt";
owner = "eliangcs";
sha256 = "0arl85880nnyfx8cvpzm6cr8nalhyrkz5zqfr628p487rwqv45ip";
sha256 = "0gi76wcn6lxkd74ljpbyhr7ylhq6sm8z7h66dnfmpsw4nhw49178";
};
propagatedBuildInputs = with pythonPackages; [

View file

@ -10,22 +10,13 @@ stdenv.mkDerivation rec {
buildInputs = [ openssl ];
preConfigure = stdenv.lib.optionalString stdenv.hostPlatform.isMusl ''
NIX_CFLAGS_COMPILE+=" -D_GNU_SOURCE"
'';
patches = stdenv.lib.optionals stdenv.hostPlatform.isMusl [
(fetchpatch {
url = "http://git.alpinelinux.org/cgit/aports/plain/main/iperf3/build-fixes.patch";
name = "fix-musl-build.patch";
sha256 = "0zvfjnqdldh6rc6qggyb310swdnl9qk0m3z1kklnqzgjsh8dskvl";
})
(fetchpatch {
url = "http://git.alpinelinux.org/cgit/aports/plain/main/iperf3/remove-pg-flags.patch";
name = "remove-pg-flags.patch";
sha256 = "0lnczhass24kgq59drgdipnhjnw4l1cy6gqza7f2ah1qr4q104rm";
})
];
];
postInstall = ''
ln -s iperf3 $out/bin/iperf

View file

@ -18,7 +18,8 @@ stdenv.mkDerivation rec {
buildInputs = [ cpio zlib bzip2 file libarchive nspr nss db xz python lua ];
# rpm/rpmlib.h includes popt.h, and then the pkg-config file mentions these as linkage requirements
propagatedBuildInputs = [ popt elfutils nss db bzip2 libarchive libbfd ];
propagatedBuildInputs = [ popt nss db bzip2 libarchive libbfd ]
++ stdenv.lib.optional stdenv.isLinux elfutils;
NIX_CFLAGS_COMPILE = "-I${nspr.dev}/include/nspr -I${nss.dev}/include/nss";
@ -59,6 +60,6 @@ stdenv.mkDerivation rec {
license = licenses.gpl2;
description = "The RPM Package Manager";
maintainers = with maintainers; [ copumpkin ];
platforms = platforms.linux;
platforms = platforms.linux ++ platforms.darwin;
};
}

View file

@ -2,7 +2,7 @@
buildGoPackage rec {
name = "sops-${version}";
version = "2.0.8";
version = "3.0.2";
goPackagePath = "go.mozilla.org/sops";
@ -10,7 +10,7 @@ buildGoPackage rec {
rev = version;
owner = "mozilla";
repo = "sops";
sha256 = "0kawnp24i3r981hz6apfwhgp71002vjq7ir54arq0zkssmykms1c";
sha256 = "0zszlb35cmw9j9dg1bpcbwxwh094wcfxhas4ns58jp5n79rqwv9i";
};
meta = with stdenv.lib; {

View file

@ -3,11 +3,11 @@
stdenv.mkDerivation rec {
name = "supervise-${version}";
version = "1.3.0";
version = "1.4.0";
src = fetchzip {
url = "https://github.com/catern/supervise/releases/download/v${version}/supervise-${version}.tar.gz";
sha256 = "1y3jaqzprlkba2165nlcr250jc3mpxawd5sfjryb3db1nw66al04";
sha256 = "0jk6q2f67pfs18ah040lmsbvbrnjap7w04jjddsfn1j5bcrvs13x";
};
meta = with stdenv.lib; {

View file

@ -0,0 +1,28 @@
{ stdenv, fetchFromGitHub, perlPackages, pythonPackages }:
stdenv.mkDerivation rec {
name = "shocco-${version}";
version = "1.0";
src = fetchFromGitHub {
owner = "rtomayko";
repo = "shocco";
rev = version;
sha256 = "1nkwcw9fqf4vyrwidqi6by7nrmainkjqkirkz3yxmzk6kzwr38mi";
};
prePatch = ''
# Don't change $PATH
substituteInPlace configure --replace PATH= NIRVANA=
'';
buildInputs = [ perlPackages.TextMarkdown pythonPackages.pygments ];
meta = with stdenv.lib; {
description = "A quick-and-dirty, literate-programming-style documentation generator for / in POSIX shell";
homepage = https://rtomayko.github.io/shocco/;
license = licenses.mit;
platforms = platforms.all;
maintainers = with maintainers; [ dotlambda ];
};
}

View file

@ -687,6 +687,13 @@ with pkgs;
androidsdk_extras = self.androidenv.androidsdk_8_0_extras;
webos = recurseIntoAttrs {
cmake-modules = callPackage ../development/mobile/webos/cmake-modules.nix { };
novacom = callPackage ../development/mobile/webos/novacom.nix { };
novacomd = callPackage ../development/mobile/webos/novacomd.nix { };
};
arc-theme = callPackage ../misc/themes/arc { };
arc-kde-theme = callPackage ../misc/themes/arc-kde { };
@ -884,6 +891,8 @@ with pkgs;
inherit (darwin.apple_sdk.frameworks) Cocoa;
};
cue2pops = callPackage ../tools/cd-dvd/cue2pops { };
cabal2nix = haskell.lib.overrideCabal haskellPackages.cabal2nix (drv: {
isLibrary = false;
enableSharedExecutables = false;
@ -1033,6 +1042,8 @@ with pkgs;
dateutils = callPackage ../tools/misc/dateutils { };
ddar = pythonPackages.callPackage ../tools/backup/ddar { };
ddate = callPackage ../tools/misc/ddate { };
dehydrated = callPackage ../tools/admin/dehydrated { };
@ -1511,9 +1522,8 @@ with pkgs;
nrg2iso = callPackage ../tools/cd-dvd/nrg2iso { };
libceph = ceph.lib;
ceph = callPackage ../tools/filesystems/ceph { boost = boost159; };
ceph = callPackage ../tools/filesystems/ceph { boost = boost165; };
ceph-dev = ceph;
#ceph-dev = lowPrio (callPackage ../tools/filesystems/ceph/dev.nix { });
cfdg = callPackage ../tools/graphics/cfdg {
ffmpeg = ffmpeg_2;
@ -4500,6 +4510,8 @@ with pkgs;
rnv = callPackage ../tools/text/xml/rnv { };
roundup = callPackage ../tools/misc/roundup { };
routino = callPackage ../tools/misc/routino { };
rq = callPackage ../development/tools/rq {
@ -4630,6 +4642,8 @@ with pkgs;
sharutils = callPackage ../tools/archivers/sharutils { };
shocco = callPackage ../tools/text/shocco { };
shotwell = callPackage ../applications/graphics/shotwell { };
shout = nodePackages.shout;
@ -5757,7 +5771,7 @@ with pkgs;
compcert = callPackage ../development/compilers/compcert { };
cpp-gsl = callPackage ../development/libraries/cpp-gsl { };
# Users installing via `nix-env` will likely be using the REPL,
# which has a hard dependency on Z3, so make sure it is available.
cryptol = haskellPackages.cryptol.overrideDerivation (oldAttrs: {
@ -6749,6 +6763,8 @@ with pkgs;
yosys = callPackage ../development/compilers/yosys { };
z88dk = callPackage ../development/compilers/z88dk { };
zulu8 = callPackage ../development/compilers/zulu/8.nix { };
zulu9 = callPackage ../development/compilers/zulu { };
zulu = zulu9;
@ -7082,7 +7098,13 @@ with pkgs;
pyrex096 = callPackage ../development/interpreters/pyrex/0.9.6.nix { };
racket = callPackage ../development/interpreters/racket { };
racket = callPackage ../development/interpreters/racket {
# racket 6.11 doesn't build with gcc6 + recent glibc:
# https://github.com/racket/racket/pull/1886
# https://github.com/NixOS/nixpkgs/pull/31017#issuecomment-343574769
stdenv = overrideCC stdenv gcc7;
};
racket-minimal = callPackage ../development/interpreters/racket/minimal.nix { };
rakudo = callPackage ../development/interpreters/rakudo {
inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
@ -7319,6 +7341,8 @@ with pkgs;
bazel_0_4 = callPackage ../development/tools/build-managers/bazel/0.4.nix { };
bazel = callPackage ../development/tools/build-managers/bazel { };
buildBazelPackage = callPackage ../build-support/build-bazel-package { };
bear = callPackage ../development/tools/build-managers/bear { };
bin_replace_string = callPackage ../development/tools/misc/bin_replace_string { };
@ -16949,6 +16973,8 @@ with pkgs;
ptask = callPackage ../applications/misc/ptask { };
pulseaudio-dlna = callPackage ../applications/audio/pulseaudio-dlna { };
pulseview = libsForQt5.callPackage ../applications/science/electronics/pulseview { };
puredata = callPackage ../applications/audio/puredata { };
@ -18576,6 +18602,8 @@ with pkgs;
flightgear = libsForQt5.callPackage ../games/flightgear { };
flock = callPackage ../development/tools/flock { };
freecell-solver = callPackage ../games/freecell-solver { };
freeciv = callPackage ../games/freeciv { };
@ -19133,6 +19161,7 @@ with pkgs;
gnomeExtensions = {
appindicator = callPackage ../desktops/gnome-3/extensions/appindicator { };
battery-status = callPackage ../desktops/gnome-3/extensions/battery-status { };
caffeine = callPackage ../desktops/gnome-3/extensions/caffeine { };
clipboard-indicator = callPackage ../desktops/gnome-3/extensions/clipboard-indicator { };
dash-to-dock = callPackage ../desktops/gnome-3/extensions/dash-to-dock { };
@ -19142,6 +19171,7 @@ with pkgs;
nohotcorner = callPackage ../desktops/gnome-3/extensions/nohotcorner { };
pixel-saver = callPackage ../desktops/gnome-3/extensions/pixel-saver { };
remove-dropdown-arrows = callPackage ../desktops/gnome-3/extensions/remove-dropdown-arrows { };
taskwhisperer = callPackage ../desktops/gnome-3/extensions/taskwhisperer { };
topicons-plus = callPackage ../desktops/gnome-3/extensions/topicons-plus { };
};
@ -19722,6 +19752,8 @@ with pkgs;
pcalc = callPackage ../applications/science/math/pcalc { };
bcal = callPackage ../applications/science/math/bcal { };
pspp = callPackage ../applications/science/math/pspp {
inherit (gnome3) gtksourceview;
};
@ -20279,6 +20311,9 @@ with pkgs;
mfcl2700dncupswrapper = callPackage ../misc/cups/drivers/mfcl2700dncupswrapper { };
mfcl2700dnlpr = callPackage_i686 ../misc/cups/drivers/mfcl2700dnlpr { };
mfcl2720dwcupswrapper = callPackage ../misc/cups/drivers/mfcl2720dwcupswrapper { };
mfcl2720dwlpr = callPackage ../misc/cups/drivers/mfcl2720dwlpr { };
samsung-unified-linux-driver_1_00_37 = callPackage ../misc/cups/drivers/samsung { };
samsung-unified-linux-driver_4_01_17 = callPackage ../misc/cups/drivers/samsung/4.01.17.nix { };
samsung-unified-linux-driver = callPackage ../misc/cups/drivers/samsung/4.00.39 { };

View file

@ -6292,6 +6292,22 @@ let self = _self // overrides; _self = with self; {
buildInputs = [ DataUUID CryptCBC ];
};
GSSAPI = buildPerlPackage rec {
name = "GSSAPPI-0.28";
src = fetchurl {
url = "http://search.cpan.org/CPAN/authors/id/A/AG/AGROLMS/GSSAPI-0.28.tar.gz";
sha256 = "1mkhwxjjlhr58pd770i9gnf7zy7jj092iv6jfbnb8bvnc5xjr3vx";
};
buildInputs = [ TestPod ];
propagatedBuildInputs = [ pkgs.heimdalFull ];
meta = {
maintainers = [ maintainers.limeytexan ];
description = "Perl extension providing access to the GSSAPIv2 library";
license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];
};
makeMakerFlags = "--gssapiimpl ${pkgs.heimdalFull.out}";
};
Gtk2 = buildPerlPackage rec {
name = "Gtk2-1.2498";
src = fetchurl {

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