Merge staging-next into staging

This commit is contained in:
github-actions[bot] 2021-06-25 12:06:08 +00:00 committed by GitHub
commit be086cc67b
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
138 changed files with 9948 additions and 7275 deletions

View file

@ -1062,7 +1062,11 @@
email = "babathriviere@gmail.com";
github = "babariviere";
githubId = 12128029;
name = "babariviere";
name = "Bastien Rivière";
keys = [{
longkeyid = "rsa4096/0xF202AD3B6EDF4BD1";
fingerprint = "2F85 B362 B274 0012 37E2 81EE F202 AD3B 6EDF 4BD1";
}];
};
babbaj = {
name = "babbaj";
@ -1226,6 +1230,16 @@
github = "benneti";
githubId = 11725645;
};
bertof = {
name = "Filippo Berto";
email = "berto.f@protonmail.com";
github = "bertof";
githubId = 9915675;
keys = [{
longkeyid = "rsa4096/0xFE98AE5EC52B1056";
fingerprint = "17C5 1EF9 C0FE 2EB2 FE56 BB53 FE98 AE5E C52B 1056";
}];
};
bennofs = {
email = "benno.fuenfstueck@gmail.com";
github = "bennofs";
@ -2541,6 +2555,12 @@
githubId = 8404455;
name = "Diego Lelis";
};
diffumist = {
email = "diffumist@gmail.com";
github = "diffumist";
githubId = 32810399;
name = "Diffumist";
};
diogox = {
name = "Diogo Xavier";
email = "13244408+diogox@users.noreply.github.com";

View file

@ -161,6 +161,7 @@ with lib.maintainers; {
ekleog
ralith
mjlbach
dandellion
];
scope = "Maintain the ecosystem around Matrix, a decentralized messenger.";
};

View file

@ -20,4 +20,14 @@
essential utilities. Now you can start <package>sway</package> from the TTY
console.
</para>
<para>
If you are using a wlroots-based compositor, like sway, and want to be able to
share your screen, you might want to activate this option:
<programlisting>
<xref linkend="opt-xdg.portal.wlr.enable"/> = true;
</programlisting>
and configure Pipewire using <xref linkend="opt-services.pipewire.enable"/>
and related options.
</para>
</chapter>

View file

@ -241,11 +241,11 @@ xkb_symbols &quot;us-greek&quot;
description = "US layout with alt-gr greek";
languages = [ "eng" ];
symbolsFile = /yourpath/symbols/us-greek;
}
};
</programlisting>
<note>
<para>
The name should match the one given to the
The name (after <literal>extraLayouts.</literal>) should match the one given to the
<literal>xkb_symbols</literal> block.
</para>
</note>

View file

@ -79,6 +79,14 @@
<literal>fetchConfigured = false;</literal>.
</para>
</listitem>
<listitem>
<para>
<literal>consul</literal> was upgraded to a new major release
with breaking changes, see
<link xlink:href="https://github.com/hashicorp/consul/releases/tag/v1.10.0">upstream
changelog</link>.
</para>
</listitem>
<listitem>
<para>
fsharp41 has been removed in preference to use the latest

View file

@ -26,6 +26,8 @@ In addition to numerous new and upgraded packages, this release has the followin
- Those making use of `buildBazelPackage` will need to regenerate the fetch hashes (preferred), or set `fetchConfigured = false;`.
- `consul` was upgraded to a new major release with breaking changes, see [upstream changelog](https://github.com/hashicorp/consul/releases/tag/v1.10.0).
- fsharp41 has been removed in preference to use the latest dotnet-sdk
- The following F#-related packages have been removed for being unmaintaned. Please use `fetchNuGet` for specific packages.

View file

@ -0,0 +1,67 @@
{ config, pkgs, lib, ... }:
with lib;
let
cfg = config.xdg.portal.wlr;
package = pkgs.xdg-desktop-portal-wlr;
settingsFormat = pkgs.formats.ini { };
configFile = settingsFormat.generate "xdg-desktop-portal-wlr.ini" cfg.settings;
in
{
meta = {
maintainers = with maintainers; [ minijackson ];
};
options.xdg.portal.wlr = {
enable = mkEnableOption ''
desktop portal for wlroots-based desktops
This will add the <package>xdg-desktop-portal-wlr</package> package into
the <option>xdg.portal.extraPortals</option> option, and provide the
configuration file
'';
settings = mkOption {
description = ''
Configuration for <package>xdg-desktop-portal-wlr</package>.
See <literal>xdg-desktop-portal-wlr(5)</literal> for supported
values.
'';
type = types.submodule {
freeformType = settingsFormat.type;
};
default = { };
# Example taken from the manpage
example = literalExample ''
{
screencast = {
output_name = "HDMI-A-1";
max_fps = 30;
exec_before = "disable_notifications.sh";
exec_after = "enable_notifications.sh";
chooser_type = "simple";
chooser_cmd = "''${pkgs.slurp}/bin/slurp -f %o -or";
};
}
'';
};
};
config = mkIf cfg.enable {
xdg.portal = {
enable = true;
extraPortals = [ package ];
};
systemd.user.services.xdg-desktop-portal-wlr.serviceConfig.ExecStart = [
# Empty ExecStart value to override the field
""
"${package}/libexec/xdg-desktop-portal-wlr --config=${configFile}"
];
};
}

View file

@ -9,6 +9,7 @@
./config/xdg/menus.nix
./config/xdg/mime.nix
./config/xdg/portal.nix
./config/xdg/portals/wlr.nix
./config/appstream.nix
./config/console.nix
./config/xdg/sounds.nix

View file

@ -10,7 +10,7 @@ let
postgresqlPackage = if config.services.postgresql.enable then
config.services.postgresql.package
else
pkgs.postgresql;
pkgs.postgresql_12;
gitlabSocket = "${cfg.statePath}/tmp/sockets/gitlab.socket";
gitalySocket = "${cfg.statePath}/tmp/sockets/gitaly.socket";
@ -841,6 +841,10 @@ in {
assertion = cfg.secrets.jwsFile != null;
message = "services.gitlab.secrets.jwsFile must be set!";
}
{
assertion = versionAtLeast postgresqlPackage.version "12.0.0";
message = "PostgreSQL >=12 is required to run GitLab 14.";
}
];
environment.systemPackages = [ pkgs.git gitlab-rake gitlab-rails cfg.packages.gitlab-shell ];

View file

@ -432,6 +432,7 @@ in
trezord = handleTest ./trezord.nix {};
trickster = handleTest ./trickster.nix {};
trilium-server = handleTestOn ["x86_64-linux"] ./trilium-server.nix {};
txredisapi = handleTest ./txredisapi.nix {};
tuptime = handleTest ./tuptime.nix {};
turbovnc-headless-server = handleTest ./turbovnc-headless-server.nix {};
ucarp = handleTest ./ucarp.nix {};

View file

@ -15,7 +15,10 @@ import ./make-test-python.nix ({ pkgs, lib, ...} :
# For glinfo and wayland-info:
systemPackages = with pkgs; [ mesa-demos wayland-utils ];
# Use a fixed SWAYSOCK path (for swaymsg):
variables."SWAYSOCK" = "/tmp/sway-ipc.sock";
variables = {
"SWAYSOCK" = "/tmp/sway-ipc.sock";
"WLR_RENDERER_ALLOW_SOFTWARE" = "1";
};
# For convenience:
shellAliases = {
test-x11 = "glinfo | head -n 3 | tee /tmp/test-x11.out && touch /tmp/test-x11-exit-ok";
@ -101,6 +104,10 @@ import ./make-test-python.nix ({ pkgs, lib, ...} :
# Exit Sway and verify process exit status 0:
machine.succeed("su - alice -c 'swaymsg exit || true'")
machine.wait_for_file("/tmp/sway-exit-ok")
machine.wait_until_fails("pgrep -x sway")
# TODO: Sway currently segfaults after "swaymsg exit" but only in this VM test:
# machine # [ 104.090032] sway[921]: segfault at 3f800008 ip 00007f7dbdc25f10 sp 00007ffe282182f8 error 4 in libwayland-server.so.0.1.0[7f7dbdc1f000+8000]
# machine.wait_for_file("/tmp/sway-exit-ok")
'';
})

View file

@ -0,0 +1,27 @@
import ./make-test-python.nix ({ pkgs, ... }:
{
name = "txredisapi";
meta = with pkgs.lib.maintainers; {
maintainers = [ dandellion ];
};
nodes = {
machine =
{ pkgs, ... }:
{
services.redis.enable = true;
services.redis.unixSocket = "/run/redis/redis.sock";
environment.systemPackages = with pkgs; [ (python38.withPackages (ps: [ ps.twisted ps.txredisapi ps.mock ]))];
};
};
testScript = ''
start_all()
machine.wait_for_unit("redis")
machine.wait_for_open_port("6379")
tests = machine.succeed("PYTHONPATH=\"${pkgs.python3Packages.txredisapi.src}\" python -m twisted.trial ${pkgs.python3Packages.txredisapi.src}/tests")
'';
})

View file

@ -1,11 +1,12 @@
{ lib
, python3
, python3Packages
, fetchFromGitHub
, wrapQtAppsHook
, borgbackup
, qt5
}:
python3.pkgs.buildPythonApplication rec {
python3Packages.buildPythonApplication rec {
pname = "vorta";
version = "0.7.7";
@ -16,19 +17,34 @@ python3.pkgs.buildPythonApplication rec {
sha256 = "sha256-AH9CvoWAaNLPLC+NL+VXtYq9CNCMt0AFtC1ZGXSlcHQ=";
};
postPatch = ''
sed -i -e '/setuptools_git/d' -e '/pytest-runner/d' setup.cfg
'';
nativeBuildInputs = [ wrapQtAppsHook ];
propagatedBuildInputs = with python3.pkgs; [
paramiko peewee pyqt5 python-dateutil APScheduler psutil qdarkstyle
secretstorage appdirs setuptools
propagatedBuildInputs = with python3Packages; [
paramiko
peewee
pyqt5
python-dateutil
APScheduler
psutil
qdarkstyle
secretstorage
appdirs
setuptools
];
# QT setup in tests broken.
doCheck = false;
postPatch = ''
substituteInPlace setup.cfg \
--replace setuptools_git "" \
--replace pytest-runner ""
substituteInPlace src/vorta/assets/metadata/com.borgbase.Vorta.desktop \
--replace Exec=vorta "Exec=$out/bin/vorta" \
--replace com.borgbase.Vorta "com.borgbase.Vorta-symbolic"
'';
postInstall = ''
install -Dm644 src/vorta/assets/metadata/com.borgbase.Vorta.desktop $out/share/applications/com.borgbase.Vorta.desktop
'';
preFixup = ''
makeWrapperArgs+=(
@ -37,6 +53,37 @@ python3.pkgs.buildPythonApplication rec {
)
'';
checkInputs = with python3Packages; [
pytest-qt
pytest-mock
pytestCheckHook
];
preCheck = ''
export HOME=$(mktemp -d)
# For tests/test_misc.py::test_autostart
mkdir -p $HOME/.config/autostart
export QT_PLUGIN_PATH="${qt5.qtbase.bin}/${qt5.qtbase.qtPluginPrefix}"
export QT_QPA_PLATFORM=offscreen
'';
disabledTestPaths = [
"tests/test_archives.py"
"tests/test_borg.py"
"tests/test_lock.py"
"tests/test_notifications.py"
];
disabledTests = [
"diff_archives_dict_issue-Users"
"diff_archives-test"
"test_repo_unlink"
"test_repo_add_success"
"test_ssh_dialog"
"test_create"
"test_scheduler_create_backup"
];
meta = with lib; {
license = licenses.gpl3Only;
homepage = "https://vorta.borgbase.com/";

View file

@ -7,16 +7,16 @@
}:
rustPlatform.buildRustPackage rec {
pname = "polkadot";
version = "0.9.5";
version = "0.9.6";
src = fetchFromGitHub {
owner = "paritytech";
repo = "polkadot";
rev = "v${version}";
sha256 = "sha256-fe6iCSp4TxKKsVVBrvbSMROXqigTfxFCOLN1gAqRTv0=";
sha256 = "sha256-waoNCEGHFjY91ted4oBtwxW6/beqW/8IwRIE4rG+fKQ=";
};
cargoSha256 = "18pg09v14991aqq7cjg0w5x36526y6sx1hvxlqb20zvrgmv722cq";
cargoSha256 = "17c45xi1wr77jbkcl1mkxflc8f9hilil02c43fihvlh2lm8kcs5j";
nativeBuildInputs = [ clang ];

View file

@ -26,13 +26,13 @@ let
in
stdenv.mkDerivation rec {
pname = "megapixels";
version = "1.0.1";
version = "1.1.0";
src = fetchFromSourcehut {
owner = "~martijnbraam";
repo = "megapixels";
rev = version;
sha256 = "0k9a5dpr5z0g7ngbhk4j22sbs1ffxiwg8wmbzgggdc9xvwmkgppr";
sha256 = "0y56c6vchlzidfmp3a3bdc228vbhy7zaxvmhkyxchfb752yzr0n3";
};
nativeBuildInputs = [ meson ninja pkg-config wrapGAppsHook ];

View file

@ -6,13 +6,13 @@
mkDerivation rec {
pname = "opentx";
version = "2.3.11";
version = "2.3.13";
src = fetchFromGitHub {
owner = "opentx";
repo = "opentx";
rev = "release/${version}";
sha256 = "sha256-0B41TkTs4sNGYzpMGbsgCLT2ThkP6foeuwLUIzKKGkU=";
sha256 = "sha256-Bi/Cz2T2NdtnJZHav8qvo+gErPsR8Ym7K3KcD5APt6Y=";
};
nativeBuildInputs = [ cmake gcc-arm-embedded python3Packages.pillow ];

View file

@ -18,9 +18,9 @@
}
},
"beta": {
"version": "92.0.4515.59",
"sha256": "0lpmd4sybr9qxqj7ab25xjliaw2dk9njnik51gdffrrwphv9qdxb",
"sha256bin64": "0qq9a3pzyn5d6bagx3py86ksl8n488lmlrmadgam2gb7421jq71a",
"version": "92.0.4515.70",
"sha256": "06yhpxr5bg0gx7hmrhc6zg4gr1d9s34y2rb98rpl4dilmc548i6q",
"sha256bin64": "1fkakh1r87pg5nr101m6v86y8iyyfba8vnzrg0229kcar7v8wzf7",
"deps": {
"gn": {
"version": "2021-05-07",

View file

@ -2,18 +2,18 @@
buildGoModule rec {
pname = "argocd";
version = "2.0.1";
commit = "33eaf11e3abd8c761c726e815cbb4b6af7dcb030";
version = "2.0.4";
commit = "0842d448107eb1397b251e63ec4d4bc1b4efdd6e";
tag = "v${version}";
src = fetchFromGitHub {
owner = "argoproj";
repo = "argo-cd";
rev = tag;
sha256 = "sha256-j/RdiMeaYxlmEvo5CKrGvkp25MrFsSYh+XNYWNcs0PE=";
sha256 = "sha256-SKSAJtp20f6A+CvrsBEmbcNJAKI5b4Wm4K0cr/lGo64=";
};
vendorSha256 = "sha256-8j5v99wOHM/SndJwpmGWiCFEyw4K513HEEbkPrD8C90=";
vendorSha256 = "sha256-RbEqivzTpXVQp4zl0zZWAh6qCr2KZSJ6Bj2pZaClQaQ=";
nativeBuildInputs = [ packr makeWrapper installShellFiles ];
@ -66,8 +66,9 @@ buildGoModule rec {
'';
meta = with lib; {
description = "Argo CD is a declarative, GitOps continuous delivery tool for Kubernetes";
homepage = "https://github.com/argoproj/argo";
description = "Declarative continuous deployment for Kubernetes";
downloadPage = "https://github.com/argoproj/argo-cd";
homepage = "https://argoproj.github.io/projects/argo-cd";
license = licenses.asl20;
maintainers = with maintainers; [ shahrukh330 superherointj ];
};

View file

@ -6,13 +6,13 @@
mkDerivation rec {
pname = "stellarium";
version = "0.21.0";
version = "0.21.1";
src = fetchFromGitHub {
owner = "Stellarium";
repo = "stellarium";
rev = "v${version}";
sha256 = "sha256-LOBWfKLtoFemiWBUVayIBG0DORvjI6h9kgaPH9hGmKY=";
sha256 = "sha256-dAdB57phD5phl8dQZIHtqtnA2LZqR+JoXTzIBtqBevA=";
};
nativeBuildInputs = [ cmake perl wrapQtAppsHook ];

View file

@ -1,12 +1,25 @@
{ lib, mkDerivationWith, wrapQtAppsHook, python3Packages, fetchFromGitHub
, qtbase }:
{ lib
, python3
, fetchFromGitHub
, wrapQtAppsHook
}:
let
version = "0.3.8";
python = python3.override {
packageOverrides = self: super: {
scipy = super.scipy.overridePythonAttrs (oldAttrs: rec {
version = "1.4.1";
src = oldAttrs.src.override {
inherit version;
sha256 = "0ndw7zyxd2dj37775mc75zm4fcyiipnqxclc45mkpxy8lvrvpqfy";
};
doCheck = false;
});
};
};
in python.pkgs.buildPythonApplication rec {
pname = "nanovna-saver";
in mkDerivationWith python3Packages.buildPythonApplication {
inherit pname version;
version = "0.3.8";
src = fetchFromGitHub {
owner = "NanoVNA-Saver";
@ -17,9 +30,9 @@ in mkDerivationWith python3Packages.buildPythonApplication {
nativeBuildInputs = [ wrapQtAppsHook ];
propagatedBuildInputs = with python3Packages; [
propagatedBuildInputs = with python.pkgs; [
cython
scipy_1_4
scipy
pyqt5
pyserial
numpy
@ -30,10 +43,11 @@ in mkDerivationWith python3Packages.buildPythonApplication {
dontWrapGApps = true;
dontWrapQtApps = true;
postFixup = ''
wrapProgram $out/bin/NanoVNASaver \
"''${gappsWrapperArgs[@]}" \
preFixup = ''
makeWrapperArgs+=(
"''${gappsWrapperArgs[@]}"
"''${qtWrapperArgs[@]}"
)
'';
meta = with lib; {

View file

@ -2,11 +2,11 @@
stdenv.mkDerivation rec {
pname = "eprover";
version = "2.5";
version = "2.6";
src = fetchurl {
url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz";
sha256 = "0jj0zkiqpcx9xp16spkskrv3jycprz7jg1g97i67j43c4yvxylwa";
sha256 = "sha256-qh896qIpFR5g1gdWAwGkbNJLBqUQCeCpuoYHHkDXPt0=";
};
buildInputs = [ which ];

View file

@ -2,11 +2,12 @@
python3Packages.buildPythonApplication rec {
pname = "snakemake";
version = "6.0.5";
version = "6.5.0";
propagatedBuildInputs = with python3Packages; [
appdirs
ConfigArgParse
connection-pool
datrie
docutils
filelock
@ -19,13 +20,15 @@ python3Packages.buildPythonApplication rec {
ratelimiter
requests
smart-open
stopit
tabulate
toposort
wrapt
];
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3";
sha256 = "b166ec74537e02553fcaf0ddcffc32dfdb9dcaa1260af297a56eded6a179b2ee";
};
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json

View file

@ -3,11 +3,11 @@
buildPythonApplication rec {
pname = "MAVProxy";
version = "1.8.37";
version = "1.8.39";
src = fetchPypi {
inherit pname version;
sha256 = "0527c65b55652a130c44c131cce5644cc5ac00a3f85edb81899f79f5e3ee16fb";
sha256 = "sha256-1RXuAiz9i5ZnLtDGQ+o3DNgWJ2FDJGIoelmlDmEzrts=";
};
postPatch = ''

View file

@ -14,6 +14,14 @@ stdenv.mkDerivation rec {
sha256 = "07y51l06n344pjyxdddq6sdvxw25nl10irl4avynkqjnqyqsiw97";
};
strictDeps = true;
nativeBuildInputs = [
makeWrapper
pkg-config
fontconfig
];
buildInputs = [
xorg.libXaw
xorg.xorgproto
@ -24,11 +32,8 @@ stdenv.mkDerivation rec {
xorg.libICE
ncurses
freetype
fontconfig
pkg-config
xorg.libXft
xorg.luit
makeWrapper
];
patches = [ ./sixel-256.support.patch ]

View file

@ -2,11 +2,11 @@
stdenv.mkDerivation rec {
pname = "gerrit";
version = "3.3.2";
version = "3.4.0";
src = fetchurl {
url = "https://gerrit-releases.storage.googleapis.com/gerrit-${version}.war";
sha256 = "sha256-tqlJANxJl2r0ZxPb7d8KU9cRMQUFPUIm/zMp4zREGL0=";
sha256 = "sha256-GNUpSK9cczGISyvo05KrLzeO+zRm5dEYOmX2Oy7TjzE=";
};
buildCommand = ''

View file

@ -0,0 +1,49 @@
{ lib, fetchFromGitHub
, coreutils
, git
, ncurses
, rustPlatform
, sqlite
}:
rustPlatform.buildRustPackage rec {
pname = "git-branchless";
version = "0.3.2";
src = fetchFromGitHub {
owner = "arxanas";
repo = "git-branchless";
rev = "v${version}";
sha256 = "0pfiyb23ah1h6risrhjr8ky7b1k1f3yfc3z70s92q3czdlrk6k07";
};
cargoSha256 = "0gplx80xhpz8kwry7l4nv4rlj9z02jg0sgb6zy1y3vd9s2j5wals";
# Remove path hardcodes patching if they get fixed upstream, see:
# https://github.com/arxanas/git-branchless/issues/26
postPatch = ''
# Inline test hardcodes `echo` location.
substituteInPlace ./src/commands/wrap.rs --replace '/bin/echo' '${coreutils}/bin/echo'
# Tests in general hardcode `git` location.
substituteInPlace ./src/testing.rs --replace '/usr/bin/git' '${git}/bin/git'
'';
buildInputs = [
ncurses
sqlite
];
preCheck = ''
# Tests require path to git.
export PATH_TO_GIT=${git}/bin/git
'';
meta = with lib; {
description = "A suite of tools to help you visualize, navigate, manipulate, and repair your commit history";
homepage = "https://github.com/arxanas/git-branchless";
license = licenses.asl20;
maintainers = with maintainers; [ nh2 ];
};
}

View file

@ -4,11 +4,11 @@
buildPythonApplication rec {
pname = "git-machete";
version = "3.2.0";
version = "3.2.1";
src = fetchPypi {
inherit pname version;
sha256 = "1bssk0jqspmsvr8kha9l5cslyhjvc50y30wdgavbca256lv75gh8";
sha256 = "1sw6b1jaddacfm4kvvhgxn743khmsi1c4b4f5mgvm3rabv0h473h";
};
nativeBuildInputs = [ installShellFiles pbr ];

View file

@ -1,13 +1,13 @@
{
"version": "13.12.4",
"repo_hash": "1jp97vwwfnh3iqkh58y0zqcx6lsvqcpnxy8ipd4j9hbmag1jr36i",
"version": "14.0.1",
"repo_hash": "185jzzlnghws958y15q7mzc7y42sxxq26p5i7j92bky9nkc1sa81",
"owner": "gitlab-org",
"repo": "gitlab",
"rev": "v13.12.4-ee",
"rev": "v14.0.1-ee",
"passthru": {
"GITALY_SERVER_VERSION": "13.12.4",
"GITLAB_PAGES_VERSION": "1.39.0",
"GITLAB_SHELL_VERSION": "13.18.0",
"GITLAB_WORKHORSE_VERSION": "13.12.4"
"GITALY_SERVER_VERSION": "14.0.1",
"GITLAB_PAGES_VERSION": "1.40.0",
"GITLAB_SHELL_VERSION": "13.19.0",
"GITLAB_WORKHORSE_VERSION": "14.0.1"
}
}

View file

@ -13,7 +13,7 @@ gem 'faraday', '~> 1.0'
gem 'rbtrace', require: false
# Labkit provides observability functionality
gem 'gitlab-labkit', '~> 0.16.2'
gem 'gitlab-labkit', '~> 0.17.1'
# Detects the open source license the repository includes
# This version needs to be in sync with GitLab CE/EE

View file

@ -65,13 +65,13 @@ GEM
gitlab-gollum-rugged_adapter (0.4.4.4.gitlab.1)
mime-types (>= 1.15)
rugged (~> 1.0)
gitlab-labkit (0.16.2)
gitlab-labkit (0.17.1)
actionpack (>= 5.0.0, < 7.0.0)
activesupport (>= 5.0.0, < 7.0.0)
grpc (~> 1.19)
jaeger-client (~> 1.1)
opentracing (~> 0.4)
pg_query (~> 1.3)
pg_query (~> 2.0)
redis (> 3.0.0, < 5.0.0)
gitlab-markup (1.7.1)
google-protobuf (3.14.0)
@ -104,11 +104,11 @@ GEM
mime-types-data (~> 3.2015)
mime-types-data (3.2020.1104)
mini_mime (1.0.2)
mini_portile2 (2.5.0)
mini_portile2 (2.5.1)
minitest (5.14.2)
msgpack (1.3.3)
multipart-post (2.1.1)
nokogiri (1.11.1)
nokogiri (1.11.5)
mini_portile2 (~> 2.5.0)
racc (~> 1.4)
nokogumbo (1.5.0)
@ -121,7 +121,8 @@ GEM
parallel (1.19.2)
parser (2.7.2.0)
ast (~> 2.4.1)
pg_query (1.3.0)
pg_query (2.0.3)
google-protobuf (~> 3.15.5)
proc_to_ast (0.1.0)
coderay
parser
@ -221,7 +222,7 @@ DEPENDENCIES
github-linguist (~> 7.12)
gitlab-gollum-lib (~> 4.2.7.10.gitlab.1)
gitlab-gollum-rugged_adapter (~> 0.4.4.4.gitlab.1)
gitlab-labkit (~> 0.16.2)
gitlab-labkit (~> 0.17.1)
gitlab-markup (~> 1.7.1)
google-protobuf (~> 3.14.0)
grpc (~> 1.30.2)

View file

@ -21,17 +21,17 @@ let
};
};
in buildGoModule rec {
version = "13.12.4";
version = "14.0.1";
pname = "gitaly";
src = fetchFromGitLab {
owner = "gitlab-org";
repo = "gitaly";
rev = "v${version}";
sha256 = "sha256-5I06tzeOfVdtblgqI7neKBgwzXuU9hI/0V3gYEPMJJ0=";
sha256 = "sha256-x9QTuEPLtiPJqk1UVwrlYvULIQ93TERSfslO2LB55cY=";
};
vendorSha256 = "sha256-drS0L0olEFHYJVC0VYwEZeNYa8fjwrfxlhrEQa4pqzY=";
vendorSha256 = "sha256-U962bMmXNnenCYkSdk0Uy7Bz+b9JGU5rJHfblZoyC/I=";
passthru = {
inherit rubyEnv;

View file

@ -269,10 +269,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0184rq6sal3xz4f0w5iaa5zf3q55i4dh0rlvr25l1g0s2imwr3fa";
sha256 = "1y1sk3xmxj14nzx7v2zgq4q4d5lh4v1pvhs03n03j3kp4fbrj469";
type = "gem";
};
version = "0.16.2";
version = "0.17.1";
};
gitlab-markup = {
groups = ["default"];
@ -441,10 +441,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1hdbpmamx8js53yk3h8cqy12kgv6ca06k0c9n3pxh6b6cjfs19x7";
sha256 = "0xg1x4708a4pn2wk8qs2d8kfzzdyv9kjjachg2f1phsx62ap2rx2";
type = "gem";
};
version = "2.5.0";
version = "2.5.1";
};
minitest = {
groups = ["default" "development" "test"];
@ -482,10 +482,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1ajwkqr28hwqbyl1l3czx4a34c88acxywyqp8cjyy0zgsd6sbhj2";
sha256 = "1i80ny61maqzqr1fq5wgpkijmh5j8abisrmhn16kv7mzmxqg5w0m";
type = "gem";
};
version = "1.11.1";
version = "1.11.5";
};
nokogumbo = {
dependencies = ["nokogiri"];
@ -549,14 +549,15 @@
version = "2.7.2.0";
};
pg_query = {
dependencies = ["google-protobuf"];
groups = ["default"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1i9l3y502ddm2lq3ajhxhqq17vs9hgxkxm443yw221ccibcfh6qf";
sha256 = "1mii63kgppy2zil2qn54c94z93b6ama6x7gq6rbv4xxlfk8ncrag";
type = "gem";
};
version = "1.3.0";
version = "2.0.3";
};
proc_to_ast = {
dependencies = ["coderay" "parser" "unparser"];

View file

@ -2,19 +2,19 @@
buildGoModule rec {
pname = "gitlab-shell";
version = "13.18.0";
version = "13.19.0";
src = fetchFromGitLab {
owner = "gitlab-org";
repo = "gitlab-shell";
rev = "v${version}";
sha256 = "sha256-TPe2quDg/ljI2v1HciDajosSPm4Z/iT2skeveNdrKdo=";
sha256 = "sha256-CmatKArkpDS3GGbIIkKjs4FwywLiU+lRL32GKEpOqZ0=";
};
buildInputs = [ ruby ];
patches = [ ./remove-hardcoded-locations.patch ];
vendorSha256 = "sha256-MvWpZ/Z9ieNE0+p975BG302BPzFbCZD3cACXMW5fiTQ=";
vendorSha256 = "sha256-+nUMxHWo/d/WrQ4LAEG2+ghtNBF9vcnSyg6Ki412rPA=";
postInstall = ''
cp -r "$NIX_BUILD_TOP/source"/bin/* $out/bin

View file

@ -5,7 +5,7 @@ in
buildGoModule rec {
pname = "gitlab-workhorse";
version = "13.12.4";
version = "14.0.1";
src = fetchFromGitLab {
owner = data.owner;
@ -16,7 +16,7 @@ buildGoModule rec {
sourceRoot = "source/workhorse";
vendorSha256 = "sha256-JJN1KqqbP4fIW/k6LebIaWdYOmIzHqxCDgOKrkbB7Nw=";
vendorSha256 = "sha256-gTObI0pmRUX6Eh5FVdt+5LbckyBuFq1Ly4oPZztazHQ=";
buildInputs = [ git ];
buildFlagsArray = "-ldflags=-X main.Version=${version}";
doCheck = false;

View file

@ -2,7 +2,7 @@
source 'https://rubygems.org'
gem 'rails', '~> 6.0.3.6'
gem 'rails', '~> 6.1.3.2'
gem 'bootsnap', '~> 1.4.6'
@ -129,7 +129,7 @@ gem 'fog-local', '~> 0.6'
gem 'fog-openstack', '~> 1.0'
gem 'fog-rackspace', '~> 0.1.1'
gem 'fog-aliyun', '~> 0.3'
gem 'gitlab-fog-azure-rm', '~> 1.0.1', require: false
gem 'gitlab-fog-azure-rm', '~> 1.1.1', require: false
# for Google storage
gem 'google-api-client', '~> 0.33'
@ -183,13 +183,8 @@ gem 'rack', '~> 2.2.3'
# https://github.com/sharpstone/rack-timeout/blob/master/README.md#rails-apps-manually
gem 'rack-timeout', '~> 0.5.1', require: 'rack/timeout/base'
group :unicorn do
gem 'unicorn', '~> 5.5'
gem 'unicorn-worker-killer', '~> 0.4.4'
end
group :puma do
gem 'puma', '~> 5.1.1', require: false
gem 'puma', '~> 5.3.1', require: false
gem 'puma_worker_killer', '~> 0.3.1', require: false
end
@ -254,7 +249,7 @@ gem 'flowdock', '~> 0.7'
gem 'slack-messenger', '~> 2.3.4'
# Hangouts Chat integration
gem 'hangouts-chat', '~> 0.0.5'
gem 'hangouts-chat', '~> 0.0.5', require: 'hangouts_chat'
# Asana integration
gem 'asana', '~> 0.10.3'
@ -306,15 +301,20 @@ gem 'gitlab-license', '~> 1.5'
gem 'rack-attack', '~> 6.3.0'
# Sentry integration
gem 'sentry-raven', '~> 3.0'
gem 'sentry-raven', '~> 3.1'
# PostgreSQL query parsing
gem 'pg_query', '~> 1.3.0'
#
# We need this fork until https://github.com/pganalyze/pg_query/pull/212
# and https://github.com/pganalyze/pg_query/pull/213 are
# released. gitlab-labkit will need to be updated to use the pg_query
# version.
gem 'gitlab-pg_query', '~> 2.0.4', require: 'pg_query'
gem 'premailer-rails', '~> 1.10.3'
# LabKit: Tracing and Correlation
gem 'gitlab-labkit', '~> 0.16.2'
gem 'gitlab-labkit', '~> 0.18.0'
# Thrift is a dependency of gitlab-labkit, we want a version higher than 0.14.0
# because of https://gitlab.com/gitlab-org/gitlab/-/issues/321900
gem 'thrift', '>= 0.14.0'
@ -341,12 +341,11 @@ group :metrics do
# Prometheus
gem 'prometheus-client-mmap', '~> 0.12.0'
gem 'raindrops', '~> 0.18'
end
group :development do
gem 'lefthook', '~> 0.7.0', require: false
gem 'solargraph', '~> 0.40.4', require: false
gem 'solargraph', '~> 0.42', require: false
gem 'letter_opener_web', '~> 1.4.0'
@ -403,7 +402,7 @@ group :development, :test do
end
group :development, :test, :danger do
gem 'gitlab-dangerfiles', '~> 2.0.0', require: false
gem 'gitlab-dangerfiles', '~> 2.1.2', require: false
end
group :development, :test, :coverage do
@ -481,18 +480,21 @@ end
gem 'spamcheck', '~> 0.1.0'
# Gitaly GRPC protocol definitions
gem 'gitaly', '~> 13.12.0.pre.rc1'
gem 'gitaly', '~> 14.0.0.pre.rc2'
# KAS GRPC protocol definitions
gem 'kas-grpc', '~> 0.0.2'
gem 'grpc', '~> 1.30.2'
gem 'google-protobuf', '~> 3.14.0'
gem 'google-protobuf', '~> 3.17.1'
gem 'toml-rb', '~> 1.0.0'
# Feature toggles
gem 'flipper', '~> 0.17.1'
gem 'flipper-active_record', '~> 0.17.1'
gem 'flipper-active_support_cache_store', '~> 0.17.1'
gem 'flipper', '~> 0.21.0'
gem 'flipper-active_record', '~> 0.21.0'
gem 'flipper-active_support_cache_store', '~> 0.21.0'
gem 'unleash', '~> 0.1.5'
gem 'gitlab-experiment', '~> 0.5.4'

View file

@ -5,64 +5,68 @@ GEM
abstract_type (0.0.7)
acme-client (2.0.6)
faraday (>= 0.17, < 2.0.0)
actioncable (6.0.3.6)
actionpack (= 6.0.3.6)
actioncable (6.1.3.2)
actionpack (= 6.1.3.2)
activesupport (= 6.1.3.2)
nio4r (~> 2.0)
websocket-driver (>= 0.6.1)
actionmailbox (6.0.3.6)
actionpack (= 6.0.3.6)
activejob (= 6.0.3.6)
activerecord (= 6.0.3.6)
activestorage (= 6.0.3.6)
activesupport (= 6.0.3.6)
actionmailbox (6.1.3.2)
actionpack (= 6.1.3.2)
activejob (= 6.1.3.2)
activerecord (= 6.1.3.2)
activestorage (= 6.1.3.2)
activesupport (= 6.1.3.2)
mail (>= 2.7.1)
actionmailer (6.0.3.6)
actionpack (= 6.0.3.6)
actionview (= 6.0.3.6)
activejob (= 6.0.3.6)
actionmailer (6.1.3.2)
actionpack (= 6.1.3.2)
actionview (= 6.1.3.2)
activejob (= 6.1.3.2)
activesupport (= 6.1.3.2)
mail (~> 2.5, >= 2.5.4)
rails-dom-testing (~> 2.0)
actionpack (6.0.3.6)
actionview (= 6.0.3.6)
activesupport (= 6.0.3.6)
rack (~> 2.0, >= 2.0.8)
actionpack (6.1.3.2)
actionview (= 6.1.3.2)
activesupport (= 6.1.3.2)
rack (~> 2.0, >= 2.0.9)
rack-test (>= 0.6.3)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.0, >= 1.2.0)
actiontext (6.0.3.6)
actionpack (= 6.0.3.6)
activerecord (= 6.0.3.6)
activestorage (= 6.0.3.6)
activesupport (= 6.0.3.6)
actiontext (6.1.3.2)
actionpack (= 6.1.3.2)
activerecord (= 6.1.3.2)
activestorage (= 6.1.3.2)
activesupport (= 6.1.3.2)
nokogiri (>= 1.8.5)
actionview (6.0.3.6)
activesupport (= 6.0.3.6)
actionview (6.1.3.2)
activesupport (= 6.1.3.2)
builder (~> 3.1)
erubi (~> 1.4)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.1, >= 1.2.0)
activejob (6.0.3.6)
activesupport (= 6.0.3.6)
activejob (6.1.3.2)
activesupport (= 6.1.3.2)
globalid (>= 0.3.6)
activemodel (6.0.3.6)
activesupport (= 6.0.3.6)
activerecord (6.0.3.6)
activemodel (= 6.0.3.6)
activesupport (= 6.0.3.6)
activemodel (6.1.3.2)
activesupport (= 6.1.3.2)
activerecord (6.1.3.2)
activemodel (= 6.1.3.2)
activesupport (= 6.1.3.2)
activerecord-explain-analyze (0.1.0)
activerecord (>= 4)
pg
activestorage (6.0.3.6)
actionpack (= 6.0.3.6)
activejob (= 6.0.3.6)
activerecord (= 6.0.3.6)
activestorage (6.1.3.2)
actionpack (= 6.1.3.2)
activejob (= 6.1.3.2)
activerecord (= 6.1.3.2)
activesupport (= 6.1.3.2)
marcel (~> 1.0.0)
activesupport (6.0.3.6)
mini_mime (~> 1.0.2)
activesupport (6.1.3.2)
concurrent-ruby (~> 1.0, >= 1.0.2)
i18n (>= 0.7, < 2)
minitest (~> 5.1)
tzinfo (~> 1.1)
zeitwerk (~> 2.2, >= 2.2.2)
i18n (>= 1.6, < 2)
minitest (>= 5.1)
tzinfo (~> 2.0)
zeitwerk (~> 2.3)
acts-as-taggable-on (7.0.0)
activerecord (>= 5.0, < 6.2)
adamantium (0.2.0)
@ -126,7 +130,7 @@ GEM
net-http-persistent (~> 4.0)
nokogiri (~> 1.11.0.rc2)
babosa (1.0.4)
backport (1.1.2)
backport (1.2.0)
base32 (0.3.2)
batch-loader (2.0.1)
bcrypt (3.1.16)
@ -341,13 +345,24 @@ GEM
factory_bot_rails (6.1.0)
factory_bot (~> 6.1.0)
railties (>= 5.0.0)
faraday (1.0.1)
faraday (1.4.2)
faraday-em_http (~> 1.0)
faraday-em_synchrony (~> 1.0)
faraday-excon (~> 1.1)
faraday-net_http (~> 1.0)
faraday-net_http_persistent (~> 1.1)
multipart-post (>= 1.2, < 3)
ruby2_keywords (>= 0.0.4)
faraday-cookie_jar (0.0.7)
faraday (>= 0.8.0)
http-cookie (~> 1.0.0)
faraday-em_http (1.0.0)
faraday-em_synchrony (1.0.0)
faraday-excon (1.1.0)
faraday-http-cache (2.2.0)
faraday (>= 0.8)
faraday-net_http (1.0.1)
faraday-net_http_persistent (1.1.0)
faraday_middleware (1.0.0)
faraday (~> 1.0)
faraday_middleware-aws-sigv4 (0.3.0)
@ -359,19 +374,19 @@ GEM
fast_blank (1.0.0)
fast_gettext (1.6.0)
ffaker (2.10.0)
ffi (1.13.1)
ffi (1.15.1)
ffi-compiler (1.0.1)
ffi (>= 1.0.0)
rake
ffi-yajl (2.3.4)
libyajl2 (~> 1.2)
flipper (0.17.1)
flipper-active_record (0.17.1)
activerecord (>= 4.2, < 7)
flipper (~> 0.17.1)
flipper-active_support_cache_store (0.17.1)
activesupport (>= 4.2, < 7)
flipper (~> 0.17.1)
flipper (0.21.0)
flipper-active_record (0.21.0)
activerecord (>= 5.0, < 7)
flipper (~> 0.21.0)
flipper-active_support_cache_store (0.21.0)
activesupport (>= 5.0, < 7)
flipper (~> 0.21.0)
flowdock (0.7.1)
httparty (~> 0.7)
multi_json
@ -432,7 +447,7 @@ GEM
rails (>= 3.2.0)
git (1.7.0)
rchardet (~> 1.8)
gitaly (13.12.0.pre.rc1)
gitaly (14.0.0.pre.rc2)
grpc (~> 1.0)
github-markup (1.7.0)
gitlab (4.16.1)
@ -440,13 +455,13 @@ GEM
terminal-table (~> 1.5, >= 1.5.1)
gitlab-chronic (0.10.5)
numerizer (~> 0.2)
gitlab-dangerfiles (2.0.0)
gitlab-dangerfiles (2.1.2)
danger-gitlab
gitlab-experiment (0.5.4)
activesupport (>= 3.0)
request_store (>= 1.0)
scientist (~> 1.6, >= 1.6.0)
gitlab-fog-azure-rm (1.0.1)
gitlab-fog-azure-rm (1.1.1)
azure-storage-blob (~> 2.0)
azure-storage-common (~> 2.0)
fog-core (= 2.1.0)
@ -460,13 +475,13 @@ GEM
fog-xml (~> 0.1.0)
google-api-client (>= 0.44.2, < 0.51)
google-cloud-env (~> 1.2)
gitlab-labkit (0.16.2)
gitlab-labkit (0.18.0)
actionpack (>= 5.0.0, < 7.0.0)
activesupport (>= 5.0.0, < 7.0.0)
gitlab-pg_query (~> 2.0)
grpc (~> 1.19)
jaeger-client (~> 1.1)
opentracing (~> 0.4)
pg_query (~> 1.3)
redis (> 3.0.0, < 5.0.0)
gitlab-license (1.5.0)
gitlab-mail_room (0.0.9)
@ -476,6 +491,8 @@ GEM
addressable (~> 2.7)
omniauth (~> 1.9)
openid_connect (~> 1.2)
gitlab-pg_query (2.0.4)
google-protobuf (>= 3.17.1)
gitlab-sidekiq-fetcher (0.5.6)
sidekiq (~> 5)
gitlab-styles (6.2.0)
@ -509,7 +526,7 @@ GEM
signet (~> 0.12)
google-cloud-env (1.4.0)
faraday (>= 0.17.3, < 2.0)
google-protobuf (3.14.0)
google-protobuf (3.17.1)
googleapis-common-protos-types (1.0.6)
google-protobuf (~> 3.14)
googleauth (0.14.0)
@ -615,7 +632,7 @@ GEM
http-cookie (1.0.3)
domain_name (~> 0.5)
http-form_data (2.3.0)
http-parser (1.2.1)
http-parser (1.2.3)
ffi-compiler (>= 1.0, < 2.0)
httparty (0.16.4)
mime-types (~> 3.0)
@ -669,7 +686,8 @@ GEM
activerecord
kaminari-core (= 1.2.1)
kaminari-core (1.2.1)
kgio (2.11.3)
kas-grpc (0.0.2)
grpc (~> 1.0)
knapsack (1.21.1)
rake
kramdown (2.3.1)
@ -683,7 +701,7 @@ GEM
rest-client (~> 2.0)
launchy (2.5.0)
addressable (~> 2.7)
lefthook (0.7.2)
lefthook (0.7.5)
letter_opener (1.7.0)
launchy (~> 2.2)
letter_opener_web (1.4.0)
@ -735,7 +753,7 @@ GEM
mime-types-data (3.2020.0512)
mini_histogram (0.3.1)
mini_magick (4.10.1)
mini_mime (1.1.0)
mini_mime (1.0.2)
mini_portile2 (2.5.0)
minitest (5.11.3)
mixlib-cli (2.1.8)
@ -896,7 +914,6 @@ GEM
peek (1.1.0)
railties (>= 4.0.0)
pg (1.2.3)
pg_query (1.3.0)
plist (3.6.0)
png_quantizator (0.2.1)
po_to_json (1.0.1)
@ -922,12 +939,12 @@ GEM
pry (~> 0.13.0)
pry-rails (0.3.9)
pry (>= 0.10.4)
pry-shell (0.4.0)
pry-shell (0.4.1)
pry (~> 0.13.0)
tty-markdown
tty-prompt
public_suffix (4.0.6)
puma (5.1.1)
puma (5.3.2)
nio4r (~> 2.0)
puma_worker_killer (0.3.1)
get_process_mem (~> 0.2)
@ -955,20 +972,20 @@ GEM
rack-test (1.1.0)
rack (>= 1.0, < 3)
rack-timeout (0.5.2)
rails (6.0.3.6)
actioncable (= 6.0.3.6)
actionmailbox (= 6.0.3.6)
actionmailer (= 6.0.3.6)
actionpack (= 6.0.3.6)
actiontext (= 6.0.3.6)
actionview (= 6.0.3.6)
activejob (= 6.0.3.6)
activemodel (= 6.0.3.6)
activerecord (= 6.0.3.6)
activestorage (= 6.0.3.6)
activesupport (= 6.0.3.6)
bundler (>= 1.3.0)
railties (= 6.0.3.6)
rails (6.1.3.2)
actioncable (= 6.1.3.2)
actionmailbox (= 6.1.3.2)
actionmailer (= 6.1.3.2)
actionpack (= 6.1.3.2)
actiontext (= 6.1.3.2)
actionview (= 6.1.3.2)
activejob (= 6.1.3.2)
activemodel (= 6.1.3.2)
activerecord (= 6.1.3.2)
activestorage (= 6.1.3.2)
activesupport (= 6.1.3.2)
bundler (>= 1.15.0)
railties (= 6.1.3.2)
sprockets-rails (>= 2.0.0)
rails-controller-testing (1.0.5)
actionpack (>= 5.0.1.rc1)
@ -982,14 +999,13 @@ GEM
rails-i18n (6.0.0)
i18n (>= 0.7, < 2)
railties (>= 6.0.0, < 7)
railties (6.0.3.6)
actionpack (= 6.0.3.6)
activesupport (= 6.0.3.6)
railties (6.1.3.2)
actionpack (= 6.1.3.2)
activesupport (= 6.1.3.2)
method_source
rake (>= 0.8.7)
thor (>= 0.20.3, < 2.0)
thor (~> 1.0)
rainbow (3.0.0)
raindrops (0.19.1)
rake (13.0.3)
rb-fsevent (0.10.4)
rb-inotify (0.10.1)
@ -1123,7 +1139,7 @@ GEM
nokogiri (>= 1.10.5)
rexml
ruby-statistics (2.1.2)
ruby2_keywords (0.0.2)
ruby2_keywords (0.0.4)
ruby_parser (3.15.0)
sexp_processor (~> 4.9)
rubyntlm (0.6.2)
@ -1162,7 +1178,7 @@ GEM
selenium-webdriver (3.142.7)
childprocess (>= 0.5, < 4.0)
rubyzip (>= 1.2.2)
sentry-raven (3.0.4)
sentry-raven (3.1.2)
faraday (>= 1.0)
settingslogic (2.0.9)
sexp_processor (4.15.1)
@ -1193,10 +1209,11 @@ GEM
slack-messenger (2.3.4)
snowplow-tracker (0.6.1)
contracts (~> 0.7, <= 0.11)
solargraph (0.40.4)
backport (~> 1.1)
solargraph (0.42.3)
backport (~> 1.2)
benchmark
bundler (>= 1.17.2)
diff-lcs (~> 1.4)
e2mmap
jaro_winkler (~> 1.5)
kramdown (~> 2.3)
@ -1248,8 +1265,8 @@ GEM
terser (1.0.2)
execjs (>= 0.3.0, < 3)
test-prof (0.12.0)
test_file_finder (0.1.3)
faraday (~> 1.0.1)
test_file_finder (0.1.4)
faraday (~> 1.0)
text (1.3.1)
thin (1.8.0)
daemons (~> 1.0, >= 1.0.9)
@ -1298,8 +1315,8 @@ GEM
tty-screen (~> 0.8)
wisper (~> 2.0)
tty-screen (0.8.1)
tzinfo (1.2.9)
thread_safe (~> 0.1)
tzinfo (2.0.4)
concurrent-ruby (~> 1.0)
u2f (0.2.1)
uber (0.1.0)
unf (0.1.4)
@ -1307,12 +1324,6 @@ GEM
unf_ext (0.0.7.7)
unicode-display_width (1.7.0)
unicode_utils (1.4.0)
unicorn (5.5.5)
kgio (~> 2.6)
raindrops (~> 0.7)
unicorn-worker-killer (0.4.4)
get_process_mem (~> 0)
unicorn (>= 4, < 6)
uniform_notifier (1.13.0)
unleash (0.1.5)
murmurhash3 (~> 0.1.6)
@ -1449,9 +1460,9 @@ DEPENDENCIES
faraday_middleware-aws-sigv4 (~> 0.3.0)
fast_blank
ffaker (~> 2.10)
flipper (~> 0.17.1)
flipper-active_record (~> 0.17.1)
flipper-active_support_cache_store (~> 0.17.1)
flipper (~> 0.21.0)
flipper-active_record (~> 0.21.0)
flipper-active_support_cache_store (~> 0.21.0)
flowdock (~> 0.7)
fog-aliyun (~> 0.3)
fog-aws (~> 3.9)
@ -1465,26 +1476,27 @@ DEPENDENCIES
gettext (~> 3.3)
gettext_i18n_rails (~> 1.8.0)
gettext_i18n_rails_js (~> 1.3)
gitaly (~> 13.12.0.pre.rc1)
gitaly (~> 14.0.0.pre.rc2)
github-markup (~> 1.7.0)
gitlab-chronic (~> 0.10.5)
gitlab-dangerfiles (~> 2.0.0)
gitlab-dangerfiles (~> 2.1.2)
gitlab-experiment (~> 0.5.4)
gitlab-fog-azure-rm (~> 1.0.1)
gitlab-fog-azure-rm (~> 1.1.1)
gitlab-fog-google (~> 1.13)
gitlab-labkit (~> 0.16.2)
gitlab-labkit (~> 0.18.0)
gitlab-license (~> 1.5)
gitlab-mail_room (~> 0.0.9)
gitlab-markup (~> 1.7.1)
gitlab-net-dns (~> 0.9.1)
gitlab-omniauth-openid-connect (~> 0.4.0)
gitlab-pg_query (~> 2.0.4)
gitlab-sidekiq-fetcher (= 0.5.6)
gitlab-styles (~> 6.2.0)
gitlab_chronic_duration (~> 0.10.6.2)
gitlab_omniauth-ldap (~> 2.1.1)
gon (~> 6.4.0)
google-api-client (~> 0.33)
google-protobuf (~> 3.14.0)
google-protobuf (~> 3.17.1)
gpgme (~> 2.0.19)
grape (~> 1.5.2)
grape-entity (~> 0.9.0)
@ -1515,6 +1527,7 @@ DEPENDENCIES
json_schemer (~> 0.2.12)
jwt (~> 2.1.0)
kaminari (~> 1.0)
kas-grpc (~> 0.0.2)
knapsack (~> 1.21.1)
kramdown (~> 2.3.1)
kubeclient (~> 4.9.1)
@ -1564,14 +1577,13 @@ DEPENDENCIES
parslet (~> 1.8)
peek (~> 1.1)
pg (~> 1.1)
pg_query (~> 1.3.0)
png_quantizator (~> 0.2.1)
premailer-rails (~> 1.10.3)
prometheus-client-mmap (~> 0.12.0)
pry-byebug
pry-rails (~> 0.3.9)
pry-shell (~> 0.4.0)
puma (~> 5.1.1)
puma (~> 5.3.1)
puma_worker_killer (~> 0.3.1)
rack (~> 2.2.3)
rack-attack (~> 6.3.0)
@ -1579,11 +1591,10 @@ DEPENDENCIES
rack-oauth2 (~> 1.16.0)
rack-proxy (~> 0.6.0)
rack-timeout (~> 0.5.1)
rails (~> 6.0.3.6)
rails (~> 6.1.3.2)
rails-controller-testing
rails-i18n (~> 6.0)
rainbow (~> 3.0)
raindrops (~> 0.18)
rblineprof (~> 0.3.6)
rbtrace (~> 0.4)
rdoc (~> 6.1.2)
@ -1615,7 +1626,7 @@ DEPENDENCIES
sassc-rails (~> 2.1.0)
seed-fu (~> 2.3.7)
selenium-webdriver (~> 3.142)
sentry-raven (~> 3.0)
sentry-raven (~> 3.1)
settingslogic (~> 2.0.9)
shoulda-matchers (~> 4.0.1)
sidekiq (~> 5.2.7)
@ -1625,7 +1636,7 @@ DEPENDENCIES
simplecov-cobertura (~> 1.3.1)
slack-messenger (~> 2.3.4)
snowplow-tracker (~> 0.6.1)
solargraph (~> 0.40.4)
solargraph (~> 0.42)
spamcheck (~> 0.1.0)
spring (~> 2.1.0)
spring-commands-rspec (~> 1.0.4)
@ -1644,8 +1655,6 @@ DEPENDENCIES
truncato (~> 0.7.11)
u2f (~> 0.2.1)
unf (~> 0.1.4)
unicorn (~> 5.5)
unicorn-worker-killer (~> 0.4.4)
unleash (~> 0.1.5)
valid_email (~> 0.1)
validates_hostname (~> 1.0.11)

View file

@ -21,15 +21,15 @@
version = "2.0.6";
};
actioncable = {
dependencies = ["actionpack" "nio4r" "websocket-driver"];
dependencies = ["actionpack" "activesupport" "nio4r" "websocket-driver"];
groups = ["default" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1543p34bfq7s4l83m0f84f0z5yr1ip1miyimv4gh2k136pgk23r9";
sha256 = "15r6ab17iwhhq92by4ah9z4wwvjbr07qn16x8pn2ypgqwvfy74h7";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
actionmailbox = {
dependencies = ["actionpack" "activejob" "activerecord" "activestorage" "activesupport" "mail"];
@ -37,21 +37,21 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0dnx7mhhzwr45lsxkd7y9ld9vazcadxzs7813jp19hk3wra4jvs3";
sha256 = "1q1r3x9fbq5wlgn4xhqw48la09q7f97zna7ld5fglk3jpmh973x5";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
actionmailer = {
dependencies = ["actionpack" "actionview" "activejob" "mail" "rails-dom-testing"];
dependencies = ["actionpack" "actionview" "activejob" "activesupport" "mail" "rails-dom-testing"];
groups = ["default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1cnsv97qx7708wg00lxcl7a6h8amxn85h40s8ngszhknh8wpwj3f";
sha256 = "1nqdaykzgib8fsldkxdkw0w44jzz4grvb028crzg0qpwvv03g2wp";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
actionpack = {
dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"];
@ -59,10 +59,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "10rn7gmnnwpm593xv6lcf4qa72wmlbyjg4zmdc3lpb5596whd3yz";
sha256 = "1wdgv5llgbl4nayx5j78lfvhhjssrzfmypb45mjy37mgm8z5l5m5";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
actiontext = {
dependencies = ["actionpack" "activerecord" "activestorage" "activesupport" "nokogiri"];
@ -70,10 +70,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "13i7x4zp991sq3zsagpzs01bhm81zgy63lamqrpsp68nv584n5sx";
sha256 = "1zfrkcnp9wy1dm4b6iqf29858dp04a62asfmldainqmv4a7931q7";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
actionview = {
dependencies = ["activesupport" "builder" "erubi" "rails-dom-testing" "rails-html-sanitizer"];
@ -81,10 +81,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0ikqpxsrsb7xmq6ds5iq22nj2j3ai16z8z2j5r6lk8pzbi0wwsz5";
sha256 = "1r6db2g3fsrca1hp9kbyvjx9psipsxw0g306qharkcblxl8h1ysn";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
activejob = {
dependencies = ["activesupport" "globalid"];
@ -92,10 +92,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1sy9kyl7famlwrdw7gz6sy7azhkcsn1mjja44s44libcz3fl7jpc";
sha256 = "0p80rbahcxhxlkxgf4bh580hbifn9q4gr5g9fy8fd0z5g6gr9xxq";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
activemodel = {
dependencies = ["activesupport"];
@ -103,10 +103,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "15kq8ghmkav331dz1pak1bc8q1v5xajw6pkj20hqr8m5zl6czcld";
sha256 = "1gpd3hh4ryyr84drj6m0b5sy6929nyf50bfgksw1hpc594542nal";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
activerecord = {
dependencies = ["activemodel" "activesupport"];
@ -114,10 +114,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1a3hc2rammy4mfrjwzc9rsn497yq9xc0x89c00niiq45q3qs44vz";
sha256 = "0fg58qma2zgrz0gr61p61qcz8c3h88fd5lbdrkpkm96aq5shwh68";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
activerecord-explain-analyze = {
dependencies = ["activerecord" "pg"];
@ -131,15 +131,15 @@
version = "0.1.0";
};
activestorage = {
dependencies = ["actionpack" "activejob" "activerecord" "marcel"];
dependencies = ["actionpack" "activejob" "activerecord" "activesupport" "marcel" "mini_mime"];
groups = ["default" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1jwdfqn01g7v7ssrrf2q2pvc8k6rdqccp26qkyfxiraaz9d1la62";
sha256 = "0sbpkk3r8qi47bd0ilznq4gpfyfwm2bwvxqb5z0wc75h3zj1jhqg";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
activesupport = {
dependencies = ["concurrent-ruby" "i18n" "minitest" "tzinfo" "zeitwerk"];
@ -147,10 +147,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0sls37x9pd2zmipn14c46gcjbfzlg269r413cvm0d58595qkiv7z";
sha256 = "1csxddyhl6k773ycxjvmyshyr4g9jb1icbs3pnm7crnavqs4h1yr";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
acts-as-taggable-on = {
dependencies = ["activerecord"];
@ -465,10 +465,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1xmjljpyx5ly078gi0lmmgkv4y0msxxa3hmv74bzxzp3l8qbn5vc";
sha256 = "0xbzzjrgah0f8ifgd449kak2vyf30micpz6x2g82aipfv7ypsb4i";
type = "gem";
};
version = "1.1.2";
version = "1.2.0";
};
base32 = {
groups = ["default"];
@ -1509,15 +1509,15 @@
version = "6.1.0";
};
faraday = {
dependencies = ["multipart-post"];
groups = ["default" "development"];
dependencies = ["faraday-em_http" "faraday-em_synchrony" "faraday-excon" "faraday-net_http" "faraday-net_http_persistent" "multipart-post" "ruby2_keywords"];
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0wwks9652xwgjm7yszcq5xr960pjypc07ivwzbjzpvy9zh2fw6iq";
sha256 = "07mhk70gv453pg38md346470hknyhipdqppnplq706ll3k3lzb7v";
type = "gem";
};
version = "1.0.1";
version = "1.4.2";
};
faraday-cookie_jar = {
dependencies = ["faraday" "http-cookie"];
@ -1530,6 +1530,36 @@
};
version = "0.0.7";
};
faraday-em_http = {
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "12cnqpbak4vhikrh2cdn94assh3yxza8rq2p9w2j34bqg5q4qgbs";
type = "gem";
};
version = "1.0.0";
};
faraday-em_synchrony = {
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1vgrbhkp83sngv6k4mii9f2s9v5lmp693hylfxp2ssfc60fas3a6";
type = "gem";
};
version = "1.0.0";
};
faraday-excon = {
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0h09wkb0k0bhm6dqsd47ac601qiaah8qdzjh8gvxfd376x1chmdh";
type = "gem";
};
version = "1.1.0";
};
faraday-http-cache = {
dependencies = ["faraday"];
groups = ["default" "development"];
@ -1541,6 +1571,26 @@
};
version = "2.2.0";
};
faraday-net_http = {
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1fi8sda5hc54v1w3mqfl5yz09nhx35kglyx72w7b8xxvdr0cwi9j";
type = "gem";
};
version = "1.0.1";
};
faraday-net_http_persistent = {
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0l2c835wl7gv34xp49fhd1bl4czkpw2g3ahqsak2251iqv5589ka";
type = "gem";
};
version = "1.1.0";
};
faraday_middleware = {
dependencies = ["faraday"];
groups = ["default"];
@ -1605,14 +1655,14 @@
version = "2.10.0";
};
ffi = {
groups = ["default" "development" "kerberos" "puma" "test" "unicorn"];
groups = ["default" "development" "kerberos" "puma" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "12lpwaw82bb0rm9f52v1498bpba8aj2l2q359mkwbxsswhpga5af";
sha256 = "15nn2v70rql15vb0pm9cg0f3xsaslwjkv6xgz0k5jh48idmfw9fi";
type = "gem";
};
version = "1.13.1";
version = "1.15.1";
};
ffi-compiler = {
dependencies = ["ffi" "rake"];
@ -1641,10 +1691,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "01gbn1qmcvn49gjcbvd5fga57qc8l3915kb04ikkffvb6n09q7f7";
sha256 = "00qjmmy4lx6cbyndpqgj330ys6pxi3chhqfaybd5c7m9y0kr6ck9";
type = "gem";
};
version = "0.17.1";
version = "0.21.0";
};
flipper-active_record = {
dependencies = ["activerecord" "flipper"];
@ -1652,10 +1702,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "154q9xajqs64gxa9fv4hwpad44x3rmwgpldrb941i8wi37dpzskg";
sha256 = "06j6fg8qdxklml0qvindy8dghx3ilq2k3x5rwdxlr8vjl5hljqm5";
type = "gem";
};
version = "0.17.1";
version = "0.21.0";
};
flipper-active_support_cache_store = {
dependencies = ["activesupport" "flipper"];
@ -1663,10 +1713,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0mkbyn3mx3f411x4z1l1djc9vix3wrfzd5rhrmxb83iqp60r42hg";
sha256 = "00rb87d1f7wl1n3idv8bvjv45v3j1n1j5wm2vswisayv7z8wqp6r";
type = "gem";
};
version = "0.17.1";
version = "0.21.0";
};
flowdock = {
dependencies = ["httparty" "multi_json"];
@ -1891,10 +1941,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1l0zq04lhqbzg0grca1c0p3a5gb9jdlhy41dhlgnrsaf7k6xads6";
sha256 = "1wpp1zdwjmglsycliag6v9844jnhpvkblry9i14a16gspqdsfam4";
type = "gem";
};
version = "13.12.0.pre.rc1";
version = "14.0.0.pre.rc2";
};
github-markup = {
groups = ["default"];
@ -1934,10 +1984,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0h40p9v034jczialkh4brrv7karrx6a95mhrfpfs17p800lighzz";
sha256 = "09vcxzbsvgis47ifgd82rjn12587qcw6q2q0n0y3cg5snag6fqdb";
type = "gem";
};
version = "2.0.0";
version = "2.1.2";
};
gitlab-experiment = {
dependencies = ["activesupport" "request_store" "scientist"];
@ -1956,10 +2006,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "05yc5fp45v7y6h838zrj4666ar1ddhn8i5bbdxm8j73yrn2kjnal";
sha256 = "1k5f3vyy2jqv3zdkdqal6sgn447zakz8xcc04432qd806s7g9i89";
type = "gem";
};
version = "1.0.1";
version = "1.1.1";
};
gitlab-fog-google = {
dependencies = ["addressable" "fog-core" "fog-json" "fog-xml" "google-api-client" "google-cloud-env"];
@ -1973,15 +2023,15 @@
version = "1.13.0";
};
gitlab-labkit = {
dependencies = ["actionpack" "activesupport" "grpc" "jaeger-client" "opentracing" "pg_query" "redis"];
dependencies = ["actionpack" "activesupport" "gitlab-pg_query" "grpc" "jaeger-client" "opentracing" "redis"];
groups = ["default"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0184rq6sal3xz4f0w5iaa5zf3q55i4dh0rlvr25l1g0s2imwr3fa";
sha256 = "1d18fx54dq2a2ngdix3dchbk4xpxfpqz1rkr2hi1kvi6idq4k6qp";
type = "gem";
};
version = "0.16.2";
version = "0.18.0";
};
gitlab-license = {
groups = ["default"];
@ -2034,6 +2084,17 @@
};
version = "0.4.0";
};
gitlab-pg_query = {
dependencies = ["google-protobuf"];
groups = ["default"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "17whjbrmyh1wn3badapa1xhdcjpdrxgn7vz705fpi1p9r8q0a2vj";
type = "gem";
};
version = "2.0.4";
};
gitlab-sidekiq-fetcher = {
dependencies = ["sidekiq"];
groups = ["default"];
@ -2127,10 +2188,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0pbm2kjhxvazx9d5c071bxcjx5cbip6d2y36dii2a4558nqjd12p";
sha256 = "00jm6b5gpzj99cngha3g70s0xnr0c58si7kx3g7jiaj9ipp26qj5";
type = "gem";
};
version = "3.14.0";
version = "3.17.1";
};
googleapis-common-protos-types = {
dependencies = ["google-protobuf"];
@ -2503,10 +2564,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "10wz818i7dq5zkcll0yf7pbjz1zqvs7mgh3xg3x6www2f2ccwxqj";
sha256 = "18qqvckvqjffh88hfib6c8pl9qwk9gp89w89hl3f2s1x8hgyqka1";
type = "gem";
};
version = "1.2.1";
version = "1.2.3";
};
httparty = {
dependencies = ["mime-types" "multi_xml"];
@ -2740,15 +2801,16 @@
};
version = "1.2.1";
};
kgio = {
groups = ["default" "unicorn"];
kas-grpc = {
dependencies = ["grpc"];
groups = ["default"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0ai6bzlvxbzpdl466p1qi4dlhx8ri2wcrp6x1l19y3yfs3a29rng";
sha256 = "05lsvxb6mpx5h3zmp3pgs3cp52r1kb3a8yr9j7s3ksajb58zf7qi";
type = "gem";
};
version = "2.11.3";
version = "0.0.2";
};
knapsack = {
dependencies = ["rake"];
@ -2810,10 +2872,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "17bv6zfdzwbbh8n0iw8zgjngsvyp2imrrfshj62yrlxpka9ka0z3";
sha256 = "07r76qlzxcz9y4dmkqf8k4khkfq7s2v22dcq6b0w0v4cfiwqva3h";
type = "gem";
};
version = "0.7.2";
version = "0.7.5";
};
letter_opener = {
dependencies = ["launchy"];
@ -3065,10 +3127,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0kb7jq3wjgckmkzna799y5qmvn6vg52878bkgw35qay6lflcrwih";
sha256 = "1axm0rxyx3ss93wbmfkm78a6x03l8y4qy60rhkkiq0aza0vwq3ha";
type = "gem";
};
version = "1.1.0";
version = "1.0.2";
};
mini_portile2 = {
groups = ["default" "development" "test"];
@ -3810,16 +3872,6 @@
};
version = "1.2.3";
};
pg_query = {
groups = ["default"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1i9l3y502ddm2lq3ajhxhqq17vs9hgxkxm443yw221ccibcfh6qf";
type = "gem";
};
version = "1.3.0";
};
plist = {
groups = ["default"];
platforms = [];
@ -3947,10 +3999,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1315j8klxd404xxmcw1c6rlx7j445dzx62q5sggzvd59sl1amkf5";
sha256 = "1wyx2rz58lfys1h62h6inz7ggq8xckqyfxndk8jq2cbkkdi2n6d7";
type = "gem";
};
version = "0.4.0";
version = "0.4.1";
};
public_suffix = {
groups = ["default" "development" "test"];
@ -3968,10 +4020,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "13640p5fk19705ygp8j6p07lccag3d80bx8bmjgpd5zsxxsdc50b";
sha256 = "0lmaq05a257m9588a81wql3a5p039f221f0dmq57bm2qjwxydjmj";
type = "gem";
};
version = "5.1.1";
version = "5.3.2";
};
puma_worker_killer = {
dependencies = ["get_process_mem" "puma"];
@ -4117,10 +4169,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "01mwx4q9yz792dbi61j378iz6p7q63sxj3267jwwccjqmn6hf2kr";
sha256 = "0flnpli87b9j0zvb3c4l5addjbznbpkbmp1wzfjc1gh8qxlhcs1n";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
rails-controller-testing = {
dependencies = ["actionpack" "actionview" "activesupport"];
@ -4172,10 +4224,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0i50vbscdk6wqxd2p0xwsyi07lwda612njqk8pn1f56snz5z0dcr";
sha256 = "17r1pr8d467vh3zkciw4wmrcixj9zjrvd11nxn2z091bkzf66xq2";
type = "gem";
};
version = "6.0.3.6";
version = "6.1.3.2";
};
rainbow = {
groups = ["default" "development" "test"];
@ -4187,16 +4239,6 @@
};
version = "3.0.0";
};
raindrops = {
groups = ["metrics" "unicorn"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0zjja00mzgx2lddb7qrn14k7qrnwhf4bpmnlqj78m1pfxh7svync";
type = "gem";
};
version = "0.19.1";
};
rake = {
groups = ["default" "development" "test"];
platforms = [];
@ -4788,14 +4830,14 @@
version = "2.1.2";
};
ruby2_keywords = {
groups = ["default"];
groups = ["danger" "default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "17pcc0wgvh3ikrkr7bm3nx0qhyiqwidd13ij0fa50k7gsbnr2p0l";
sha256 = "15wfcqxyfgka05v2a7kpg64x57gl1y4xzvnc9lh60bqx5sf1iqrs";
type = "gem";
};
version = "0.0.2";
version = "0.0.4";
};
ruby_parser = {
dependencies = ["sexp_processor"];
@ -4983,10 +5025,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "17j4br2lpnd8066d50mkg9kwk9v70hn3zfiqkvysd8p9nffmqnm0";
sha256 = "0jin9x4f43lplglhr9smv2wxsjgmph2ygqlci4s0v0aq5493ng8h";
type = "gem";
};
version = "3.0.4";
version = "3.1.2";
};
settingslogic = {
groups = ["default"];
@ -5136,15 +5178,15 @@
version = "0.6.1";
};
solargraph = {
dependencies = ["backport" "benchmark" "e2mmap" "jaro_winkler" "kramdown" "kramdown-parser-gfm" "parser" "reverse_markdown" "rubocop" "thor" "tilt" "yard"];
dependencies = ["backport" "benchmark" "diff-lcs" "e2mmap" "jaro_winkler" "kramdown" "kramdown-parser-gfm" "parser" "reverse_markdown" "rubocop" "thor" "tilt" "yard"];
groups = ["development"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0xrad7amwf3nmdbif566qprk6xvwydxwz0s7arnzpvr01anc9gcl";
sha256 = "1xqmvwh6k638h6r13wsx1l0n0jvz07qys1lr7z8aaynscs0k6hyi";
type = "gem";
};
version = "0.40.4";
version = "0.42.3";
};
spamcheck = {
dependencies = ["grpc"];
@ -5373,10 +5415,10 @@
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0mbhiz7g7nd3v1ai4cgwzp2zr34k1h5am0vn9bny5qqn1408rlgi";
sha256 = "1kgak2xqyp2wf7y1c1q1dpxw56iq9mgpqjji6vfbjkxckqrxhdmw";
type = "gem";
};
version = "0.1.3";
version = "0.1.4";
};
text = {
groups = ["default" "development"];
@ -5608,15 +5650,15 @@
version = "0.8.1";
};
tzinfo = {
dependencies = ["thread_safe"];
dependencies = ["concurrent-ruby"];
groups = ["default" "development" "test"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0zwqqh6138s8b321fwvfbywxy00lw1azw4ql3zr0xh1aqxf8cnvj";
sha256 = "10qp5x7f9hvlc0psv9gsfbxg4a7s0485wsbq1kljkxq94in91l4z";
type = "gem";
};
version = "1.2.9";
version = "2.0.4";
};
u2f = {
groups = ["default"];
@ -5679,28 +5721,6 @@
};
version = "1.4.0";
};
unicorn = {
dependencies = ["kgio" "raindrops"];
groups = ["unicorn"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "1cznkq0agsm7s66nbqbalmq5nlc5cdpd2h88r8jdzsc7wsi5a098";
type = "gem";
};
version = "5.5.5";
};
unicorn-worker-killer = {
dependencies = ["get_process_mem" "unicorn"];
groups = ["unicorn"];
platforms = [];
source = {
remotes = ["https://rubygems.org"];
sha256 = "0rrdxpwdsapx47axjin8ymxb4f685qlpx8a26bql4ay1559c3gva";
type = "gem";
};
version = "0.4.4";
};
uniform_notifier = {
groups = ["default" "development" "test"];
platforms = [];

File diff suppressed because it is too large Load diff

View file

@ -17,6 +17,11 @@ stdenv.mkDerivation rec {
sha256 = "0ixl45g0m8b75gvbjm3gf5qg0yplspgs0xpm2619wn5sygc47sb1";
};
patches = [
# To fix the build with wlroots 0.14.0:
./wlroots-0_14.patch
];
nativeBuildInputs = [ meson ninja pkg-config wayland scdoc makeWrapper ];
buildInputs = [

View file

@ -0,0 +1,36 @@
From 9a4523d47efeafd674d419169fe161e5a3b31cb3 Mon Sep 17 00:00:00 2001
From: Jan Beich <jbeich@FreeBSD.org>
Date: Thu, 3 Jun 2021 17:53:11 +0000
Subject: [PATCH 1/3] view: chase swaywm/wlroots@9e58301df7f0
view.c:238:52: error: no member named 'subsurfaces' in 'struct wlr_surface'
wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces, parent_link) {
~~~~~~~~~~~~~~~~~ ^
/usr/include/wayland-util.h:443:30: note: expanded from macro 'wl_list_for_each'
for (pos = wl_container_of((head)->next, pos, member); \
^~~~
/usr/include/wayland-util.h:409:32: note: expanded from macro 'wl_container_of'
(__typeof__(sample))((char *)(ptr) - \
^~~
Based on https://github.com/swaywm/sway/commit/3162766eef14
---
view.c | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/view.c b/view.c
index b9ba9c2..3f3b0ed 100644
--- a/view.c
+++ b/view.c
@@ -235,7 +235,10 @@ view_map(struct cg_view *view, struct wlr_surface *surface)
view->wlr_surface = surface;
struct wlr_subsurface *subsurface;
- wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces, parent_link) {
+ wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces_below, parent_link) {
+ subsurface_create(view, subsurface);
+ }
+ wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces_above, parent_link) {
subsurface_create(view, subsurface);
}

View file

@ -1,6 +1,7 @@
{ lib
, stdenv
, fetchFromGitHub
, fetchpatch
, cairo
, fontconfig
, libxkbcommon
@ -31,6 +32,15 @@ stdenv.mkDerivation rec {
hash = "sha256-1IztedN5/I/4TDKHLJ26fSrDsvJ5QAr+cbzS2PQITDE=";
};
patches = [
# To fix the build with wlroots 0.14.0:
(fetchpatch {
# Add fixes for wlroots 0.14.0
url = "https://github.com/project-repo/cagebreak/commit/d57869d43add58331386fc8e89c14bb2b74afe17.patch";
sha256 = "0g6sl8y4kk0bm5x6pxqbxw2j0gyg3ybr2v9m70q2pxp70kms4lqg";
})
];
nativeBuildInputs = [
makeWrapper
meson

View file

@ -1,6 +1,7 @@
{ lib
, stdenv
, fetchFromGitHub
, fetchpatch
, pkg-config
, meson
, ninja
@ -21,15 +22,29 @@
stdenv.mkDerivation rec {
pname = "labwc";
version = "unstable-2021-03-15";
version = "0.2.1"; # We're effectively using that version
src = fetchFromGitHub {
owner = "johanmalm";
repo = pname;
rev = "fddeb74527e5b860d9c1a91a237d390041c758b6";
sha256 = "0rhniv5j4bypqxxj0nbpa3hclmn8znal9rldv0mrgbizn3wsbs54";
rev = "6744e103014bcb0480133a029ec0f82f9b017e60";
sha256 = "0sdr4zkix8x3vmna4i946y3whpj7fqizpaac6yj7w0as9d6hj0iq";
};
patches = [
# To fix the build with wlroots 0.14:
(fetchpatch {
# output: access texture width/height directly
url = "https://github.com/johanmalm/labwc/commit/892e93dd84c514b4e6f34a0fab01c727edd2d8de.patch";
sha256 = "1p1pg1kd98727wlcspa2sffl7ijhvsfad6bj2rxsw322q0bz3yrh";
})
(fetchpatch {
# xdg: chase swaywm/wlroots@9e58301
url = "https://github.com/johanmalm/labwc/commit/874cc9e63706dd54d9f9fcb071f2d2e0c19d3d7e.patch";
sha256 = "0ypd47q5ffq4wjkrcr3068qjknn2s66zszyxg3dl0f87q2pxh6wx";
})
];
nativeBuildInputs = [ pkg-config meson ninja scdoc ];
buildInputs = [
cairo

View file

@ -10,13 +10,13 @@
stdenv.mkDerivation rec {
pname = "sway-unwrapped";
version = "1.6";
version = "1.6.1";
src = fetchFromGitHub {
owner = "swaywm";
repo = "sway";
rev = version;
sha256 = "0vnplva11yafhbijrk68wy7pw0psn9jm0caaymswq1s951xsn1c8";
sha256 = "0j4sdbsrlvky1agacc0pcz9bwmaxjmrapjnzscbd2i0cria2fc5j";
};
patches = [

View file

@ -1,23 +1,26 @@
{ lib, stdenv, fetchurl, meson, ninja, pkg-config
, cairo, libdrm, libexecinfo, libinput, libjpeg, libxkbcommon, wayland
{ lib, stdenv, fetchurl, cmake, meson, ninja, pkg-config
, cairo, doctest, libdrm, libexecinfo, libinput, libjpeg, libxkbcommon, wayland
, wayland-protocols, wf-config, wlroots, mesa
}:
stdenv.mkDerivation rec {
pname = "wayfire";
version = "0.7.1";
version = "0.7.2";
src = fetchurl {
url = "https://github.com/WayfireWM/wayfire/releases/download/v${version}/wayfire-${version}.tar.xz";
sha256 = "0wgvwbmdhn7gkdr2jl9jndgvl6w4x7ys8gmpj55gqh9b57wqhyaq";
sha256 = "1gasijjyfl00zpy6j9hh6qpwv0sw42h9irycbnm693j3vw9mcy66";
};
nativeBuildInputs = [ meson ninja pkg-config wayland ];
nativeBuildInputs = [ cmake meson ninja pkg-config wayland ];
buildInputs = [
cairo libdrm libexecinfo libinput libjpeg libxkbcommon wayland
cairo doctest libdrm libexecinfo libinput libjpeg libxkbcommon wayland
wayland-protocols wf-config wlroots mesa
];
# CMake is just used for finding doctest.
dontUseCmakeConfigure = true;
mesonFlags = [ "--sysconfdir" "/etc" ];
meta = with lib; {

View file

@ -1,11 +1,11 @@
{ lib, fetchzip }:
let
version = "0.53.1";
version = "0.55.1";
in fetchzip {
name = "sudo-font-${version}";
url = "https://github.com/jenskutilek/sudo-font/raw/v${version}/dist/sudo.zip";
sha256 = "1jil43j9ngz4422m76x67bafvxz75rncqqi57xd7fdxgcff7i8dp";
url = "https://github.com/jenskutilek/sudo-font/releases/download/v${version}/sudo.zip";
sha256 = "17vmcdz73mvy5m5zblgm2fi98v520hsl4lglww8gkhzl5zc6wb9y";
postFetch = ''
mkdir -p $out/share/fonts/

View file

@ -9,13 +9,13 @@
stdenv.mkDerivation rec {
pname = "marwaita";
version = "9.2.2";
version = "9.5";
src = fetchFromGitHub {
owner = "darkomarko42";
repo = pname;
rev = version;
sha256 = "0fbcncsldn2v6x6jla187mp6sjm529ij8rf85wcxpahc45vwb9pg";
sha256 = "0hhiwims4nxq06kakc0hc4rn4hvnlrpbx6ca929vd2qbi6wa2k9h";
};
buildInputs = [

View file

@ -2,13 +2,13 @@
stdenv.mkDerivation rec {
pname = "matcha-gtk-theme";
version = "2021-06-02";
version = "2021-06-24";
src = fetchFromGitHub {
owner = "vinceliuice";
repo = pname;
rev = version;
sha256 = "0wx0dgfl71wx02nrmf794xn28cvjx81vcmbnzwyyzwcbb9pacdpp";
sha256 = "sha256-YEa84y7ZhLqmN0kNSJR2/Txm5pZvSwuqnmckL4XnyjM=";
};
buildInputs = [ gdk-pixbuf librsvg ];

View file

@ -0,0 +1,23 @@
{ lib, stdenv, fetchFromGitHub }:
stdenv.mkDerivation rec {
pname = "materia-kde-theme";
version = "20210612";
src = fetchFromGitHub {
owner = "PapirusDevelopmentTeam";
repo = "materia-kde";
rev = version;
sha256 = "P76rLj7x4KpYb3hdHBSUM8X/RcxKoJl1THIXHdfPoAY=";
};
makeFlags = [ "PREFIX=$(out)" ];
meta = with lib; {
description = "A port of the materia theme for Plasma";
homepage = "https://github.com/PapirusDevelopmentTeam/materia-kde";
license = licenses.gpl3;
maintainers = [ maintainers.diffumist ];
platforms = platforms.all;
};
}

View file

@ -180,7 +180,10 @@ let
rm $out/jre/lib/jvmci/parentClassLoader.classpath
'';
"11-darwin-amd64" = ''
echo ""
# BUG workaround http://mail.openjdk.java.net/pipermail/graal-dev/2017-December/005141.html
substituteInPlace $out/conf/security/java.security \
--replace file:/dev/random file:/dev/./urandom \
--replace NativePRNGBlocking SHA1PRNG
'';
}.${javaVersionPlatform};
@ -259,7 +262,8 @@ let
''}
echo '1 + 1' | $out/bin/node -i
${lib.optionalString (javaVersion == "11") ''
${lib.optionalString (javaVersion == "11" && stdenv.isLinux) ''
# Doesn't work on MacOS, we have this error: "Launching JShell execution engine threw: Operation not permitted (Bind failed)"
echo '1 + 1' | $out/bin/jshell
''}'';
@ -269,7 +273,7 @@ let
homepage = "https://www.graalvm.org/";
description = "High-Performance Polyglot VM";
license = with licenses; [ upl gpl2Classpath bsd3 ];
maintainers = with maintainers; [ bandresen volth hlolli glittershark ];
maintainers = with maintainers; [ bandresen volth hlolli glittershark babariviere ];
platforms = [ "x86_64-linux" "x86_64-darwin" ];
};
};

View file

@ -2,11 +2,11 @@
stdenv.mkDerivation rec {
pname = "kotlin";
version = "1.5.10";
version = "1.5.20";
src = fetchurl {
url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip";
sha256 = "0kiwddq5b0dk63nlifb8bbaimh8inxsbk97nbw2m8qw17gby339g";
sha256 = "12wa7blf7l4360rfm8fk5x36ij0x1m61wrjrxkvligdavmil5wzd";
};
propagatedBuildInputs = [ jre ] ;

View file

@ -104,5 +104,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -100,5 +100,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -102,5 +102,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -105,5 +105,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -105,5 +105,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -104,5 +104,6 @@ stdenv.mkDerivation {
# "All of the code in the compiler-rt project is dual licensed under the MIT
# license and the UIUC License (a BSD-like license)":
license = with lib.licenses; [ mit ncsa ];
broken = stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64;
};
}

View file

@ -105,21 +105,11 @@ let
});
in rec {
vala_0_36 = generic {
version = "0.36.20";
sha256 = "19v7zjhr9yxkh9lxg46n9gjr0lb7j6v0xqfhrdvgz18xhj3hm5my";
};
vala_0_40 = generic {
version = "0.40.25";
sha256 = "1pxpack8rrmywlf47v440hc6rv3vi8q9c6niwqnwikxvb2pwf3w7";
};
vala_0_44 = generic {
version = "0.44.11";
sha256 = "06spdvm9q9k4riq1d2fxkyc8d88bcv460v360465iy1lnj3z9x2s";
};
vala_0_46 = generic {
version = "0.46.13";
sha256 = "0d7l4vh2xra3q75kw3sy2d9bn5p6s3g3r7j37bdn6ir8l3wp2ivs";

View file

@ -3,13 +3,13 @@
}:
stdenv.mkDerivation rec {
version = "1.38.0"; # N.B: if you change this, change pythonPackages.grpcio-tools to a matching version too
version = "1.38.1"; # N.B: if you change this, change pythonPackages.grpcio-tools to a matching version too
pname = "grpc";
src = fetchFromGitHub {
owner = "grpc";
repo = "grpc";
rev = "v${version}";
sha256 = "0an903nh8lz3xlf79zsh2v55nrwnjzzavkjlrsl7j9aysgwmgn4r";
sha256 = "0hjp946x5695srmc6bg2m7iih81jdmhpxn4bjcl80f09v4qsb0nl";
fetchSubmodules = true;
};
patches = [

View file

@ -0,0 +1,30 @@
{ lib, stdenv, fetchFromGitHub, postgresql, doxygen, xmlto, python2, gnused }:
stdenv.mkDerivation rec {
pname = "libpqxx";
version = "6.4.5";
src = fetchFromGitHub {
owner = "jtv";
repo = pname;
rev = version;
sha256 = "0djmjr2b5x5nd2a4idv5j8s6w0kdmvil910iv1kyc7x94dirbrni";
};
nativeBuildInputs = [ gnused python2 ];
buildInputs = [ postgresql doxygen xmlto ];
preConfigure = ''
patchShebangs .
'';
configureFlags = [ "--enable-shared" ];
meta = {
description = "A C++ library to access PostgreSQL databases";
homepage = "http://pqxx.org/development/libpqxx/";
license = lib.licenses.bsd3;
platforms = lib.platforms.unix;
maintainers = [ lib.maintainers.eelco ];
};
}

View file

@ -0,0 +1,58 @@
{ autoPatchelfHook
, dpkg
, fetchurl
, lib
, libcxx
, stdenv
}:
stdenv.mkDerivation rec {
pname = "edgetpu-compiler";
version = "15.0";
src = fetchurl rec {
url = "https://packages.cloud.google.com/apt/pool/${pname}_${version}_amd64_${sha256}.deb";
sha256 = "ce03822053c2bddbb8640eaa988396ae66f9bc6b9d6d671914acd1727c2b445a";
};
nativeBuildInputs = [
autoPatchelfHook
dpkg
];
buildInputs = [
libcxx
];
unpackPhase = ''
mkdir bin pkg
dpkg -x $src pkg
rm -r pkg/usr/share/lintian
cp pkg/usr/bin/edgetpu_compiler_bin/edgetpu_compiler ./bin
cp -r pkg/usr/share .
rm -r pkg
'';
dontConfigure = true;
dontBuild = true;
installPhase = ''
runHook preInstall
mkdir -p $out
cp -r ./{bin,share} $out
runHook postInstall
'';
meta = with lib; {
description = "A command line tool that compiles a TensorFlow Lite model into an Edge TPU compatible file.";
homepage = "https://coral.ai/docs/edgetpu/compiler";
license = licenses.asl20;
maintainers = with maintainers; [ cpcloud ];
platforms = [ "x86_64-linux" ];
};
}

View file

@ -0,0 +1,55 @@
{ lib, stdenv, fetchFromGitHub, meson, ninja, pkg-config, wayland-scanner
, libGL, wayland, wayland-protocols, libinput, libxkbcommon, pixman
, xcbutilwm, libX11, libcap, xcbutilimage, xcbutilerrors, mesa
, libpng, ffmpeg, libuuid, xcbutilrenderutil, xwayland
}:
stdenv.mkDerivation rec {
pname = "wlroots";
version = "0.13.0";
src = fetchFromGitHub {
owner = "swaywm";
repo = "wlroots";
rev = version;
sha256 = "01plhbnsp5yg18arz0v8fr0pr9l4w4pdzwkg9px486qdvb3s1vgy";
};
# $out for the library and $examples for the example programs (in examples):
outputs = [ "out" "examples" ];
nativeBuildInputs = [ meson ninja pkg-config wayland-scanner ];
buildInputs = [
libGL wayland wayland-protocols libinput libxkbcommon pixman
xcbutilwm libX11 libcap xcbutilimage xcbutilerrors mesa
libpng ffmpeg libuuid xcbutilrenderutil xwayland
];
mesonFlags = [ "-Dlogind-provider=systemd" "-Dlibseat=disabled" ];
postFixup = ''
# Install ALL example programs to $examples:
# screencopy dmabuf-capture input-inhibitor layer-shell idle-inhibit idle
# screenshot output-layout multi-pointer rotation tablet touch pointer
# simple
mkdir -p $examples/bin
cd ./examples
for binary in $(find . -executable -type f -printf '%P\n' | grep -vE '\.so'); do
cp "$binary" "$examples/bin/wlroots-$binary"
done
'';
meta = with lib; {
description = "A modular Wayland compositor library";
longDescription = ''
Pluggable, composable, unopinionated modules for building a Wayland
compositor; or about 50,000 lines of code you were going to write anyway.
'';
inherit (src.meta) homepage;
changelog = "https://github.com/swaywm/wlroots/releases/tag/${version}";
license = licenses.mit;
platforms = platforms.linux;
maintainers = with maintainers; [ primeos synthetica ];
};
}

View file

@ -1,18 +1,18 @@
{ lib, stdenv, fetchFromGitHub, meson, ninja, pkg-config, wayland-scanner
, libGL, wayland, wayland-protocols, libinput, libxkbcommon, pixman
, xcbutilwm, libX11, libcap, xcbutilimage, xcbutilerrors, mesa
, libpng, ffmpeg, libuuid, xcbutilrenderutil, xwayland
, libpng, ffmpeg, xcbutilrenderutil, xwayland, libseat
}:
stdenv.mkDerivation rec {
pname = "wlroots";
version = "0.13.0";
version = "0.14.0";
src = fetchFromGitHub {
owner = "swaywm";
repo = "wlroots";
rev = version;
sha256 = "01plhbnsp5yg18arz0v8fr0pr9l4w4pdzwkg9px486qdvb3s1vgy";
sha256 = "103sf9bsyqw18kmaih11mlxwqi9ddymm95w1lfxz06pf69xwhd39";
};
# $out for the library and $examples for the example programs (in examples):
@ -23,11 +23,9 @@ stdenv.mkDerivation rec {
buildInputs = [
libGL wayland wayland-protocols libinput libxkbcommon pixman
xcbutilwm libX11 libcap xcbutilimage xcbutilerrors mesa
libpng ffmpeg libuuid xcbutilrenderutil xwayland
libpng ffmpeg xcbutilrenderutil xwayland libseat
];
mesonFlags = [ "-Dlogind-provider=systemd" "-Dlibseat=disabled" ];
postFixup = ''
# Install ALL example programs to $examples:
# screencopy dmabuf-capture input-inhibitor layer-shell idle-inhibit idle

View file

@ -1,20 +1,20 @@
{ lib, stdenv, fetchFromGitHub, makeWrapper
, meson, ninja, pkg-config, wayland-protocols
, pipewire, wayland, systemd, libdrm, iniparser, scdoc, grim, slurp }:
, pipewire, wayland, systemd, libdrm, inih, scdoc, grim, slurp }:
stdenv.mkDerivation rec {
pname = "xdg-desktop-portal-wlr";
version = "0.3.0";
version = "0.4.0";
src = fetchFromGitHub {
owner = "emersion";
repo = pname;
rev = "v${version}";
sha256 = "sha256-6ArUQfWx5rNdpsd8Q22MqlpxLT8GTSsymAf21zGe1KI=";
sha256 = "sha256:13fbzh8bjnhk4xs8j9bpc01q3hy27zpbf0gkk1fnh3hm5pnyfyiv";
};
nativeBuildInputs = [ meson ninja pkg-config wayland-protocols makeWrapper ];
buildInputs = [ pipewire wayland systemd libdrm iniparser scdoc ];
buildInputs = [ pipewire wayland systemd libdrm inih scdoc ];
mesonFlags = [
"-Dsd-bus-provider=libsystemd"

View file

@ -217,13 +217,13 @@ let
netlify-cli =
let
esbuild = pkgs.esbuild.overrideAttrs (old: rec {
version = "0.11.14";
version = "0.13.6";
src = fetchFromGitHub {
owner = "evanw";
owner = "netlify";
repo = "esbuild";
rev = "v${version}";
sha256 = "sha256-N7WNam0zF1t++nLVhuxXSDGV/JaFtlFhufp+etinvmM=";
sha256 = "0asjmqfzdrpfx2hd5hkac1swp52qknyqavsm59j8xr4c1ixhc6n9";
};
});

File diff suppressed because it is too large Load diff

View file

@ -1,39 +1,26 @@
{ stdenv, lib, fetchurl, ocaml, findlib
, gtkSupport ? true
, lablgtk
}:
{ lib, fetchurl, buildDunePackage, stdlib-shims }:
stdenv.mkDerivation rec {
buildDunePackage rec {
pname = "ocamlgraph";
version = "1.8.8";
version = "2.0.0";
src = fetchurl {
url = "http://ocamlgraph.lri.fr/download/ocamlgraph-${version}.tar.gz";
sha256 = "0m9g16wrrr86gw4fz2fazrh8nkqms0n863w7ndcvrmyafgxvxsnr";
url = "https://github.com/backtracking/ocamlgraph/releases/download/${version}/ocamlgraph-${version}.tbz";
sha256 = "029692bvdz3hxpva9a2jg5w5381fkcw55ysdi8424lyyjxvjdzi0";
};
buildInputs = [ ocaml findlib ]
++ lib.optional gtkSupport lablgtk
;
minimalOCamlVersion = "4.03";
useDune2 = true;
createFindlibDestdir = true;
propagatedBuildInputs = [
stdlib-shims
];
buildFlags = [ "all" ];
installTargets = [ "install-findlib" ];
postInstall = lib.optionalString gtkSupport ''
mkdir -p $out/bin
cp dgraph/dgraph.opt $out/bin/graph-viewer
cp editor/editor.opt $out/bin/graph-editor
'';
meta = {
homepage = "http://ocamlgraph.lri.fr/";
description = "Graph library for Objective Caml";
license = lib.licenses.gpl2Oss;
platforms = ocaml.meta.platforms or [];
maintainers = [
lib.maintainers.kkallio
];
meta = with lib; {
homepage = "http://ocamlgraph.lri.fr/";
downloadPage = "https://github.com/backtracking/ocamlgraph";
description = "Graph library for OCaml";
license = licenses.gpl2Oss;
maintainers = with maintainers; [ kkallio superherointj ];
};
}

View file

@ -0,0 +1,12 @@
{ buildDunePackage, lablgtk, ocamlgraph, stdlib-shims, ... }:
buildDunePackage rec {
pname = "ocamlgraph_gtk";
inherit (ocamlgraph) version src useDune2 meta;
propagatedBuildInputs = [
lablgtk
ocamlgraph
stdlib-shims
];
}

View file

@ -0,0 +1,27 @@
{ lib
, buildPythonPackage
, fetchPypi
, isPy3k
}:
buildPythonPackage rec {
pname = "connection-pool";
version = "0.0.3";
disabled = !isPy3k;
src = fetchPypi {
pname = "connection_pool";
inherit version;
sha256 = "bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc";
};
doCheck = false; # no tests
pythonImportsCheck = [ "connection_pool" ];
meta = with lib; {
description = "Thread-safe connection pool";
homepage = "https://github.com/zhouyl/ConnectionPool";
license = with licenses; [ mit ];
maintainers = with maintainers; [ veprbl ];
};
}

View file

@ -1,18 +1,18 @@
{ lib
, buildPythonPackage
, fetchPypi
, isPy27
, pythonOlder
, sgmllib3k
}:
buildPythonPackage rec {
pname = "feedparser";
version = "6.0.6";
disabled = isPy27;
version = "6.0.8";
disabled = pythonOlder "3.6";
src = fetchPypi {
inherit pname version;
sha256 = "78f62a5b872fdef451502bb96e64a8fd4180535eb749954f1ad528604809cdeb";
sha256 = "sha256-XOBBCgWrJIyMfPyjoOoiA5aO6f9EhgZzea9IJ6WflmE=";
};
propagatedBuildInputs = [ sgmllib3k ];
@ -21,11 +21,12 @@ buildPythonPackage rec {
python -Wd tests/runtests.py
'';
pythonImportsCheck = [ "feedparser" ];
meta = with lib; {
homepage = "https://github.com/kurtmckee/feedparser";
description = "Universal feed parser";
license = licenses.bsd2;
maintainers = with maintainers; [ domenkozar ];
};
}

View file

@ -2,11 +2,11 @@
buildPythonPackage rec {
pname = "grpcio-tools";
version = "1.38.0";
version = "1.38.1";
src = fetchPypi {
inherit pname version;
sha256 = "c609678cf6faf4b467259757f848de4fbc7baca3c1e3f7b0e55c701c50fd94ae";
sha256 = "cd85f58038b92e1961f8127d79691e84e151390d35cae73c4c0cbe2042f76b77";
};
outputs = [ "out" "dev" ];

View file

@ -0,0 +1,34 @@
{ lib
, stdenv
, buildPythonPackage
, fetchPypi
, hidapi
, nose
}:
buildPythonPackage rec {
pname = "hid";
version = "1.0.4";
src = fetchPypi {
inherit pname version;
sha256 = "sha256-9hsDgvN6M0vIuoYEvIS5SHXuT1lPu6+CssOz6CeIP8E=";
};
propagatedBuildInputs = [ hidapi ];
checkInputs = [ nose ];
postPatch = ''
hidapi=${hidapi}/lib/
test -d $hidapi || { echo "ERROR: $hidapi doesn't exist, please update/fix this build expression."; exit 1; }
sed -i -e "s|libhidapi|$hidapi/libhidapi|" hid/__init__.py
'';
meta = with lib; {
description = "hidapi bindings in ctypes";
homepage = "https://github.com/apmorton/pyhidapi";
license = with licenses; [ mit ];
maintainers = with maintainers; [ AndersonTorres ];
};
}

View file

@ -6,14 +6,14 @@
buildPythonPackage rec {
pname = "hstspreload";
version = "2021.5.31";
version = "2021.6.21";
disabled = isPy27;
src = fetchFromGitHub {
owner = "sethmlarson";
repo = pname;
rev = version;
sha256 = "sha256-qTOzhPET2uj/ST28pzeckFTYYfyPgErvG4HB9zMMB2w=";
sha256 = "sha256-mo3DqEiuieCSM5d3Z+tKvtmazlh53pgsM4bkawSvuSM=";
};
# tests require network connection

View file

@ -1,33 +1,37 @@
{ lib
, buildPythonPackage
, pythonOlder
, fetchPypi
, fetchFromGitHub
, aiohttp
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "huisbaasje-client";
version = "0.1.0";
disabled = pythonOlder "3.6"; # requires python version >=3.6
disabled = pythonOlder "3.6";
src = fetchPypi {
inherit pname version;
sha256 = "6bc02384c37aba01719269b05882572050c80cd9abf98caa38519308e05b7db8";
src = fetchFromGitHub {
owner = "dennisschroer";
repo = "huisbaasje-client";
rev = "v${version}";
sha256 = "113aymffyz1nki3a43j5cyj87qa0762j38qlz0wd5px7diwjxsfl";
};
propagatedBuildInputs = [
aiohttp
];
# no tests on PyPI, no tags on GitHub
doCheck = false;
checkInputs = [
pytestCheckHook
];
pythonImportsCheck = [ "huisbaasje.huisbaasje" ];
meta = with lib; {
description = "Client for Huisbaasje";
homepage = "https://github.com/denniss17/huisbaasje-client";
homepage = "https://github.com/dennisschroer/huisbaasje-client";
license = licenses.asl20;
maintainers = with maintainers; [ dotlambda ];
};

View file

@ -0,0 +1,31 @@
{ lib
, buildPythonPackage
, fetchPypi
, aiohttp
}:
buildPythonPackage rec {
pname = "konnected";
version = "1.2.0";
src = fetchPypi {
inherit pname version;
sha256 = "b8b4e15c3228b01c9fad3651e09fea1654357ae8c333096e759a1b7d0eb4e789";
};
propagatedBuildInputs = [
aiohttp
];
# no tests implemented
doCheck = false;
pythonImportsCheck = [ "konnected" ];
meta = with lib; {
description = "Async Python library for interacting with Konnected home automation controllers";
homepage = "https://github.com/konnected-io/konnected-py";
license = licenses.mit;
maintainers = with maintainers; [ dotlambda ];
};
}

View file

@ -36,5 +36,7 @@ buildPythonPackage rec {
'';
homepage = "https://github.com/marshmallow-code/marshmallow";
license = licenses.mit;
maintainers = with maintainers; [ cript0nauta ];
};
}

View file

@ -4,29 +4,33 @@
, appdirs
, argcomplete
, colorama
, halo
, nose2
, semver
}:
buildPythonPackage rec {
pname = "milc";
version = "1.3.0";
version = "1.4.2";
src = fetchFromGitHub {
owner = "clueboard";
repo = "milc";
rev = version;
sha256 = "sha256-koyOBz+pB/vkTHOR1p77ACO11/ULDIBzqsszUUpnE88=";
sha256 = "sha256-aX6cTpIN9+9xuEGYHVlM5SjTPLcudJFEuOI4CiN3byE=";
};
propagatedBuildInputs = [ appdirs argcomplete colorama ];
propagatedBuildInputs = [
appdirs
argcomplete
colorama
halo
];
checkInputs = [ nose2 semver ];
checkPhase = ''
patchShebangs example hello
checkInputs = [
nose2
'';
semver
];
pythonImportsCheck = [ "milc" ];

View file

@ -10,11 +10,11 @@
buildPythonPackage rec {
pname = "pytest-order";
version = "0.11.0";
version = "1.0.0";
src = fetchPypi {
inherit pname version;
sha256 = "044e4c90d86895792e6da7577df7fed6440bd59ee593374f9252679a252d8eaa";
sha256 = "sha256-WZeiYrMSNO67Rh+anvJGh79zICm0mYRaQ5i2nttawyE=";
};
buildInputs = [ pytest ];
@ -28,7 +28,7 @@ buildPythonPackage rec {
meta = {
description = "Pytest plugin that allows you to customize the order in which your tests are run";
homepage = "https://github.com/mrbean-bremen/pytest-order";
homepage = "https://github.com/pytest-dev/pytest-order";
license = lib.licenses.mit;
maintainers = [ lib.maintainers.jacg ];
};

View file

@ -0,0 +1,51 @@
{ lib
, buildPythonPackage
, pythonOlder
, fetchFromGitHub
, aiohttp
, netifaces
, asynctest
, pytest-aiohttp
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "python-izone";
version = "1.1.5";
disabled = pythonOlder "3.5";
src = fetchFromGitHub {
owner = "Swamp-Ig";
repo = "pizone";
rev = "v${version}";
sha256 = "0ilvawlhyg5p08ri26zbcvgysrfsmza23scy4ijrx3jbc3669r2c";
};
propagatedBuildInputs = [
aiohttp
netifaces
];
checkInputs = [
asynctest
pytest-aiohttp
pytestCheckHook
];
disabledTests = [
# attempt network connection
"test_fail_on_connect"
"test_connection_lost"
"test_ip_addr_change"
];
pythonImportsCheck = [ "pizone" ];
meta = with lib; {
description = "A python interface to the iZone airconditioner controller";
homepage = "https://github.com/Swamp-Ig/pizone";
license = licenses.gpl3Plus;
maintainers = with maintainers; [ dotlambda ];
};
}

View file

@ -0,0 +1,44 @@
{ lib
, isPy3k
, fetchFromGitHub
, fetchpatch
, buildPythonPackage
, networkx
, jinja2
, ipython
, jsonpickle
, numpy }:
buildPythonPackage rec {
pname = "pyvis";
version = "unstable-2021-04-29";
# We use unstable, as test are failing for 0.1.9
src = fetchFromGitHub {
owner = "WestHealth";
repo = pname;
rev = "4c521302abf9725dcbe7f59962baf85360b2718d";
sha256 = "sha256-DYbHQpxtSfiLbzmBGclym/ChM0WLBzSEC/3phDTtGY8=";
};
patches = [
# Remove when https://github.com/WestHealth/pyvis/pull/101 is merged.
(fetchpatch {
url = "https://github.com/WestHealth/pyvis/commit/158a34de45f970b17ffd746c6e705b89128e2445.patch";
sha256 = "sha256-zK72nrnn5YLGNW6PKYUyHry5ORCdt1T1oH6n1X64DKg=";
})
];
propagatedBuildInputs = [ networkx jinja2 ipython jsonpickle ];
checkInputs = [ numpy ];
pythonImportsCheck = [ "pyvis" ];
meta = with lib; {
homepage = "https://github.com/WestHealth/pyvis";
description = "Python package for creating and visualizing interactive network graphs";
license = licenses.bsd3;
maintainers = with maintainers; [ erictapen ];
};
}

View file

@ -0,0 +1,26 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
}:
buildPythonPackage rec {
pname = "stopit";
version = "1.1.2";
# tests are missing from the PyPi tarball
src = fetchFromGitHub {
owner = "glenfant";
repo = pname;
rev = version;
sha256 = "sha256-uXJUA70JOGWT2NmS6S7fPrTWAJZ0mZ/hICahIUzjfbw=";
};
pythonImportsCheck = [ "stopit" ];
meta = with lib; {
description = "Raise asynchronous exceptions in other thread, control the timeout of blocks or callables with a context manager or a decorator";
homepage = "https://github.com/glenfant/stopit";
license = with licenses; [ mit ];
maintainers = with maintainers; [ veprbl ];
};
}

View file

@ -0,0 +1,28 @@
{ lib, buildPythonPackage, fetchFromGitHub, nixosTests, six, twisted }:
buildPythonPackage rec {
pname = "txredisapi";
version = "1.4.7";
src = fetchFromGitHub {
owner = "IlyaSkriblovsky";
repo = "txredisapi";
rev = "1.4.7";
sha256 = "1f7j3c5l7jcfphvsk7nqmgyb4jaydbzq081m555kw0f9xxak0pgq";
};
propagatedBuildInputs = [ six twisted ];
doCheck = false;
pythonImportsCheck = [ "txredisapi" ];
passthru.tests.unit-tests = nixosTests.txredisapi;
meta = with lib; {
homepage = "https://github.com/IlyaSkriblovsky/txredisapi";
description = "non-blocking redis client for python";
license = licenses.asl20;
maintainers = with maintainers; [ dandellion ];
};
}

View file

@ -8,13 +8,13 @@
buildPythonPackage rec {
pname = "wallbox";
version = "0.4.5";
version = "0.4.6";
disabled = pythonOlder "3.7";
src = fetchPypi {
inherit pname version;
sha256 = "cf1616d79cb0345849ceff1b89a7c80e26ae19b3c2d818def62d6975665838c1";
sha256 = "651c61e2264258382d1f54c4f0bf6bcd198482a744d8f1db3dd73084c240d9bb";
};
propagatedBuildInputs = [

View file

@ -0,0 +1,41 @@
{ buildPythonPackage, fetchPypi, lib, isPy27, marshmallow, pytestCheckHook
, pytest-aiohttp, webtest, webtest-aiohttp, flask, django, bottle, tornado
, pyramid, falcon, aiohttp }:
buildPythonPackage rec {
pname = "webargs";
version = "8.0.0";
disabled = isPy27;
src = fetchPypi {
inherit pname version;
sha256 = "0xy6na8axc5wnp2wg3kvqbpl2iv0hx0rsnlrmrgkgp88znx6cmjn";
};
pythonImportsCheck = [
"webargs"
];
propagatedBuildInputs = [ marshmallow ];
checkInputs = [
pytestCheckHook
pytest-aiohttp
webtest
webtest-aiohttp
flask
django
bottle
tornado
pyramid
falcon
aiohttp
];
meta = with lib; {
description = "Declarative parsing and validation of HTTP request objects, with built-in support for popular web frameworks";
homepage = "https://github.com/marshmallow-code/webargs";
license = licenses.mit;
maintainers = with maintainers; [ cript0nauta ];
};
}

View file

@ -0,0 +1,29 @@
{ buildPythonPackage, fetchFromGitHub, lib, isPy27, webtest, invoke, flake8
, aiohttp, pytest-aiohttp, pytestCheckHook }:
buildPythonPackage rec {
pname = "webtest-aiohttp";
version = "2.0.0";
disabled = isPy27;
src = fetchFromGitHub {
owner = "sloria";
repo = pname;
rev = version;
sha256 = "1apr1x0wmnc6l8wv67z4dp00fiiygda6rwpxlspfk7nk9zz37q2j";
};
pythonImportsCheck = [
"webtest_aiohttp"
];
propagatedBuildInputs = [ webtest ];
checkInputs = [ invoke flake8 aiohttp pytest-aiohttp pytestCheckHook ];
meta = with lib; {
description = "Provides integration of WebTest with aiohttp.web applications";
homepage = "https://github.com/sloria/webtest-aiohttp";
license = licenses.mit;
maintainers = with maintainers; [ cript0nauta ];
};
}

View file

@ -4,12 +4,13 @@
# Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix
{ self, derive }:
let derive2 = derive { biocVersion = "3.11"; };
let derive2 = derive { biocVersion = "3.12"; };
in with self; {
AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; };
AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.15"; sha256="0by0y2nyqhihpwzm36lggkc0dqvxz22k6ck1wcmrf7sck8xg54ji"; depends=[AnnotationHubData ensembldb]; };
BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; };
AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.18"; sha256="08n2p2xm7s75q5ps4w9dqg4p3w3baz187n3s5g8rpmd5d2i4zy8r"; depends=[AnnotationHubData ensembldb]; };
BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; };
BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; };
BSgenome_Amellifera_NCBI_AmelHAv3_1 = derive2 { name="BSgenome.Amellifera.NCBI.AmelHAv3.1"; version="1.5.0"; sha256="1cglml4rlqr5hmf4dx51grx6s25h6xc3lqv569nx2sl4gdz28s47"; depends=[BSgenome]; };
BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; };
BSgenome_Amellifera_UCSC_apiMel2_masked = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2.masked"; version="1.3.99"; sha256="128jmpnpbz1afqvhvdc9vrc8gmlyg26ca7qz362qsx89jrm4khpr"; depends=[BSgenome BSgenome_Amellifera_UCSC_apiMel2]; };
BSgenome_Aofficinalis_NCBI_V1 = derive2 { name="BSgenome.Aofficinalis.NCBI.V1"; version="1.0.0"; sha256="0n6m5jnpiz6bv46b7s396qkxha2d8271j747j50v2zb6a7wd0rjr"; depends=[BSgenome]; };
@ -33,6 +34,7 @@ in with self; {
BSgenome_Cfamiliaris_UCSC_canFam3 = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3"; version="1.4.0"; sha256="1ir092yh1h03ag1lnj2rh5hjp2mqrw7fcyb6mqyjm0h8g1pmpicr"; depends=[BSgenome]; };
BSgenome_Cfamiliaris_UCSC_canFam3_masked = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3.masked"; version="1.3.99"; sha256="07y28g6b4sbp38yg5rwldda7s1cwcpil6rzsb4csskvs0xi5286l"; depends=[BSgenome BSgenome_Cfamiliaris_UCSC_canFam3]; };
BSgenome_Cjacchus_UCSC_calJac3 = derive2 { name="BSgenome.Cjacchus.UCSC.calJac3"; version="1.4.2"; sha256="1s1srg6lr3dndbpv83bqlxz5lhyhxh431yrd919yl4fwmr5rvx0z"; depends=[BSgenome]; };
BSgenome_Creinhardtii_JGI_v5_6 = derive2 { name="BSgenome.Creinhardtii.JGI.v5.6"; version="1.5.0"; sha256="0px1p3hgbpk3pvmg77knqxwmh1jd8jjf763kzxf0725pnl9dca2v"; depends=[BSgenome]; };
BSgenome_Dmelanogaster_UCSC_dm2 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2"; version="1.4.0"; sha256="1vnqbm1123zmpn1iwyygr1p4js0j6vifyz7iwzgkiw543yb1mwnl"; depends=[BSgenome]; };
BSgenome_Dmelanogaster_UCSC_dm2_masked = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2.masked"; version="1.3.99"; sha256="1qclf62c3qrdhnrb6p4rhj7wrarlsbm716d37k0gbdzkfm2vhyr7"; depends=[BSgenome BSgenome_Dmelanogaster_UCSC_dm2]; };
BSgenome_Dmelanogaster_UCSC_dm3 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm3"; version="1.4.0"; sha256="19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"; depends=[BSgenome]; };
@ -81,7 +83,9 @@ in with self; {
BSgenome_Mmusculus_UCSC_mm8_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm8.masked"; version="1.3.99"; sha256="1a2ywmy96cbwmvbdid73c0kln56qrbd7ipfzkzl97f56k3g985j5"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm8]; };
BSgenome_Mmusculus_UCSC_mm9 = derive2 { name="BSgenome.Mmusculus.UCSC.mm9"; version="1.4.0"; sha256="1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"; depends=[BSgenome]; };
BSgenome_Mmusculus_UCSC_mm9_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm9.masked"; version="1.3.99"; sha256="00bpbm3havqcxr4g63zhllsbpd9q6svgihks7qp7x73nm4gvq7fn"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm9]; };
BSgenome_Osativa_MSU_MSU7 = derive2 { name="BSgenome.Osativa.MSU.MSU7"; version="0.99.1"; sha256="0da1xcxxgij04cf5gri43sprbbm9nq790phcfqcvc00mv7q78cpn"; depends=[BSgenome]; };
BSgenome_Osativa_MSU_MSU7 = derive2 { name="BSgenome.Osativa.MSU.MSU7"; version="0.99.2"; sha256="1rppki62c916drc24jd2j1cmbhn3x316z16123gc654wj1c5s9vi"; depends=[BSgenome]; };
BSgenome_Ppaniscus_UCSC_panPan1 = derive2 { name="BSgenome.Ppaniscus.UCSC.panPan1"; version="1.4.3"; sha256="0schlki35jmv678hgxv7jmrcmbv2wixqhpk18awpr2pwq2j1ahmc"; depends=[BSgenome]; };
BSgenome_Ppaniscus_UCSC_panPan2 = derive2 { name="BSgenome.Ppaniscus.UCSC.panPan2"; version="1.4.3"; sha256="0jbxfix328qzsd94vjh7dlnzpygkdwbglcn4d1pdivm43ggww10a"; depends=[BSgenome]; };
BSgenome_Ptroglodytes_UCSC_panTro2 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro2"; version="1.4.0"; sha256="14yvajlldr3qhclg9n2j48q60rgbz6x1ypgzd6dgf4c6jxl90p0q"; depends=[BSgenome]; };
BSgenome_Ptroglodytes_UCSC_panTro2_masked = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro2.masked"; version="1.3.99"; sha256="1dy1bf6rsmzv6qj9d2a1sz56w33pk63g3qxm8znfdw11hmdbq9m1"; depends=[BSgenome BSgenome_Ptroglodytes_UCSC_panTro2]; };
BSgenome_Ptroglodytes_UCSC_panTro3 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3"; version="1.4.0"; sha256="1vbfx0zrj4rcwcsm1q09xdiv0mmrycj8223lnxqb8nr5r017f7gm"; depends=[BSgenome]; };
@ -99,7 +103,7 @@ in with self; {
BSgenome_Sscrofa_UCSC_susScr11 = derive2 { name="BSgenome.Sscrofa.UCSC.susScr11"; version="1.4.2"; sha256="0m7c2r74qp3rjnkxxyz18gd8xjk2f3cp1cr07bwd8v60mvgdn8cq"; depends=[BSgenome]; };
BSgenome_Sscrofa_UCSC_susScr3 = derive2 { name="BSgenome.Sscrofa.UCSC.susScr3"; version="1.4.0"; sha256="0l70arnpshiviq3xj61fw87dhf8sggq6k1yryagbhdb40d5cq8lq"; depends=[BSgenome]; };
BSgenome_Sscrofa_UCSC_susScr3_masked = derive2 { name="BSgenome.Sscrofa.UCSC.susScr3.masked"; version="1.3.99"; sha256="0ym82vysn131anp8zmmkgyx6zmyh44am5i1m3j9kj5lvq874ycha"; depends=[BSgenome BSgenome_Sscrofa_UCSC_susScr3]; };
BSgenome_Tgondii_ToxoDB_7_0 = derive2 { name="BSgenome.Tgondii.ToxoDB.7.0"; version="0.99.0"; sha256="1ilpfd66hn0qh1dkj9l8wkddym9d320blwj5hx0x7dq92bnzs98v"; depends=[BSgenome]; };
BSgenome_Tgondii_ToxoDB_7_0 = derive2 { name="BSgenome.Tgondii.ToxoDB.7.0"; version="0.99.1"; sha256="1naxnls0r1r6csfs88mmjnfa7nmsgjx5lngn1ln4llragjrqnngm"; depends=[BSgenome]; };
BSgenome_Tguttata_UCSC_taeGut1 = derive2 { name="BSgenome.Tguttata.UCSC.taeGut1"; version="1.4.0"; sha256="0v8g4q64pj4mxr8wzyxm9w2d2lyzq1qzl5yvh2dvwpqnghicj10v"; depends=[BSgenome]; };
BSgenome_Tguttata_UCSC_taeGut1_masked = derive2 { name="BSgenome.Tguttata.UCSC.taeGut1.masked"; version="1.3.99"; sha256="05g9qp2vkp8ia6kqgy07ihnr1w1ca8c96rg7vfahh2nsr5j6ymba"; depends=[BSgenome BSgenome_Tguttata_UCSC_taeGut1]; };
BSgenome_Tguttata_UCSC_taeGut2 = derive2 { name="BSgenome.Tguttata.UCSC.taeGut2"; version="1.4.2"; sha256="1ikbd5q77l2zmbmbm511s41h00627zi0gq31cm4qr3k1cvlz8617"; depends=[BSgenome]; };
@ -116,8 +120,8 @@ in with self; {
EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; };
EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; };
EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.3"; sha256="0hy1kjl2apzxpmg4a6yyg8c2j5ljphmjlm1in9b8g0ny1fjw4nci"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.4"; sha256="0n0g2spy89fz1632vj9lj0b072rjbixcxnfwgf6sdzp12lhsc60z"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.7"; sha256="1vsi24q902wqlnbxp8hks03x53n4yh5cmpyyxdvmxfbn1rxfvnyf"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.6"; sha256="16zsqnrb3ypwv0sqfmhqmkxqhp90k21in7bjhjf0zagywsyyhpww"; depends=[AnnotationHub EpiTxDb]; };
EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.3"; sha256="0fdyzxfkdi9x2hbpw1q5g0wm8qwzgbzqdqh2nampdisrbfr73amm"; depends=[AnnotationHub EpiTxDb]; };
EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; };
FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
@ -127,8 +131,8 @@ in with self; {
FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
GO_db = derive2 { name="GO.db"; version="3.11.4"; sha256="1sfrjgf013cwsll85p1q1idc2r6qjx2shsxgv33d9mw5kai4di2k"; depends=[AnnotationDbi]; };
GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.3"; sha256="1swaqygs0hpgrxcggwjhz9y5j9yqxb85pncsr17r3rrcaky7jpcl"; depends=[]; };
GO_db = derive2 { name="GO.db"; version="3.12.1"; sha256="1ffsf7cnfi3jlwbpkbayw59wwkzpvw9p929c8gwrc86ksdcnjcg0"; depends=[AnnotationDbi]; };
GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.4"; sha256="0wi92x3cgf8wgik67g863y53k097hr9cjh06s2dqayivs3hwx7ls"; depends=[]; };
GenomicState = derive2 { name="GenomicState"; version="0.99.9"; sha256="0qpa77bsycm3y82jrxq7r27gsygb1qbhkakz3cln3jv3sfkf0aj7"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; };
Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; };
Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; };
@ -153,18 +157,18 @@ in with self; {
JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
KEGG_db = derive2 { name="KEGG.db"; version="3.2.4"; sha256="125dksxg6jx0mh6zfl0icnjca1j7j0i3ml8fq0f4klfbcjvd2q1f"; depends=[AnnotationDbi]; };
LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="1.2.0"; sha256="1y2dgmqhv0x4ydvxq6dcg5m0gzcvlzb9jq4hs3axdyy8d62i8flh"; depends=[LRBaseDbi RSQLite]; };
LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="1.2.0"; sha256="04z4fmfyl1k6m3paab6ip9h015q90xpxxn5lccm03k3pcv7wf5mh"; depends=[LRBaseDbi RSQLite]; };
LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="1.2.0"; sha256="1kdcm469qkvncw92c5wjlgnfc9fnqpn15nc124zv0ykpx34fd922"; depends=[LRBaseDbi RSQLite]; };
LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="1.2.0"; sha256="1amsik0g0pl72jfi8v9jnqpfs8rdsrq1ybly79lyhq1rpdjicayk"; depends=[LRBaseDbi RSQLite]; };
LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="1.2.0"; sha256="16c0fcw6y4nqgvwzx3v8h822dbw3cbmb8h4sd7g9zwmylibbl35g"; depends=[LRBaseDbi RSQLite]; };
LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="1.2.0"; sha256="1rdamsg3gikh22sfkafacl0b8507z5hk28j1vcaxdscrwwyrc6bz"; depends=[LRBaseDbi RSQLite]; };
LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="1.2.0"; sha256="1qdyh4i016i40zn72h1x7194x1wi8pddl6cyln658k334p60x86l"; depends=[LRBaseDbi RSQLite]; };
LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="1.2.0"; sha256="1viw7vhy3m7b7fwkm38y7f26bzywl1n2i1cff7mp91czss26bq9s"; depends=[LRBaseDbi RSQLite]; };
LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="1.2.0"; sha256="1s5i4167ygwq35j60ns4f1yf6llasxx6wad61xng5p8lgq3186nr"; depends=[LRBaseDbi RSQLite]; };
LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="1.2.0"; sha256="08xnr1wlg3lkjdmjdvy2i12ki3ym7z4gr3zvyj2ghkyn0gyd73gp"; depends=[LRBaseDbi RSQLite]; };
LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="1.2.0"; sha256="0hqns1c4xgay7aagbhl46b9zwf5hp1p33jf9f28l5mxvvc96zrbn"; depends=[LRBaseDbi RSQLite]; };
LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="1.2.0"; sha256="0kl6f7a1fxxrchz8s5dsh2vqsa8ckigi4clpnr76qvhlcfn77hk7"; depends=[LRBaseDbi RSQLite]; };
LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.0"; sha256="13cjh9nrdww0mz6v1187zal9l2q6phicj54b7qcwbxblvz5byakv"; depends=[LRBaseDbi RSQLite]; };
LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="2.0.0"; sha256="094wnmlgq14cdff6pia8dl4y1127fwxn1cn02p6p8db47bh5vv1a"; depends=[LRBaseDbi RSQLite]; };
LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="2.0.0"; sha256="0z9xmws8dw8kzjy4qmnlm46rmzn0a4bqazm4yy6jpyq69iqi7mfp"; depends=[LRBaseDbi RSQLite]; };
LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="2.0.0"; sha256="0zn5mnp7avz0d288ilibg4955cw5g90yk72img5hs9sscc7kl7zk"; depends=[LRBaseDbi RSQLite]; };
LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="2.0.0"; sha256="1kvvyc7rf159npfi93vvng9c6yn33ngpmjqzqxfjanli2wmspc2q"; depends=[LRBaseDbi RSQLite]; };
LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="2.0.0"; sha256="0khgsjsp3bn6j81rkzljffz7hr25grkw299hh7ja79jkhh2naibs"; depends=[LRBaseDbi RSQLite]; };
LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="2.0.0"; sha256="046fgcdnr4yk9gpgk1v6gpg2mv7jb27zlxyqrwf9mcmr28m7f13p"; depends=[LRBaseDbi RSQLite]; };
LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="2.0.0"; sha256="0lklf8bilbcf1xbb7ggry8x9pd6qwgv5w19pddgl1ns9dgn0g447"; depends=[LRBaseDbi RSQLite]; };
LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="2.0.0"; sha256="1ig17q920l670kbrinf2939cpvlbdf3zz01fj4bmf1sw4b58v5zh"; depends=[LRBaseDbi RSQLite]; };
LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="2.0.0"; sha256="0rjm5b63hb1h0kkjqxrldh3d2h7l6qqx2cdl3lf2hn1rpfgifxrk"; depends=[LRBaseDbi RSQLite]; };
LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="2.0.0"; sha256="0k5dkflsxg0bs2aqcsh0b3vq2clycpxqj138rs6h0w8gr9613w5m"; depends=[LRBaseDbi RSQLite]; };
LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.0"; sha256="1y6nivswrsivlylc9413bngli5nbbd1q6rvr5whx3rh9rxvm4r17"; depends=[LRBaseDbi RSQLite]; };
LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; };
LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; };
MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.10.0"; sha256="057531mvxip32lyqak4hh964ms0cil29p5cch5fpjw5vbbzidrlc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
@ -183,83 +187,84 @@ in with self; {
MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.11.0"; sha256="1m793ri39gjm41yfq3yglg7dxyqd2ss0i0vvivqxigff63iz8awh"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.13.0"; sha256="0l55b03072s052ji52glqpqc8x0z7d4fkf392113bskmplgcg3ny"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.13.0"; sha256="061bp9y592h57y0i4y6aah9vln23f1mk1yzx9fxhimnd4rzmwzl4"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.13.0"; sha256="10253yy1gv96x6h92xz35qhz087ma6whr5pbi69mjdfc21pzyc7a"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.13.0"; sha256="19aw7vq6iafhjb1n7kgbyaib2di682dia0yjc4r3cnzv7k7kv8z0"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.13.0"; sha256="0ljijw7p5nxvgda2jb3gf6x03y046ihxz7nl2s90rgf4s1fjciaf"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.13.0"; sha256="1afv8yf2yggid12id0j5v5gf5qhcdmanfanp2d13cnkzgxkr88js"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.13.0"; sha256="1amgb9gr5aa1cgggf2x5ailzm4mfq78lfqnx1yzq1ix3nh5idajf"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.13.0"; sha256="0byxvlwcix154qbpvpgv9zblyn1wx6npn366303v81r6x5gh4qkh"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.13.0"; sha256="1v1f7b0qyii8nakn7lhckbyqyw43101i2y0dcamp5lds8m79691d"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.13.0"; sha256="1rr4yr0n2zdkcq2xj7cyv683sgv5mnjwcylz4r8wkrdhji28zyyh"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.13.0"; sha256="1nz96wyw99rz2wlsa59y36ddxg3i4vz116i4sjvm3ww2q71nimmr"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.13.0"; sha256="0irsxad7s1asllwajwy1bl2frs22sgwv60fdgnslgxmngg5v6jbc"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.13.0"; sha256="0qq08f245qsq6c9g38wcbn9gnhhx2wlsas3na1n5fycr5d19qbvz"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.13.0"; sha256="0mjg8dinlp1qqnf2h1lpyhig9ywa9x99isyvj2z37mrbk9mh6si6"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.13.0"; sha256="1xlcn55v3hyngdqmb5a3v64ll1cmm1yd8gbxw3sbbbnwp349w2jb"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.13.0"; sha256="13naakq86kgkbd8cif5gi7hzag64xkp8mddrwn4hc67i1dzlfyq0"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.13.0"; sha256="1b4sl5qiwh0vxm1svwqwsbrz2b88jmf7s14nwhb27431ml5lya03"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.13.0"; sha256="12qak3gzbr7hpg08nmpa69h0qw0v4kdplf10ilycc8ra1nrm9s8x"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.13.0"; sha256="1gp33ga0gdd09flz1c9q7hf3y8si238zb6hmn1v9pqmkww5pns3g"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.13.0"; sha256="0v3jlfg95fgh4f5gnqz1prb2lwj1bn7ggparxqzc63j0jws0wmgp"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.12.0"; sha256="1vhg07r0yk876zlzbn86nj6g91ilrnfrj3p5q2pkrcsic0m5nwcw"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.13.0"; sha256="12kc26wsg390hzhi4x2rmnm1s38sqs4nckkvrnmv70mjabg34w49"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.13.0"; sha256="171nrhd4nqpgcaaa62gj1di2xdsy3n8pp09lsbyq4slasmcd450w"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.13.0"; sha256="15nb1pbnfkhr83q06irghi4r7la5h6dn993la3sn1f8614hcr2wd"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.13.0"; sha256="1jgvbp0g4armmvg2w5rpxkx8zclll5nl6j6zbq9d1w7kk4lazw83"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.13.0"; sha256="0p3p4ld74hszgvv6xd5kmd7i9glv1l4mdqigglr1sk4vig1qwg47"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.13.0"; sha256="0pbd49s4n1mar58did4amrq5h78ic54gk6fnlyicddf7xg24qsp5"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.13.0"; sha256="1bga7nlfkyqqxq4m9c44l6hnswqa3dfbjzbnnyh8xmyp7m91kbj3"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.13.0"; sha256="0vaz520r54ydbb0why68hnigd924y3vk72357cms363qs6753dij"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.13.0"; sha256="1fjdb5h3dsgxk38c1fff30knnhav9w6pdl7vqdfdhq7642c6a1y4"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.13.0"; sha256="1vqwdf8sj0qid2df0qqhxlwbccmlmw63kmhdmz49fz3hxyr081z5"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.13.0"; sha256="1ixn62rn6vc17ks23hn9hkfyynp3p7mf9wq3rw9wiyyzpl6xgqw0"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.13.0"; sha256="118j864y3bn386cgjbwqwvdjflk7f510yzx451w9mcbfm7af8nqh"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.13.0"; sha256="094h4w8p0h81pqz4f1ykk0285fq5cayvkv01712bi85qqvyc8vh0"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.13.0"; sha256="19xj1x0bnxk8y3n7cjihp7aa1l6vvy6d3m949zv0cs9ia8mw5lrh"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.13.0"; sha256="1m2zi73d23hqa7dn8ab6bm3ynjc4mngakcba5wa3fkvv972kba26"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.13.0"; sha256="0sgp5hckh3waa1bp43rsnx6hlcvjr7a6yw46m6r3jzwdfpkmbh4v"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.13.0"; sha256="17k0h1jfiqwg6396m3mnsq3v042p8rck19wdhrgdasb6vp7rnk7w"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.13.0"; sha256="0z68zs190sv1v7r0059hf5c3mcrv2hil3hx3liycck2fiwarjw8d"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.13.0"; sha256="0nbc8710nwjlxxcslljcfj72qlq1k64i8p4jvyddjp8fj8anca9f"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.13.0"; sha256="0s45w1rnz79azqkk852knicviqc6jisxnpkzmm4j6ydjqibz4xv0"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.13.0"; sha256="1azm323gqax1ffixvqqghqbbmv7gfq5jhxhn1qr07raml1z56yiw"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.13.0"; sha256="0aix6k1lmdd4wms4dcmhw35gsyn07cvir60wslcabsvccjxbip4i"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.13.0"; sha256="1fb3xhwf08h91pmb7nmkz68zwrg8ac1sk55923baa6bn9bwli2ny"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.13.0"; sha256="0py8r05ix4k6xfm3jnzkgzk59gzc1bj43271rbgsmqlyh42abgay"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.13.0"; sha256="01mmn4021cscnp9wfz84rxckqqfn4p98bh4g1mlgwb7wsgf5nbc9"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.13.0"; sha256="1h4y7iqqb4fili8k4k11z5nmgd0hq8rw7p7awjwl6w5v4n9im0fs"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.13.0"; sha256="03rj89bmw4j2fc9lnpwx479j5m089jcj6iisf339bzcw1rgryi56"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.13.0"; sha256="1r2c422w1c88w4sh3s8mqpffx10322c3j44qz4ymxgvnarxc3fkh"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.13.0"; sha256="09s2d9hjzzhlig2bnnr5wkpxgf8pj4q9hwvs4sj3ylabvlg5ak09"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.13.0"; sha256="0l0w4px7wp58rqry4xbz2qh5jc97mmw7pvc1dnhkknr6n96fcpik"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.13.0"; sha256="1v4jcsdww7j0rnck3r30g8p57419ai676qlawmra1w6sdflqcpj9"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.13.0"; sha256="0a6mxwmvsh6zcyqw83y7y1axviqrzy2kdbalh2w8xa3yn72z65ln"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.13.0"; sha256="1n197svyc3p4xf3lc5qdjnhlkiadra43bxdqisk2w60jdijnxyh0"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.13.0"; sha256="1h7iqb9kcxcgslm8rab4469vvay3msd3w08bxv3h0mq7q870z0r8"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.13.0"; sha256="0mxs9bjs0pnj9aszfdydkw2kljcixwflvwcaz94my30444c1pi9l"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.13.0"; sha256="03fcidamz9x0xgyl5fsvphc7l5v2hvr4izf6ma2g34a1l1qhs0g1"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.13.0"; sha256="0vyi7awyy3v851ylc95xrn5wvbprq1qq3x1ypsb31qqny940m5rf"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.13.0"; sha256="18amkwn9wglj3a5hh9b0zfd23vizmj1nfa90jz93w1adksjlky7v"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.13.0"; sha256="1yrx8dj0lx77qny0dha68lwy3x3c9d4rkb8gng3by55zgp6hghms"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.13.0"; sha256="18x1q7md0zvb233qw1x6qs8k55hjkh1nd1cvizs2vhsbvzfw9yjz"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.13.0"; sha256="1fqi308z4psspykj1dkq76v94641wq9mnxwj3yzd9j49c8x45294"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.13.0"; sha256="0kakfkkmvmlk22g1aa86grahfbvk8hainar1760r5j8zrny8dvvr"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.13.0"; sha256="09gzlfp958bfkvas0hxaw6r319y02sygmb7ywxvdqj41sxyv63zp"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.13.0"; sha256="0cm3352chz3qaknq0an8gfsk2xbfn0jw5rqss3lrxcq35x1qk21a"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.13.0"; sha256="1hpj2cr8gixqlvfhnqvr5m3m1ngfdrvavqipf38m5cnm1wlqk9ll"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.13.0"; sha256="1ryrr1mr7w6h8xs4f79zmnnv8j4mkjckxjk4npcdiilfb2zg1y3j"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.13.0"; sha256="10ygdjx63ajd1vsgrn2f8isvaxdf2p6yg45yqrmjv3zhbvi1aav1"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.13.0"; sha256="153i3ln2m8rb0445hjplnim4h8dvvmf370zglcc5ww9dcx9m93nb"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.13.0"; sha256="0sm2sg246w35vfv9dam40x85mdv18fpi5j1k31432chrda867rf0"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.13.0"; sha256="0xqapk2fkaj719ih818rpb1ciiblw6zr6a83y0xpwrm8y29m3qh5"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.13.0"; sha256="0zfrjhrw2jrk6yzkmjnxfqws1a2sylpz1rz2im5n3xnlk6l5d0zn"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.13.0"; sha256="0v6g4wqsph3jhxziayijqn63cjp9z4i6jpm5wk431qp9zhr3vw4w"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.13.0"; sha256="1v2blabzcd1vdmc47m9rfknlf4865ppvfx8p2nm9cilrwp29w1pk"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.13.0"; sha256="0ymc65z935yzz0dxvrlx1wj40zmd7192jdav3736syhq6jrwmq3d"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.13.0"; sha256="1vnh6y9jr03cmncyka886wq59qnbpk1d3sqryxjd3d3hyhg7jz7b"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.13.0"; sha256="1fdqzbka0bbpzphr64sjabddr1a7mrk310mzjfrwd6sll54am9q8"; depends=[MeSHDbi]; };
MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.0"; sha256="0sjgjv48qdyhkmaiypqc6v1mi1hdrncz7ff1pjz77xgblpyhcxf5"; depends=[MeSHDbi]; };
MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.0"; sha256="13di3ljv7l3nq5li2qcb3r4y0d205hjl00ys0g26inp86qda5bnj"; depends=[MeSHDbi]; };
MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.0"; sha256="1qbhki6q2hl3vhyl1aaz722aqn5imb45qp7apypyf0qpy8f3jm15"; depends=[MeSHDbi]; };
MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.15.0"; sha256="0dg0rllh3q1pn9vlji5mymix5kvynwx16jhy8rxm0h7swz1bvkvc"; depends=[MeSHDbi]; };
MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.15.0"; sha256="1pq6gyv01hwhbmkyhm23j4gl68mdj2rs97b7iv0bfnyvky1qydw4"; depends=[MeSHDbi]; };
MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.15.0"; sha256="07iqhj76l8bpxjlfdpzd1nn1jf7mwlikdcnb8a7b4ffw5bcnss2r"; depends=[MeSHDbi]; };
MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.15.0"; sha256="1z9y7sraqikaxnkb4h3bx25fhm1llr0rzi4wg04nv8mjmy27p0dz"; depends=[MeSHDbi]; };
MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.15.0"; sha256="0i1fcasgmzsj4k1k7i8zgp25ywgkrpr9iwrl3r1lk6iwz70fq9pg"; depends=[MeSHDbi]; };
MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.15.0"; sha256="0cf9wklw5xkskz87d40d9sv26czxv1dnmzab9cj66viv7h8vzgly"; depends=[MeSHDbi]; };
MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.15.0"; sha256="00gfh6x8gbx77smmkw6bbqlmbaymzzamrqcjd29kqpa9npgvylnl"; depends=[MeSHDbi]; };
MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.15.0"; sha256="0zrs7m9582skcwqayxz2w73l16lv3fm0yk26aqi2gqvw75b5sn8z"; depends=[MeSHDbi]; };
MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.15.0"; sha256="1cbnslagmzm9gx12ay35ccbks9imra2yllgw79jagq38d78pdczs"; depends=[MeSHDbi]; };
MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.15.0"; sha256="0n44sin2dkyvz1jxqhaicdvmfzd5gbj7xbzvbvqw5w17k8gdxzj8"; depends=[MeSHDbi]; };
MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.15.0"; sha256="1jasx1fjwwpmas8xzysnnkphinbrdv5ykgispcck4gp5y6q253m0"; depends=[MeSHDbi]; };
MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.15.0"; sha256="0d2w94r521bfcgvd8zh69mmbf04yw6qzpzgi36a4an806j2x32yx"; depends=[MeSHDbi]; };
MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.15.0"; sha256="0477klxnxz637dics2csd4raw672db419i1793gm0zxaws3xv49a"; depends=[MeSHDbi]; };
MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.15.0"; sha256="1g0b7zdx454ckdhv89fwp6hjgmrbgjy83p75qx84lvj02cx57yb2"; depends=[MeSHDbi]; };
MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.15.0"; sha256="1ill5jzrwjs0n4sfidw505shcr5cvw11gkm646bkcv6g3nybrvkw"; depends=[MeSHDbi]; };
MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.15.0"; sha256="09i3qcvd14swdhgpv3j9b12zfvaimrml4w5ri9bk0s0w0s6c7wlw"; depends=[MeSHDbi]; };
MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.15.0"; sha256="1xya53rsf857vd7cykxz5xralmlcgn8mm5vsm3qnmy8ffilxpg0m"; depends=[MeSHDbi]; };
MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.15.0"; sha256="14w73m2qhvhrqpj4fs9ychc1zl6s7scl9baccbcybfv1n7lkxlwz"; depends=[MeSHDbi]; };
MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.15.0"; sha256="1mkpy2srkpgds8528jlaysvy3ch5kh9f06n5fyjrbdwnjq4l88dy"; depends=[MeSHDbi]; };
MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.15.0"; sha256="0qdimflvq01hvqfx715qxw32vah5v0a2k8l7zjkn60d4ck8ykhxq"; depends=[MeSHDbi]; };
MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.15.0"; sha256="0mrr8zx6hb5rd6j8514iy6kiqkirvr6mjhnfss3dcb3jgj6lax0f"; depends=[MeSHDbi]; };
MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.15.0"; sha256="0l6vnjvx2dw85g73d2fk3asvbal65iw7kilgxlcas89rwng0z7aw"; depends=[MeSHDbi]; };
MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.15.0"; sha256="1jyhrikbqnpd9wvdmlsxisp19xgl6wipznn9hgvk5h5my481cf50"; depends=[MeSHDbi]; };
MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.15.0"; sha256="1nkc51mnhqcrkgniy7j8s4s8llamqz0cidfc4n47jivfxprc369h"; depends=[MeSHDbi]; };
MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.15.0"; sha256="1jwlx1d36zrnlssrb7ppxjp0bnd75smib7j97fdbdwnshqlyqf3h"; depends=[MeSHDbi]; };
MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.15.0"; sha256="03r7792xc51vcha32qffbcqvphnn8fxmq4l01dgnc91pzzl4wiwp"; depends=[MeSHDbi]; };
MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.15.0"; sha256="0priqpr6kv5zvyb7zz1kmgpx0wkgsszd2wils1sixdjp91hmi13i"; depends=[MeSHDbi]; };
MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.15.0"; sha256="0w86nhasi0sd0zb8ryi33dh649k5jpwk1ya5nq98frzlz9d1dlj4"; depends=[MeSHDbi]; };
MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.15.0"; sha256="0cmr19xxydl594pjfhk0qniwfj62mkfnz943a67gdncdanyqgqf6"; depends=[MeSHDbi]; };
MeSH_Eca_eg_db = derive2 { name="MeSH.Eca.eg.db"; version="1.15.0"; sha256="0547q39aig8y860kapn1n5r8yv5vakmfi4ija5192nrxnpc1b0sp"; depends=[MeSHDbi]; };
MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.13.1"; sha256="1k9zzq5igi4dd92zfaniv8l4hr0b1381wn20ybnc1zl68qgnc6c4"; depends=[MeSHDbi]; };
MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.13.1"; sha256="0vvi9shain6wqsrs32hzhpwssw5wfsxcq3zq648amhs114slql28"; depends=[MeSHDbi]; };
MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.13.1"; sha256="0w4dsd2f85qaglqwb1ls94ncinsdhvaxhb8l5vqs7yg3ins23kam"; depends=[MeSHDbi]; };
MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.15.0"; sha256="1pdhkdn4navl5jyqdq9p1mb5yzmpjjngkv5br381pmiy5slg5psi"; depends=[MeSHDbi]; };
MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.15.0"; sha256="1d6cz0ldkasmdqzsk05ifxxg1qji2sb7dms31ibrhr4ds03y4843"; depends=[MeSHDbi]; };
MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.13.1"; sha256="0c3ndl270kd3v7az7dm3ng812nvr85srgxmazhxrfbk0fay962ln"; depends=[MeSHDbi]; };
MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.13.1"; sha256="1gavxbp6n5jgdhgnm4a2rqfh7rphk2k58pcyk23ldla2mbp2c4fm"; depends=[MeSHDbi]; };
MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.15.0"; sha256="0lflpha24bnlppjjv722nn679hz2fhvsff57y5i9jfkbliyq4ccy"; depends=[MeSHDbi]; };
MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.15.0"; sha256="06j0i8nj0093nagr6lhzzszmhdnxmn38c0l7gjdmc48byrpilx18"; depends=[MeSHDbi]; };
MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.15.0"; sha256="1kzxwp5sy48qa1aav17m8g7bakdc51f3dfigyp6dp0yc2g30wvxp"; depends=[MeSHDbi]; };
MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.15.0"; sha256="1ndc46ys5js4pn014dbm2432p7n0mzrjd09nhxpxd4jg7rj5b79s"; depends=[MeSHDbi]; };
MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.15.0"; sha256="1zs7qsx7bryrcqclmfj39vhl6qbvm0zyw4h2nh23ypapjl8kf81x"; depends=[MeSHDbi]; };
MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.15.0"; sha256="1yls5fwk4ch8rla7ry2l0gajhlqb26iz9gcb4sy9mymlnck4fy28"; depends=[MeSHDbi]; };
MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.15.0"; sha256="1lmag4gj8gps7wpnxdafkz5fxlswcfikgzslr93mzg38653ka1nc"; depends=[MeSHDbi]; };
MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.15.0"; sha256="1cvrcga9kcvznff22z89g7sp1jhmyh74wyrznc1i8l80dackhzff"; depends=[MeSHDbi]; };
MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.15.0"; sha256="0l05y7zi1jwj6m1mzfi8kzp1nfcp5q1nq7w9w4ghr3hjxv2mg7w0"; depends=[MeSHDbi]; };
MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.15.0"; sha256="1zppv4fr2sjql32k4mc0c6qdm5f97i9aacyfgrjpkhba5qrsyfpv"; depends=[MeSHDbi]; };
MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.15.0"; sha256="0ycihsvi9qvs5bd5qrm1m27rzhpiyf6vjfi4srs7lplp9z329z8m"; depends=[MeSHDbi]; };
MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.15.0"; sha256="13dwj7v6i3qc2gpsvf9ra9zz5k7plk5ldld43a1wb614bjszywb2"; depends=[MeSHDbi]; };
MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.15.0"; sha256="0bqwc68wkh9zbmrgx7rb2383axlbizg2m65qzr8s6zizqawm7lif"; depends=[MeSHDbi]; };
MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.15.0"; sha256="0a4j83v2hk6y8bxjyzb516d12h4ymhmwpj5cs03cf5xd9mwwbb7b"; depends=[MeSHDbi]; };
MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.15.0"; sha256="0aqqz0arrrs0pcljdhr30ixsbsh79f9ywifyrs00hfngnb2fg45l"; depends=[MeSHDbi]; };
MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.15.0"; sha256="1rgjayw05ggcqli9991ix3kmjv5fxiz7c3s5yy889libl70qhsqd"; depends=[MeSHDbi]; };
MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.15.0"; sha256="01w6z5krfikrsndj9qsq6vx6yzwcwhjs2bj3hmyjm4yyryjap2xy"; depends=[MeSHDbi]; };
MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.15.0"; sha256="0370mrz00k2zlapxrgf74m7sx3jas977dkp5x694b8y6c1qv6gc3"; depends=[MeSHDbi]; };
MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.15.0"; sha256="07hjznch109aslky2nhj1pk565mkcc6hr5jphc5njakcjflbwbdn"; depends=[MeSHDbi]; };
MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.15.0"; sha256="0gb5rcgg2653jbz0l6z8672vldb7jpq66y2kfmsj5bsw6s9xc7xm"; depends=[MeSHDbi]; };
MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.15.0"; sha256="1j7a4ghdzr87s2qnrjsaf3611wb3cik2irrr9mxfbnxqy4yxyfxa"; depends=[MeSHDbi]; };
MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.15.0"; sha256="0azkfrilcnxnz96kl5b1vmbw1yc6k4vjkqcrh1gpnkivlxww616f"; depends=[MeSHDbi]; };
MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.15.0"; sha256="0nz2chxy5wqp0jfmlgam73qvz2d2ypfqr2gjzb4rj9c5q20y75jj"; depends=[MeSHDbi]; };
MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.15.0"; sha256="0bsic8fhv7cyzlcfbis1rrkvf9r3f4735pg62ypczvdj2yx1pqag"; depends=[MeSHDbi]; };
MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.15.0"; sha256="0rkjl2m7sjdck3037aj69c37wbknjlbfcx59sb86mspv7q33fhpc"; depends=[MeSHDbi]; };
MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.15.0"; sha256="0w396xl2yq960yfw55vr0n4d7152w65lkd73jblwk5zqwig6f5qg"; depends=[MeSHDbi]; };
MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.15.0"; sha256="1dy218w8ry9v9yry5fvkkahdh73aa9gd3nlizdkfs901v2pg2fcp"; depends=[MeSHDbi]; };
MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.15.0"; sha256="0gv9sslvq0dgfgfl04kvhkyzqfi8napkwbisdkfg21x03id16481"; depends=[MeSHDbi]; };
MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.15.0"; sha256="1xcnjn70qbr2fmsw715wifl61021ghdyhil8nlylm3ydj89qwv6g"; depends=[MeSHDbi]; };
MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.15.0"; sha256="1l0ylw0i6900ikmlb8z1vi94745cbgj3imfj8xys9r8cdgnzn16j"; depends=[MeSHDbi]; };
MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.15.0"; sha256="0240iq4fdbi03s36pffbgm375g3ch4gqsyjs79wlhqg7bizvsr93"; depends=[MeSHDbi]; };
MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.15.0"; sha256="1qa7w7v301pi6lmd31afzvgrxmvs504054hq6rzr33ix5gm035ny"; depends=[MeSHDbi]; };
MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.15.0"; sha256="0s0442s9z09bcxdbskrg9myqjghl1mk1mysyl90dczv0mfl0hrqd"; depends=[MeSHDbi]; };
MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.15.0"; sha256="1h807bbzx1f916myi5p1xanvbffygdj2vghhf3spf8bcdm3avcgn"; depends=[MeSHDbi]; };
MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.15.0"; sha256="055pa2wjm587f2vik92x1fhrk23zhy85sbrbfq2zznikvfjlbf7v"; depends=[MeSHDbi]; };
MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.0"; sha256="1yr3s3b6ds75xrsg9srdkcg53d72wna2cnx5xn9932887125cybx"; depends=[MeSHDbi]; };
MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.0"; sha256="1c0xg9adpiwbwmwaak90pkh2vpakpvwjan2dgj89cxv0v2g5kn7q"; depends=[MeSHDbi]; };
MeSH_db = derive2 { name="MeSH.db"; version="1.15.0"; sha256="165vdjc9gikwnyvihvkci0n5gbxyna962yiyi21qd4csvin12qzz"; depends=[MeSHDbi]; };
MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@ -268,7 +273,7 @@ in with self; {
Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.10"; sha256="1gaq6dnxb83gnlcc544clljgvxwjw98idbq3v6ipqqlx3rdki2xn"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.11.4"; sha256="1wkchf4hz484xld7fxzcmwc8mcbwzn83fz0hamg1mrp3x45djbmx"; depends=[AnnotationDbi]; };
PFAM_db = derive2 { name="PFAM.db"; version="3.12.0"; sha256="1s9gdyqxbr944ksr1n7ik15qmh6sq264z3d77iyjvbrba9kx0hpc"; depends=[AnnotationDbi]; };
POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@ -293,18 +298,18 @@ in with self; {
TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.11.0"; sha256="1cwdj80yvpp1nv21jpyixlh2d50l201g50f08n6m0dkz6g7cw3v0"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.12.0"; sha256="1k06p4jk3lw8xkn31yjwmwk96rkrl6wqq3rmc8bxlbrdi99lh09c"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Btaurus_UCSC_bosTau9_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau9.refGene"; version="3.10.0"; sha256="1v7q9jaaj1n2vabjj6ij6pz0g89nqlyy4y4g65irz6cm5mvik4q9"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.11.0"; sha256="1b359pb762xhw64lnj9xfn6v6d4mjfsymmp6y5m1i4rrxiyw26q4"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.12.0"; sha256="0vkra4f05s8nd3xvma1dw6zk5mn7yvnxykx1cs9zad041i1447m3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.6"; sha256="1aq4jhn2c67wibq02l8drrjscmicbj6z35d0jksq8mwhz8k30zn6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.11.0"; sha256="1gpm060wmlk1dm8s7p61afa0pba70zkamfh63gzcbdai5v74rkzx"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.12.0"; sha256="0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.6"; sha256="1isd4idvh9flvirrq760cw5lc1nwqjx0q76p9dp01wbbbsb3rfnk"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Drerio_UCSC_danRer11_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer11.refGene"; version="3.4.6"; sha256="0p5pr0fq1l9bp019w2214szf78y3nbw0p4819jcnba1v50y3336l"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.11.0"; sha256="1wxiih08p52bmjh6ywnbndvhz45fdsd1ixx1j7k181a8xd0cw47q"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.11.0"; sha256="1bvbbw7c96jpzg8rz9gvkq4pf74bz3nj28br747r0wsll5lk398s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.12.0"; sha256="0c9msvqhx7zcxyhfj9h7rmlwmax1n48cwz1c0v58djcms6bqq2m5"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.12.0"; sha256="1fl0jnim4lx1a4b82b9nrgmb91najwhggqb611axcqp9bdkkhw1q"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ggallus_UCSC_galGal6_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal6.refGene"; version="3.10.0"; sha256="0ddibdn6shlhqfmlajnq754z4vad7gi55vb5y8j89nc2k1sc5a3i"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; };
@ -312,22 +317,24 @@ in with self; {
TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.10.0"; sha256="0lqir16l8wphhpaizmvgmjzk40p90rzgqndgvbms7ickinrpg59s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.10.0"; sha256="1d1gvs6877649zwgja1z5x0mgci2kirbj7pzhb22xyinif3bhz26"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.11.0"; sha256="0plhdp4rjc79rq5gm81vb7b2y1hj036mbfafm55ixf2ggahibdqy"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.11.0"; sha256="1l6i064s8h9xp0f9n5cjs8n0q4fx1x70mmhzix006l3zicajpc7d"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.12.0"; sha256="0465dma4q6jkyx23vkq4yz252mm1ksr3186cbjdqvnang57m5lc6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.11.0"; sha256="0w94r2g1x9zgdbz8mkka41264q3ylf88m3rll594nn0h5g01g0yg"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.11.0"; sha256="0rmmvwmh9dqvjynka89jkdg8rnmr474adxsivwbpkxj371gyby31"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.12.0"; sha256="036g5zn9rzy8qivb1snhpancsz1z60i3r7z3g91bgla4jpgwwjv6"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.12.0"; sha256="0yypv9iqn4i36hnvcr2lsfgaabl8g2pm72ya4psvia261jr2i12i"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Ptroglodytes_UCSC_panTro6_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro6.refGene"; version="3.10.0"; sha256="0z4lq7wy48kkxnx29zmrbmrq4qjrj3digwxkw3x54qq80nvzxiza"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.11.0"; sha256="0hlh3c559m4ny3b5sfdk7f8rardai13p41fx2p9p2chd95s0j3p1"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.12.0"; sha256="08kf9kmdvifcbz0lc8paqp10x272b0f1jh6bj241ii455xsby2zi"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_ncbiRefSeq = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq"; version="3.12.0"; sha256="1gb8l88z1xiyc1r8hvv4kdahd0py2dr5k0zizsrfh013p6q7z5yw"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.6"; sha256="1piqli0wdq3r289is8lmijnshm8rmx7rphp2qfymlvc0jmvgs9wr"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.11.0"; sha256="1ikqammkzqdza8948jwdr18mslm59izni690r2lm04lrpmg4c6fh"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.11.0"; sha256="0z1blh92w81mwv674fng5m50gzsy9pxymmy1q773h54k9qlksvy3"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; };
TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.12.0"; sha256="01bl7zdxyhhg4706jhi7271fs09riixkyr3x0bancl1fpzwszc6p"; depends=[AnnotationDbi GenomicFeatures]; };
XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@ -337,22 +344,22 @@ in with self; {
agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; };
alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.11.2"; sha256="1f2lzva0w841655fq9f8zvaj00w9h965af2nki1b7258jwal857h"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.11.3"; sha256="1vl28gxqgl48s1aii3r0y984vdic9g8x7y17k85cgv85j45n1dv6"; depends=[AnnotationDbi]; };
anopheles_db0 = derive2 { name="anopheles.db0"; version="3.12.0"; sha256="07xdk002a41yj79d60a63l5wmyyz2x9py89nh2hnsqm2cvx90wk2"; depends=[AnnotationDbi]; };
arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.12.0"; sha256="01cg5g8ikgim46s470hp7g6pnln8szwr1pmpysyad3w4ipd03asl"; depends=[AnnotationDbi]; };
ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; };
ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.11.2"; sha256="17kgw3nps8gh2i2wh10wz1zjzgz5sz5vyf28y3s206jnpsnmglss"; depends=[AnnotationDbi]; };
bovine_db0 = derive2 { name="bovine.db0"; version="3.12.0"; sha256="04mzghsr386fs3wr97cdnzclcynxpmmj3zklx4cjhl9q28jvk1nd"; depends=[AnnotationDbi]; };
bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; };
cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; };
canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine_db0 = derive2 { name="canine.db0"; version="3.11.2"; sha256="1rlhpfj7gapjbzcya0k1cdiysxmp6r3wy1vh55j01z9v4k4lfqk9"; depends=[AnnotationDbi]; };
canine_db0 = derive2 { name="canine.db0"; version="3.12.0"; sha256="09y3l6ilc7r6m9ghvfsz5xw1m9xl608x9gwbfz9rq33dszvmmssd"; depends=[AnnotationDbi]; };
canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; };
canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@ -362,10 +369,10 @@ in with self; {
celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.11.2"; sha256="0xgj8fjcdv6xswg6y4m5lqh01s1scinijcxvmibl6sw1c3xn7g3v"; depends=[AnnotationDbi]; };
chicken_db0 = derive2 { name="chicken.db0"; version="3.12.0"; sha256="1qsnbxd79cvwkj5883p2ya57afkknsnyps11iy0qhl5jinvywi6l"; depends=[AnnotationDbi]; };
chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.11.2"; sha256="01lhhzmqiv5yjnnc4msiqxwx2nbg19j6dbgvph4l69a75yfs2fg7"; depends=[AnnotationDbi]; };
chimp_db0 = derive2 { name="chimp.db0"; version="3.12.0"; sha256="05hvlfikgbbhc3a6h2bf7d3n7dqs5jk6qbxg8pk7bcbj17xndacq"; depends=[AnnotationDbi]; };
citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; };
@ -388,14 +395,15 @@ in with self; {
ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; };
ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.11.2"; sha256="0rnnjh16grl9d9jsfhm6vi6898aziwvr56rp6zc7yzz913hkgwkj"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.11.2"; sha256="0naxgp5q6di565rpp5k04lfv6p2vw9ski7m75f2nk0ksdlpywx9f"; depends=[AnnotationDbi]; };
ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.12.0"; sha256="0by1l28is01a5pbg5clci9vk54nihfbddi3ffn9rav1673l3qm1x"; depends=[AnnotationDbi]; };
ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.12.0"; sha256="0zyp0vk5kvb1jkmj2a5qmylh9m33a1lmg6vm1k5g7ln9fah130bg"; depends=[AnnotationDbi]; };
ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
fly_db0 = derive2 { name="fly.db0"; version="3.11.2"; sha256="19323k5pd5xa9m8cqykyig0gzwlk5wcssi1k8drbvl8f2jz384bn"; depends=[AnnotationDbi]; };
fly_db0 = derive2 { name="fly.db0"; version="3.12.0"; sha256="1q4i4hg3aap8553jsb4w02p3vbd3pc4w5ry0cpicd3zh1w7bn846"; depends=[AnnotationDbi]; };
geneplast_data = derive2 { name="geneplast.data"; version="0.99.2"; sha256="17smdm98djj9n7h6w7wy5k5q466zn9kqvs47qvf8kdmahghrdhii"; depends=[]; };
geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; };
genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
@ -527,7 +535,7 @@ in with self; {
hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; };
hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; };
human_db0 = derive2 { name="human.db0"; version="3.11.2"; sha256="1219w285fjpws76bv8q1a6c9qv8rkfyaqqfnx0vgf0nds75msc5y"; depends=[AnnotationDbi]; };
human_db0 = derive2 { name="human.db0"; version="3.12.0"; sha256="1szqvcns639cw5l727bhla2blz36x0i6xkdzw3dl5nwm0p2qiy59"; depends=[AnnotationDbi]; };
human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@ -565,9 +573,10 @@ in with self; {
m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.11.2"; sha256="01825x7r26a6gp8lhd239gdrg8jxnfsl5cdffj1z0d03s4wbjnv0"; depends=[AnnotationDbi]; };
malaria_db0 = derive2 { name="malaria.db0"; version="3.12.0"; sha256="1jbxvm3v8phyhqywm5plx0sjdgd0cn47fbsqxgmpmzyav8kilanz"; depends=[AnnotationDbi]; };
medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="0.99.8"; sha256="0aywrh84a0qcgrjc4zp7j73xdb8fhgxkmsly0qnl2fwarmzzvlkj"; depends=[AnnotationHub]; };
mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; };
mgu74acdf = derive2 { name="mgu74acdf"; version="2.18.0"; sha256="187k8y1dnnyw926h090gmkk1081sa91fn113lysll3460dqn3ylg"; depends=[AnnotationDbi]; };
mgu74aprobe = derive2 { name="mgu74aprobe"; version="2.18.0"; sha256="0813s2w5s9ahaqn91mkwzfckclv5jdphq17j2qwyzd4xqyxrmsbi"; depends=[AnnotationDbi]; };
@ -619,7 +628,7 @@ in with self; {
mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; };
mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.11.2"; sha256="0cwacdipbw6j1nxwjgjryqw81vwixcgnrymhva498g22nid8j3vk"; depends=[AnnotationDbi]; };
mouse_db0 = derive2 { name="mouse.db0"; version="3.12.0"; sha256="0lyah05kdgx5sf2hn6p6ac8b922qg1lf5m13rpixvv6362cn4wk3"; depends=[AnnotationDbi]; };
mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; };
mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@ -656,26 +665,26 @@ in with self; {
nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; };
nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.11.4"; sha256="1nl54mxhfggbsyd05jz6pn7g9arb6ikv05dibhwba3vhf57kny8i"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.11.4"; sha256="1yhrnssmdjlh3hgiqii4j0bnvpp9bs1z9vi1qm7v2cj820pn7mck"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.11.4"; sha256="1ypfb1ny0s23mz8958cvbglf4dgqackw4ljw3zhx5nb4ad3r2r5i"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.11.4"; sha256="1ay2sv4hbiw2g7qy9m1pmpb8n9xhfjj7y9sdcf5sii8j7yjk8yy0"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.11.4"; sha256="1z43kn96mq8km31ihcjhswnd67v31f2v0ksb65vhhhc3qxfgxs6c"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.11.4"; sha256="0sn75clknjpii8h2lw9nn7psswcxn5g3gy1kqafbgsy9bp63zycc"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.11.4"; sha256="0s1gp827h1m99xwmr372d846gaw3y2dwa2hdarp63621jyyh6d8z"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.11.4"; sha256="0gx64w3fwf8h3mdnfwhsfylf12lp4iam4mhlr3mcc81dwgzf67dr"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.11.4"; sha256="1nri5cxi619iblhczz637crgarqxncvap2672fgb8snwrzqvdsrp"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.11.4"; sha256="1p8bid5nqr9ihl1cyq1i8chpwx5mvdx7610qjwj7in22l2ribbi4"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.11.4"; sha256="0mg2098sss1d2gwdx72qssc5xpl4p7smfdry508hfpm4f1dr91k0"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.11.4"; sha256="1sss35risk2gzb5yn3j4x2dz4pl98mw0z131a0p1318a0srspihj"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.11.4"; sha256="0z4mddwixk4dwb3jp31knqyxg50vcnp1wch6d5mzblg6jmwbc4w7"; depends=[AnnotationDbi]; };
org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.12.0"; sha256="1cc7iy9wsrcvz94p70gvkacwmzw42g2nxpwyzlcb3f3cc5a8kzb2"; depends=[AnnotationDbi]; };
org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.12.0"; sha256="0ggv68p5ly1pbxai62mlajkgyxh8wc5as5xikm03s7sqj99fl9zj"; depends=[AnnotationDbi]; };
org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.12.0"; sha256="1brx8m6cpmkkaf3f1rmxb3payln342cmkhbp4z8mx6n82jjnvx0l"; depends=[AnnotationDbi]; };
org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.12.0"; sha256="0nq4g94jp1pg15lrl430iq7545lgxp2c3af03cq77rx2b5pfn0im"; depends=[AnnotationDbi]; };
org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.12.0"; sha256="0w18zxd9pbwcsmz1ilddywhd225mv3975imq0kihc84hzlca9gh0"; depends=[AnnotationDbi]; };
org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.12.0"; sha256="1mys35qrvjff1xnr7xrgf9rmpamdia9p54p6y73bhxs7q9x6sl7c"; depends=[AnnotationDbi]; };
org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.12.0"; sha256="0kay0vsbvymrva7d11qq5rwi67lfmprrpi1zrzrgdx24xnv9fdkl"; depends=[AnnotationDbi]; };
org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.12.0"; sha256="0c4p6jr83k0gm6pvn760yr8xf33wggrfcr6fg7a42a96bcf817gs"; depends=[AnnotationDbi]; };
org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.12.0"; sha256="1rali3pahng83lakv80bp0vi5gisykbc4y77mx1ap7hiv9vnyaiz"; depends=[AnnotationDbi]; };
org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.12.0"; sha256="11240bskl0cmkrr4238gmkbb0kc85dmb5sv5f3mlg77a4qhj4wm4"; depends=[AnnotationDbi]; };
org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.12.0"; sha256="1fs9680g03w9r3jjcn3nlbzn2aqh6fiapnamql18cypc8x9sp8a8"; depends=[AnnotationDbi]; };
org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.12.0"; sha256="013c69b7h2vcv6h3jp0a26p9dkr1wj9599bh34xiyfns1z242lvl"; depends=[AnnotationDbi]; };
org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.12.0"; sha256="053cg979pwkvas8sip0a5q6rrbkzh5d9wv4420r3mv4sdg7q3kfc"; depends=[AnnotationDbi]; };
org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.11.4"; sha256="1bp2bp4b2kmfia7wvr4gjncwc2n5ya0y2wv5p6lad6c7yz4f67c3"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.11.4"; sha256="1xhzdkbml9l5qnmhkfn5kfbjqn5fqjhnh14z8ldy4c7v3cwxdid0"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.11.4"; sha256="0bp46dc5md7vw9j0y2cim6zlvwkgcbhaiqxl89d6xalj0q9wjqmn"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.11.4"; sha256="0cj5050n86nw85p0h960qnhq82a94xs14zf67k3qwqqv49x8hvaz"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.11.4"; sha256="02k6gg9537d7nmb9pjmz6ss82j9nbmiamckaynv002vlkkxg9lps"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.11.4"; sha256="0qjf6zv00k0ial9c3vszb4nf6i11qqjmg9njfp9rkla9c73pihwf"; depends=[AnnotationDbi]; };
org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.12.0"; sha256="0vka0m5x2g6cw2p0zkk602zic8gzqsb23p622d0v8kwb5zpmb7c5"; depends=[AnnotationDbi]; };
org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.12.0"; sha256="1zvlnqyywkp07nkryzlmykbzdisnbafy0i9ws9slq8dhjhacgxj1"; depends=[AnnotationDbi]; };
org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.12.0"; sha256="1ia6bbfkcl4f9hxrckbpq46r5i3l9zf8bvq4xggm82gwc5bn9pab"; depends=[AnnotationDbi]; };
org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.12.0"; sha256="1vflhhgg59gdnidcbn8vkia87impcz28vv98i17821rhkw1i8fss"; depends=[AnnotationDbi]; };
org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.12.0"; sha256="04rvpx63s45dx5k067q5fhrqs34s4gcb3xv0h0ixrg76ns1nrmbl"; depends=[AnnotationDbi]; };
org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.12.0"; sha256="0chr3agh0q79m7ang9vdf87p60k1kxcjamnwxf9gf2avrawlp05m"; depends=[AnnotationDbi]; };
paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@ -853,7 +862,7 @@ in with self; {
phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.11.1"; sha256="0g7mn3wa9l9hpks828n82rads1ls5mjgh6dfgk3iw1nrl0ylws4v"; depends=[AnnotationHub GenomicScores]; };
phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
pig_db0 = derive2 { name="pig.db0"; version="3.11.2"; sha256="12pidwjb2wjzcz72m8jcp8spr6nkxfhkl75qr5b062pyw4mkrp6r"; depends=[AnnotationDbi]; };
pig_db0 = derive2 { name="pig.db0"; version="3.12.0"; sha256="14v6sjpgk2qxkp5mkq6wbdb1wv2hv8xmmhsrbsrnhf3iflqrq41p"; depends=[AnnotationDbi]; };
plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@ -882,7 +891,7 @@ in with self; {
ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; };
ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat_db0 = derive2 { name="rat.db0"; version="3.11.2"; sha256="0v7agg9rx4fifqp7p95lxh0fkwx891w043p0qqqpfksvrbshx13y"; depends=[AnnotationDbi]; };
rat_db0 = derive2 { name="rat.db0"; version="3.12.0"; sha256="0p9jnh0k379x6agqphi9lwmznvv8nv0k1s1qpnfh4d801pdcnk0l"; depends=[AnnotationDbi]; };
rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; };
rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; };
@ -890,7 +899,7 @@ in with self; {
ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.70.0"; sha256="05wc4fp0faq6h3kq5rwafnips043as31yq11mrjngfxvf5i10srg"; depends=[AnnotationDbi]; };
reactome_db = derive2 { name="reactome.db"; version="1.74.0"; sha256="05ip70gik4f5r5bs36mkdlzcrxgn39inp7430j4kcqqa5j4svv8z"; depends=[AnnotationDbi]; };
rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@ -904,7 +913,7 @@ in with self; {
rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.11.2"; sha256="06vq8zzy5kxp9winq2vxw5b803dbhb4sh057k9rl2jy32vmblm45"; depends=[AnnotationDbi]; };
rhesus_db0 = derive2 { name="rhesus.db0"; version="3.12.0"; sha256="0rcj9xml2rdhyz77iggnimijx4ia0nwf9sm8wzjjlwlkb522gvi3"; depends=[AnnotationDbi]; };
rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
@ -943,8 +952,8 @@ in with self; {
vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.11.2"; sha256="0w124pn96yvl0ksb0bncwxdhfzcg491s60rfla3gr17pfg1h2klv"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.11.2"; sha256="1l9pi5ayrkrq5gswms33z3ldip3kj2bn5pj6nmy1dzx9i4d0llnr"; depends=[AnnotationDbi]; };
worm_db0 = derive2 { name="worm.db0"; version="3.12.0"; sha256="021fck9gd3jy1a15n4x3l59qfvw0xr2dg0v7cwza857nhrbh7y5n"; depends=[AnnotationDbi]; };
xenopus_db0 = derive2 { name="xenopus.db0"; version="3.12.0"; sha256="0ml6skgvhjr4fssnc0x6rz1z6qg1lnxppw7478g3233cfmw8ymfi"; depends=[AnnotationDbi]; };
xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@ -956,7 +965,7 @@ in with self; {
ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.11.2"; sha256="1wbywd8lbbgndhyy0nwdxc91cq5s90q67q6wpdikzc5m7px3v4qx"; depends=[AnnotationDbi]; };
yeast_db0 = derive2 { name="yeast.db0"; version="3.12.0"; sha256="0mgyb650gs1bfnlvd115jhj3ypyfmwql5dj864sv9svxcdysc212"; depends=[AnnotationDbi]; };
yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; };
yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@ -965,7 +974,7 @@ in with self; {
ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.11.2"; sha256="1lvkxhql6rm3bs2pszk0d6ib8xjrhqmgznn9lnpn0v2lw42ld3vf"; depends=[AnnotationDbi]; };
zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.12.0"; sha256="1rv3x6h593caw2ml267803qm14nh34dfn301pzznbf6zvd61v6dg"; depends=[AnnotationDbi]; };
zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
}

View file

@ -4,397 +4,402 @@
# Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
{ self, derive }:
let derive2 = derive { biocVersion = "3.11"; };
let derive2 = derive { biocVersion = "3.12"; };
in with self; {
ABAData = derive2 { name="ABAData"; version="1.18.0"; sha256="08lzn9342smxr4vidy81rszgcbipk7l8a336g4iym4bc9fa6sspb"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.30.0"; sha256="1gr0r2g6is475bcz7y1h00wr1sklky1d061mc70i7hf1fgdp1a0z"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.28.0"; sha256="09ly5gas0nw92ibyf1ngcvz78yn4dn3jc321y61jmmchxipb1kjm"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.24.0"; sha256="121x37fnbhplza8ndj04zy04841c5mz2zkfh7645k4sq2qqk4zyg"; depends=[]; };
ASICSdata = derive2 { name="ASICSdata"; version="1.8.0"; sha256="1xg0gbdv8pkbpy0939fxfgbkdmpqzzqbfc14smyr6qjbw7zpbr4k"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.24.0"; sha256="1l03mk6pdz28dzyfid5whn08qkxyfh2dp6b23rsl60ycgb9y41nx"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.22.0"; sha256="0kkvf5mq223y0drl9xbi7rxxq4v03380mq7ddwpx76jz9vac9gz2"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.26.0"; sha256="03xpcc9x0rdzndrdb73917iqhs2xfn4x3ixa4bjj048zvbdm4b0y"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.26.0"; sha256="18c5ydx45gf16fdimn9bzz6z1w3x41kvcsv9b1hclj0bxsym863k"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.26.0"; sha256="14pcmka5ifpmv54mg78gggk8f900absdmwpm0y2qxpv4k19fqr0m"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.28.0"; sha256="0s079zxd4ik20z5l9zl27zmaxxy0wmc9w4c892mqr1qk8cdp4i74"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.16.0"; sha256="19nfx345k8hlllfrhs71bvbnzg3lhr9p9lg4z5lr73kqpxfgx1jc"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.18.0"; sha256="0ajzzvpamzk6cpdx5js2ccbhk44wmagl3jxr2h48x3p9cklnjb9l"; depends=[]; };
AssessORFData = derive2 { name="AssessORFData"; version="1.6.0"; sha256="1qcv3a8pv3kzdhi2bns7j4jn9mrgfpjh2mrc6q7y1lmgqi53knq8"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.26.0"; sha256="1lncaw5hh42rx3f145f5d7a9sngnr8ssrip9jbi3c6qgd3g5xiir"; depends=[beadarray GEOquery limma]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.8.0"; sha256="0vlgihw522dlkky0jpb01agxyqq394w2gahacihzlc22dc83iz6d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
CCl4 = derive2 { name="CCl4"; version="1.26.0"; sha256="1p0jly4v6mck2gnfy09alk57fvrvls5184p7vknn70fcjq02ivbf"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.28.0"; sha256="0cbrm1hr9rvv2qjdxzjy99d5jbspwiyva9zmfy8nqb1kz17nkrh1"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.8.0"; sha256="0r5q9j8cb7s29dpf3nd5hg7wl07rnfzk1mxmrh2hkkslzawrwrpy"; depends=[ExperimentHub SummarizedExperiment]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.24.0"; sha256="1ay0xh3i13aqp0lisczm8jhvk13ld34jx2vc8jvjdzsxpfv5x7v0"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.16.0"; sha256="0fqmxz5jbv6jygbmq95bdyfxcyri6djsscdaxbxkfv2vq3wml1ig"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.24.0"; sha256="0pxkmq2xrq4ka7i5rnfvklilddj65m87f04ivh9xv0j19w51rxfn"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.24.0"; sha256="1a9ciia5g6w34k5mlnssn8r97v1v2bv9qmar4aklif5rnhkwr7mx"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="1.8.0"; sha256="1mcmbpi9wl5cln1wj30m5gkvfdj74kij32vfvvjvl38kw1jc4zyk"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.20.0"; sha256="13465kiz3v8vyb80374lj0awfb5kw1z0rixin46nbi9j1jfsysmi"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.14.0"; sha256="1wc3ck21xdqcrv85jhfh07yvlhkw22xc567lj7yv8vzy0j68gvyv"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.20.0"; sha256="135z6wkrmsg9bwj27by6x5850bpnwzncxvia1x8ggwqxnis0fl9c"; depends=[BiocGenerics GenomicRanges]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.8.0"; sha256="0lx1yfimxg032hapdx6i6n11fjv1dmcd5a9d7id1h9cgm2qydq1w"; depends=[caret]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.26.0"; sha256="0dzxdha2fay07rc7m5wj8aiggmn7qfifjy11ydqql4sfxw7l4wp1"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.12.0"; sha256="1yzy0y40ahw5p8ia0r3r5ns4an2n9m91zb9ypc25cjasgwpqca77"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.26.0"; sha256="1bd119mh0r6m07ni2fb14dyambdzx5yfpy33n9r6f1mkcb39j4gp"; depends=[affy hexbin limma qvalue statmod]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.4.0"; sha256="0j8xb2izl0gxwib0srk5bj4gdavi0czp4hwg2w61z7xgdpgqra33"; depends=[]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.24.0"; sha256="0agb5xm7fm8cs9lj5yn9zr006zdhyzhz5q4gc920ksaqn9c238nf"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.6.0"; sha256="0adly63fqnq600if81x0wivv792n6s33a65gjfkfjwvhi9n5lwbr"; depends=[ExperimentHub Rdpack]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.20.0"; sha256="07i403mxx1zr7j7bkgmigl0s7ijr6wfnci1x56z9qy0jrrd21zpc"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.18.0"; sha256="1vnb08lzzm5x23j8slw939al6shb83zv85y6wzyfil2szic51xr0"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.28.0"; sha256="0d2jv5yni681a3rb39qgc1n8klr0lbwilkrkvd9wv0qq7glv9ba1"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.6.0"; sha256="17k4cgpqkl47i2cp0c4nh22sz1w54pal16dkvzvrm0vzcvzxiwrv"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DREAM4 = derive2 { name="DREAM4"; version="1.24.0"; sha256="1dxsyzv5y4ivsg078j2m3zvv4h7c8rhk59gf3ndr8lcwp6a7xsim"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.24.0"; sha256="1svjk5kcjhy23b1i5345y6j3mzdv8lxl4bzm60dcghz4inzbay5y"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.20.0"; sha256="0r1006as1vnwpzf42ps5ca2xbppfb8dcckkiwcajj1lv3g7265kn"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.26.0"; sha256="008msb4785ghcg0gqyxf999l58j89cvxbkci4n1z6lnjf2gdvl6v"; depends=[EBImage]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.24.0"; sha256="05qc92cwkfwc7s68f81nd05xyl890m0w0w31n7pz8r3vxf9x09cy"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.6.0"; sha256="1gw99mgjmjv1fq7qg0g60r3x4zk0gp4d2zlm9p81avrz8gifyglr"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DvDdata = derive2 { name="DvDdata"; version="1.24.0"; sha256="1z5ijx56iygk0qbi2sb4r4rk42m3pblnig0mc8fh51mrqf6c4f6y"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.16.0"; sha256="1drkhw0a463b1bdpn0r3yg57i1ll076c334ikjvc2bd191d3ilnd"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.12.0"; sha256="098hdvcl340jhy1vf5rcv28bvi6bk6pfwblck7xsmhdshl9x41mg"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.26.0"; sha256="06bp5549iisaagl00xnjr6bhpgvkiybjgnwsf8i2fqs55dyvrbba"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.24.0"; sha256="11arnks0p6c6rx929w3h878imxlslla8xnd44lqgzhal73n22ks2"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.16.0"; sha256="0r6zrgrd8222rr4vk95gxanzjmdbj48rdc1wy3ld1h6rdjb8szyl"; depends=[]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.24.0"; sha256="0hlqnsxcv6jbnswwyqfnxdgw7g2dygxcv81brlnrrw4whb3v12mj"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.24.0"; sha256="16mynpadclsciw7zayp3lgahzg1mhi186wjn160dzd2sasz5syw4"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.26.0"; sha256="0dlhr5dagddw399w64jx01pfbhzx6j2rldpqrpxa03n1fjr5qfaa"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.6.1"; sha256="1hkw1mg60wf64lrq3h26x2zp0mvhriai9d46mirmkfng4y8ka4xy"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.16.0"; sha256="1j1hl33vydrhgii0fam66nywycg80hi845hndhcv5i9l5siiiwbl"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.4.1"; sha256="0xyji58czc2y0snrydgn23q4z80zabda67jfaqjpwz0zpjh0hwzm"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.14.0"; sha256="1b2h5r4pv4z8v3cb2sw0wg45rb54gqswrmvk4jvwwzypfdd6cvfw"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.24.0"; sha256="09305nfvwn4n4xzvjwcyiwq49xhgajgmr7r86yypmx643r86rwai"; depends=[minfi]; };
FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.21.0"; sha256="0kcgvfks2y9jiljl9a2s13ryljv92q2h656jfjkqmfw0zrlxx244"; depends=[IRanges rtracklayer]; };
GGdata = derive2 { name="GGdata"; version="1.26.0"; sha256="03klh3yczfba83yh7350jwn1dqq1bi8lgx9h1bqilhc36plz14k5"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.6.0"; sha256="02pjidn3sz6z6zy8p8wp5nmin5cmjglddq035bbxzxbx6npb7mxk"; depends=[]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="1.8.0"; sha256="1cwgrfyjjz5l33qcya2vd9c2d89ma8053yz1yv5z1pvrfagdanli"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.16.0"; sha256="0s5nf9qi940qx8vsmybva0v4yphg4s0nm8if0p2ipw4ignkayf09"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.24.0"; sha256="17z2b7waggy4xv3bx92yhv53sgc4w7im5rq3mygdb91p1swqsgmc"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.26.0"; sha256="0az9vxafbdjm01ysz4zid8iglgddl81kfxg70zgrx6sal47kc4lz"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.16.0"; sha256="0df0231l3cpdf2n2bcm6wjs7nmbl96h4rajicba03r1a92ii0v6b"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.4.0"; sha256="16w6707dhw260m0f1n7nxf4k3g18qn3l7nmg9wqkdiwlczwhx8rz"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.28.0"; sha256="0ygz008dmhhd2sr2qpvqcha7jr5k3mr64w25pbjil2gx2lqz8lbw"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.8.0"; sha256="1kj4hkl814a69pz9m2ifim14nwr3w6sw6mhwiv7y4ifv4hbvyd01"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.26.0"; sha256="0mh6v6g24jm966d0nsrwcv52km72qi8jal6ann6qfa0qwvcbhr6m"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.28.0"; sha256="0gxmg00xaafq3yz9zqqsyn19p3n8rlmy6q623xzssn7nvgggffsi"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.8.2"; sha256="1hfh9k9782irs2d7yp427x9x85mn4d6axvil9n7pa8a0s8b1f013"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.1.0"; sha256="1vlq98g07vx4vx59mrclw3cimwvdxn60r510jfjnlb5nky1pasnj"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.8.0"; sha256="1d28ca12m0qc83f3jpd9n4h1d71vgfix7q770hg84aljx9xifmmc"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.16.0"; sha256="0snci97jrgk98yyjjbfm9659fq2iiabfpdx08iriv0lgf1k674zz"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.10.0"; sha256="09xacn52wxgm31l9vjbbba19f975b8dwxhxv2bfjy61q73qsfxnj"; depends=[ExperimentHub]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.14.0"; sha256="1gx94wps1cb0ma0gsmnw9vcb03wv7f9m4kjmaiwj1p3awmvjlzlp"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.8.0"; sha256="02fsfq716vfxcwczzdrarwqmmy739mxsrdhr13zvprppa2jw9mji"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.24.0"; sha256="1sr250gypp2wyi12jq0k72w3galbi3sq00pgsq34habngr1ladzp"; depends=[]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.0.0"; sha256="04wr6phglmms6s8dnpr03kdq3dba8vipx5w3qp8fkiha3f9b3pdi"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.24.0"; sha256="14hqlkyz4xp1jmhgmfy76dw5f3la2xcsz6pzdr7jn525bwmh4np3"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.14.0"; sha256="0jgg1xlf699q89bx7scpibr905vi77yk59290b724y2qrimjg4na"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.16.1"; sha256="0jfvx364zf5kbl5l8iff48ng9732d8c598n0b2yzz9glkja5w3wb"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.26.0"; sha256="0s4b2j78ni8nwnzh7xlj1aacq522awvlp20isrx25nhnmnq3nbjn"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.24.0"; sha256="1gmk5mknbqp3h21cqqqrhglpnm5f04ifliv46bns1k2rndx1d68c"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.26.0"; sha256="0v6y52azp4a2x356kq2hqisnn581jhvyi02av4zjnxvr3h6qbh7j"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.30.0"; sha256="0nrjbr9qnqnsmbn3i0kn9zg0m216f7xjm4jwpnlpcwacsz3x355r"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.24.0"; sha256="1scrv91vy9i1fh2r15qkr1f0j78v211y366271ivwbf1r361npdn"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.16.0"; sha256="18sna9lly7yvgn317lpvgv2b4xm1cdv7lwcrvr3cf47mbwh7sj08"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.18.0"; sha256="096g9z3kmivn1vhgrz7blba0w5fchcivxd6zr132q24f9qciggyk"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.8.0"; sha256="05a6lf3vxlzy91d90mmbnzl2kk30g2z3ql96n404hiplq0gp888j"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.26.0"; sha256="1brsghk3883f257v41kxqx7xmf6rmcvmhzlwx8527i7nnyk5yfp9"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.14.0"; sha256="0wyaccdm6sj8qlzqdg44q45icnflnwrkajjav2pbpfi6wf055xna"; depends=[]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.26.0"; sha256="0c4bv2dq153mg2a5rjshcmsbjl0jjx8ic6b8w6bjymqj823r73d7"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.20.0"; sha256="1vklgv9ajsdmzmrqz1iah3bf19x91y8nzxxbfh4lbiw8si2c2rfr"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.24.0"; sha256="0w27kpa8a96sb94wvp801yll2g0cwyvkpfizfgxfrcd9grznwcmm"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.26.0"; sha256="0baapfr8w4718qh4kfx8x8jfi4qaif4blzl27g76zyqcm801y13m"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.14.0"; sha256="1l42jqdi25g3w08aiivs3swbk48sipfhc9ddpal4fimylr453w9h"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.26.0"; sha256="1lwzcy6ln722ixrcrrvhardkxpqsjyrlyfqpsj5za3m23mxln9hl"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.26.0"; sha256="1g2abaij70wqsxs49cirayx2w9za4x6bq0c6c1q7y14ii9a8sj0p"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.26.0"; sha256="0dm00hr7p3dgyhcj6s4cgcx8pjv366fix5pr0arfm0zgl4gby1p4"; depends=[Biobase lumi]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.24.0"; sha256="17cv7nis0dlj4qvvp114akywq79my0z5dhn13mm2yz8x492s7dy4"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.26.0"; sha256="0rcw9ashljvdf1jsn6kyc36vrz3a8fsphmvabxc4b0plzx05brsv"; depends=[]; };
MIGSAdata = derive2 { name="MIGSAdata"; version="1.12.0"; sha256="1mib6nibcxkjsf9hvf3q2sw6kbzyikfh6a663wf6awl0s876jlq1"; depends=[]; };
MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.2.0"; sha256="0fczp8mbn4g7s1kfnw5bq7h4rydpwqg9nsad0vyafcn4vcpy05zg"; depends=[Rsamtools]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.24.0"; sha256="118wxhj8gdprwkk8mr72d9sz3gx6lcz50s41yq6hkjcghpvpkba0"; depends=[]; };
MOFAdata = derive2 { name="MOFAdata"; version="1.4.0"; sha256="0z52zmhwvdvdk2ngq31c8v98lmy531ygvl29nsaj9sxhjkj7m7cl"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.6.0"; sha256="0wbn9mn0aiqfm5g4qrbypz8yprz3wn6162nv398zpgz3c671380y"; depends=[]; };
MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.10.0"; sha256="1np673w9ga64djlxkbazkdbl9ng8fm5s3s660i61iblgkv808n3c"; depends=[]; };
MTseekerData = derive2 { name="MTseekerData"; version="1.6.0"; sha256="0hi3347c9sk89zmr6s07ny4s03q9v2iy0ycz7cl3jf9dwdm4kiy1"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges Homo_sapiens IRanges VariantAnnotation]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.8.0"; sha256="1yhnkbdac4nb70w1lv7j2hhzcpsd7c6860pcjf0mkahvh1w6fb3s"; depends=[]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.8.0"; sha256="0pksmm6wh8p6jqvv7r4yfwdbgpzjfjjcck61907dckbkq1s5jpsk"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.8.0"; sha256="0xx86g0x20r4x5p9ab9p2qyzsnjflg3cslfhgywcagr9k5ydbgbs"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.8.0"; sha256="08skv2gyiwrbqyigfcbdnajb5945lv0f6q9sydkkiwm2kgikipqx"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.20.0"; sha256="1mvw87x8qd63jkh32kb1vnpwh7lyvs4pdiiyvalsvlm6xrz4izgh"; depends=[MethylAid]; };
MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.2.0"; sha256="1658qxjr2i5i1iwvcn74xasiysa0mq0d3y7j0536dq5dqb639262"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.24.0"; sha256="00v5sip4q08hvwsl32yflsvqwkm5cldcp2ys639rgjcyy2ygyyl1"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.8.0"; sha256="0lm0kkk0pqxqbwyiv61irljbhkqcamyl96fzp5xx8kzvzqjvgnkq"; depends=[]; };
NestLink = derive2 { name="NestLink"; version="1.4.0"; sha256="1scfix1qlih2fvp1ib6j833m833328phr49q750v9w06sxgq8qii"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
Neve2006 = derive2 { name="Neve2006"; version="0.26.0"; sha256="1xq35758qpwyy6wcniw2pdiv4bl3i9kawgzg2zlspkf14m4kxsyq"; depends=[annotate Biobase hgu133a_db]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.6.0"; sha256="1jjxk97g58m1jly0sn99js6zgaamj1zidp3p6pjcipdr30gfgmin"; depends=[MultiAssayExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.10.0"; sha256="1xpj66ab743nw486ixp6ijv59xy2g5jb07aafynpbn87mjq4f4yj"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.16.0"; sha256="0cvg4mmpnkbicm2n678b31ji8gg828af2s2i3191dz2h1smg0938"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.28.0"; sha256="1f4xnk11i5pgckglkrc4fp80x07aw318a0kr2lgdm9xm54ilvdn5"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.22.0"; sha256="0djlc83x67822fph717xx8lcx6qblpqvvb7ja5910fl3flqbf0w6"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.22.0"; sha256="1hgy7zjd057gxdxibi111nyzpsawkxs5a9jsrpxdrz378l0vg2b5"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.22.0"; sha256="1hp0n6790i6rhwx4x2kvf9bs0lwyx6jd394jf6rly889yysl7zyl"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.16.0"; sha256="1ml9fcpcah0w9rk0mmymjcsp16vnz60dry2r4bjxfi73m0qbr5l9"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.24.0"; sha256="1hb1gq35h4rnhzm00dk77la3y7imqhp9qg15akag5cx30pn4dqmz"; depends=[]; };
PepsNMRData = derive2 { name="PepsNMRData"; version="1.6.0"; sha256="1j2z4ks355c2vnm6m0bk1b3yq73mi1pp9z7j39jll4arv7kmrm3g"; depends=[]; };
PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.2.0"; sha256="1cn3y9mcrrh0yq2bsks16w3c041f5pir40zar86f25br7bw7kbas"; depends=[Biostrings ExperimentHub]; };
ProData = derive2 { name="ProData"; version="1.26.0"; sha256="0vs4ybckr0bk7hcl1y2afp1rd1h0nya281pjs65dc4pcw6qhv32w"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.14.0"; sha256="04h5gidmi0vwhs8vlg7kvijz938dk8ljf33r4xr84axvjlh3wh7w"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.18.0"; sha256="05p10rm93625lh0gv6wvfdvvqz526q35p4mgih6d1mgm90kx099v"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.18.0"; sha256="0jpdvd9s2g2fi4wdmbriz18spngbhny66v2b417mcjjlm4vqssv9"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.16.0"; sha256="1ya6r7fggwpfk8g7cv1f6x4aaarl5m625ch1rx6hw2mrjwazjgkb"; depends=[]; };
RGMQLlib = derive2 { name="RGMQLlib"; version="1.8.0"; sha256="099gi4aykzkl4p0gs7w655rhrvyb295x2038szwbl7k0801ffjnd"; depends=[]; };
RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.24.0"; sha256="019jfgv6pk93cwkgq4wpq850ff7269s793vdg91amwpbq4z4ff2i"; depends=[]; };
RITANdata = derive2 { name="RITANdata"; version="1.12.0"; sha256="16ysc6aaqb6y7prckbbbshl5g41hill43gp273j9mhgn9yqrd66s"; depends=[]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.26.0"; sha256="1v9by52hzncm54zw7rwjpw91anmbwaihkmh0qih44jh1l0zv3il8"; depends=[]; };
RNASeqRData = derive2 { name="RNASeqRData"; version="1.6.0"; sha256="14g6ylmi3r4iv30sxdv4kl8c2fvkwng4z5b60dsiwm276ywd3ggs"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.25.0"; sha256="0a8yki07p27bv6zhsys2l8yyx21742kb9pnvz0rhf3ynh3bdapd6"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.2.0"; sha256="1kzqw9jfjccviz7gaw19rkha3a8k1x9wmmdf8wlnbpfwv6f58m74"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.26.0"; sha256="0hc6kj732wvbg245zip12g7h04pj30wi8abkg00fdnqgrmd7l6d0"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.8.0"; sha256="1aa374gmq6hv59qxsnsgigivaa56062g7byykag0vnwy907s3jpm"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.16.0"; sha256="0yzq8h34c5v1hrwm944nz2iafzra2gqw94d3adz4q1vaggrv4n8d"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.16.0"; sha256="05fz5zy0y7g0ixv400z1cxrlwhqw6dhnyx5j5mnxw7d2w3zwwndg"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.16.0"; sha256="18vgrvfbcsa20jyaxyi645ipg1ybfvgdnjq3d6dfg0n06fvxslnd"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.18.0"; sha256="1p5a2667hrp0c5ip9lkil9g1ql5538g513n7x6ns9yjgxrlplmww"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.16.0"; sha256="0s0l7z2bvjhifqzllc6r57pki9pfn6kmzsk219xmjalc91i4p7id"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.16.0"; sha256="1z1vxcahxzxygy5l86bcx48a3bfk22c6w8dlp12sdwkj9qx4rsd9"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.16.0"; sha256="15bmd2208nj4hbqivqq7fi3fggbip0y15q5nf9dncvglrfk80yjs"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.18.0"; sha256="0klm1gxl45f8ipwisv0y72cicv55mffwd90y3m8vlacxhan4v6my"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.18.0"; sha256="0iyn91f2dblnyd3xpp6xlq2cnkd2imw87h985qxs5v8nb2xar0wq"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.8.0"; sha256="12rffpfgradgv9dgiv7gi7rbiyx8fy01fv993qqv7dnz2wpzy8zc"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.8.0"; sha256="0flqmdg4wxyr5mv71rhks4jcbya8d0v8qz6iqa6c2qabmrl4sflx"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.2.0"; sha256="08v9prz162rf5i01lwv60k6k8skx2qxmpw4z8g6w5n67d5ap1wls"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.6.0"; sha256="1b3x8547cwv38wzfqrvkh9jrmzamn7wfm1sk2nk3i0xrhqh6jqaf"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.26.0"; sha256="1javba8cqjnczprvd2lk36xy9yr2cxyj69gapqi4x1h0z274hjz9"; depends=[BiocManager biocViews MSnbase R_utils shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.20.0"; sha256="12g0fnmcv5lk0v96zrfzk594krrsrma8svwqv28lg6b1fvkaggcg"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.20.0"; sha256="18p8lfn2m5m5f79nyfzvp47ipgdfxqzsf1hlsgn4jsl7k1dn4gby"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.20.0"; sha256="1wn05pycjx3waa4327g4krr3ih91rfh6v8r70wj7d536lc4zgvvs"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.20.0"; sha256="1006k83ck6mvh1awczzd3bpkprl9611faicxxaxy7mghg15xn9s2"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.20.0"; sha256="1l4jgs7rvjbdyrnh8ax8yaqbz6nd3mxq6sagc0jx6g64imc0rr49"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.20.0"; sha256="0ylrg1zlzp7k54n2yhnxm222h671ci9p9bfllkp66rjyjrrb4kpk"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.2.0"; sha256="114fq1pqlc29ydl0gvwcbnls7lb4bzx5gc0bz8plm2r5a46dqr1k"; depends=[knitr rmarkdown]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.20.0"; sha256="17xmaazysshijcdpchk6aab99kdiinyw2mb7r7v3w1043yl3a6dj"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.34.0"; sha256="0fi6zdhfhdxgimm3pdn6d1q1bjk13nw1nnc7gmvlk1a4nd3j8g86"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.24.0"; sha256="09z76j2cdqnxn6bs0sazhayfk9a7qr2j5x678hnqqpwr255jr8w3"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.18.0"; sha256="1abiqn5p1cr4wrzakpvqirhj40g9airav1vi0n568832mqclsdwk"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.20.0"; sha256="172hgkh6s4lj9hdh5wr6k12w2nr60g2q5ra0r5d06vs96ha8cwzl"; depends=[]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.16.0"; sha256="1liw2d0x1yf7jdizarb98f5jaw0a721qqhxgbva7923rmn9bh05q"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.0.0"; sha256="17hxan83zzya08csandpa0xrhla0wkhii8mc19yrlzqbnl5r5v1g"; depends=[AnnotationHub BiocFileCache ExperimentHub MultiAssayExperiment rappdirs]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.26.0"; sha256="1sz2qdn23dnr5hbif6yv0r19b7db9v5vs9sqrjj0nid93lqxmzqy"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.24.0"; sha256="1innxq39svlrw8v3qnnr3crf49jmj7pvymbh3bp14hhx12ylrvk5"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.30.0"; sha256="0xnb93q0wrd41x2lgmcraphz27v5ric9qn1cs2459f83hsl3ngj2"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.28.0"; sha256="0a42i0kixgxixr1fbm0vnzl08yhaxl2zrxkq9pvwsid6sjxnzbbg"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.24.0"; sha256="0h5rpwzqwa982m32kasyaj676hpd4pv0n4wba328m9shwcx0zlqi"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.24.0"; sha256="18z3pn5x00kdhg085ai7r592n6gpbaib6g1i3q1859v82hnn8k3l"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.12.0"; sha256="1185s7dmdn3xhdip1q2vilqhvckqszywsrfk47yrqaacc0mbnbgk"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.8.0"; sha256="060kxhrw00c3mj2fdp49zws7dz9wqc2p96zv1ikvnccqfd7f2ps8"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.8.0"; sha256="0jyhk5arr73pvcvqfra9rvm7pwhbgr67ls9nszkm8jxhb8jvzv5l"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.8.0"; sha256="1a7kawwihqvh06p3l9yfv9d05rv1nwh8vfpmm6553ddmxpkfmfa3"; depends=[Biobase]; };
TENxBUSData = derive2 { name="TENxBUSData"; version="1.2.1"; sha256="0cg1xii1zfilw64nkvfs0gsgys3aabnvkhhbkfdvqahp2ayhi7lb"; depends=[AnnotationHub BiocGenerics ExperimentHub]; };
TENxBrainData = derive2 { name="TENxBrainData"; version="1.8.0"; sha256="1mx07z95s29d02j0imqmvhf9v15j8qplggp233k3c6dgxlxbd8rg"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.6.0"; sha256="1ivps0sbw59ha8vha1wnnz92srnvp1pvybysi4fjb7w08xs0iyif"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.6.0"; sha256="1nnwm0irg6qy8jkldw42w3yvk9jmpy0gm4ymiw127wv6kfvqcb67"; depends=[ExperimentHub]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.24.0"; sha256="1p554n42c8vsva09mwcvvvgr0xbmyyayv3shq3dr9lbh6q3k9vwi"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.26.0"; sha256="16dai2fg0m6mya001i7m2z8bg6sf3ny3lqwpdlkm3panxh3w29v0"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.18.0"; sha256="06qr5byggasym0k9hv5f992swf59951hg2z9p9d1gkvjgp5i8hl0"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.12.0"; sha256="0jj2gwyxj8rsw2wcz0s7zniry9kylch4mzi1y31mhh18f3wwc36i"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.20.0"; sha256="0g6ykbx3kyf4misa2k7wsikdfjxk8lachfkhc22iz7xlglnlmw0p"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.0.0"; sha256="0y3ar2mrsqbryd5m3nampfc6jz11ilnfgfkydz1nwr01kblngzak"; depends=[GenomicRanges]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.26.0"; sha256="106wdzm446yzcnxgkfpm1mfcmn1glbwal9ha2bdn9blmhks2bj2x"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.4.0"; sha256="1s807spkvzmhqcjcdv2njydip3z3d0zk1h3cp860qyqni90q754w"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.26.0"; sha256="0sjhvh1sf2l6ik1qa679mkj2flw5gn1ysnmbph9806368s42yb2s"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.36.0"; sha256="1dnf6a04q05sxm2ki53nhk2jg4w7k8i40faligckai0nr2xikp8l"; depends=[affy]; };
airway = derive2 { name="airway"; version="1.8.0"; sha256="1h93izcpw2lqljaw158bw8n1mqkxrblrsz5nwiix4ssksx062daa"; depends=[SummarizedExperiment]; };
alpineData = derive2 { name="alpineData"; version="1.14.0"; sha256="1rzafq05m4fymwdzl5i5i0svpq4f36gg1wpcdcslrpxc7pc47izx"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.24.0"; sha256="1rrw4s2nzyqf6fryl356nn0928lqrd0igknqjsv1v05iqkimr81j"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.14.0"; sha256="1463x7qn32vhv3sglz6zdg5ld4fna6f6sgbggrljj5965ad836vq"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.24.0"; sha256="15sjqfxggvh937c4w7rw7wnywb5876809kj4amv7vi0sg868jiv0"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.26.0"; sha256="1r678xrzb6i6j8fr75b2pf9vns9w4kwicg9kf513a7a83b075n4k"; depends=[beadarray Biobase]; };
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.2.0"; sha256="0yjvb8qih0fpp93pf5w3ilrpsm1vzqhmcjhb1sqd7875jpas9a4d"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.26.0"; sha256="1nf8wds7mksjyyrfvvs3q501mm5van7jbsfxyna27bv0dmbcv49c"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.12.0"; sha256="1bdn1j4f6cfpncbgnzmrgb1jnffn5pxjznj8nyjdzyapgz6gy4d9"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.2.0"; sha256="0dd4kym1gxkjlf1s4lcjsxikvanzbnvqphxin9zb3j99wi7h98f8"; depends=[AnnotationHub curl ExperimentHub]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.26.0"; sha256="1xlqi32a5b84m31xn9x8sgrsdprylk8w2prbdn2y2lj75vyqislw"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.8.0"; sha256="1ibpmbyhnliiwllwdpysl1897c93l98zdi4283174r6q1w9iwnwk"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.4.0"; sha256="1dfrm68ysqm4z90zrvxas1mf53anfrk6mji9823088lj8haabxvn"; depends=[ExperimentHub SummarizedExperiment]; };
brainImageRdata = derive2 { name="brainImageRdata"; version="1.6.0"; sha256="0146rn8hmnmvfbnmqwr20wx76k3m6qii5rsqdqmcf420zhdfasnv"; depends=[ExperimentHub]; };
breakpointRdata = derive2 { name="breakpointRdata"; version="1.6.0"; sha256="0s96amrb0z4zz1xg3dd2wf9yir3g9xlj43sbfgcffa02hr2lvql0"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.26.0"; sha256="1bi9522c64yngil2153qsd5la6lmn41992vlzpcadq79c2gdm5sz"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.26.0"; sha256="0lkwgp8qwd869bc7wz5vx11fjk48516waf5d5r79ch7qzic50yqa"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.26.0"; sha256="189q6qggq08mcvj0ail7vilsiyirxwkvwhfwwrzms6lg9bdav0a5"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.26.0"; sha256="1s6zdhdnrigfnhyjajb9m1hsi3ggg7rs3wvyfxhzdbg5v9jwlkgx"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.26.0"; sha256="1ax8czbxh7kid1kb1p6skkiprqm1pjpyijnci4sp6pvldna5ksm9"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.26.0"; sha256="0a147jqwkwxlcf4id75i0wpz3mp9ynhvpmyw6kq7ksagk05zv2iy"; depends=[]; };
brgedata = derive2 { name="brgedata"; version="1.10.0"; sha256="1asi6867lp17gh3j6dg1d11mgk9mkym4s00hpfscp9zlayzqaahp"; depends=[Biobase SummarizedExperiment]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.26.0"; sha256="11im58z1fahy2r832r00wymjbf03hbafslzc5hicd53jgscviks0"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.26.0"; sha256="0nzfk1q35hh2k2wcsfsyvhr8n5b7rzvgqpk4ysakm7x0n3yllvr1"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.24.0"; sha256="02m7r1ixmwr119xx58j7xdmrac8banm833hg1q2jclzlxqkby1iq"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.26.0"; sha256="1l0vdrfxi452p79f40gkj88ikmlb0d764hz9iyfz5gcqimn4ziiw"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.26.0"; sha256="13b7b2h0viyyrhqfr9marjpy9svbqvnfkz0hfxizg267106kvdpr"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.14.0"; sha256="16hzrzrq61rn0946rv7ikk5b2xy2vc7s67jsv5wlvj19s58z5ki9"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.6.0"; sha256="0j7w6z56snrvlxpp5f47s71pmfk5xbp9fjl5sdkvas04979004if"; depends=[]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.26.0"; sha256="0ll5chmqcdlj99pqiy5mdlj46igb7xkvqj8hn32m4rxx60wjkki1"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.30.0"; sha256="0hrspymdgmck1nack5bc9lpkdcbp2mmh4w64xmyppw2znzknwd62"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.26.0"; sha256="17gkhk8z1hd6grsbqf4m7s4avnl7jn3zpmg4zh5fz6s890k0w6p8"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.26.0"; sha256="0vlv33kpimlpms14c027z2h5fwavwkdk0sz4yr4wk3mr0sdcblyv"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.12.0"; sha256="1ni6lrd5pr2pz6wkf7f8b9vzsiahnn266y21rnxgr2avvdmbzn46"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.4.0"; sha256="0q5d20zhr0zdba18afbladrw4qn5vifkdpxi10xg3a50b3i0x5y2"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.14.0"; sha256="0if9qiclyyf1jzf3fvj2kn9qs3xisi7py0vy24qqxp3wfahmnd1r"; depends=[]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.24.0"; sha256="03xi5zxrmcwpnacay0j5v9fw4m3jndifyxnpc6dbv5vs64yilnqp"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.30.0"; sha256="0m039gz0qic38zpmmjahbfn5yqh76win0pn2492gpr79z7jglspw"; depends=[Biobase]; };
curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.0.0"; sha256="062nkhxscs7kvdy9aa0l6ygpjchjvjr65myabdbpn1kd6ixbhk00"; depends=[]; };
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.4.0"; sha256="1sqg4wjmr17fyv94z3gyvxvvjjpys8y89k5ihmlk6l8v995vk1wd"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.4.0"; sha256="1arjh69ag7n8gqzpl61i9ibn0gkdl002a8rkczvp20w4fdzlz02l"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.24.0"; sha256="0j4gssv9wd5rzsx4pbhsjciy5fc87b9hhg8cia6cliyy33fg21gz"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.16.0"; sha256="0sahjrgq9b77xki5l51pz25ky2g13m31q7b3jc6jvggz9xmx9vyy"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.20.0"; sha256="0bcfa5w6sqabz35npl2vmrj35ymgciiqkcgjhplm0ngimsm9f0wn"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.18.2"; sha256="02m06scv1wxvh858bpxwlvwz4lf0qmvd8246axx65d2ln5fkvrc9"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.26.0"; sha256="0wvpbagh9v1lyc9rsvymzy38r18g23yajvis1pj0rl7wa0zk2p4x"; depends=[affy BiocGenerics]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.10.1"; sha256="05vlj0ivd9dym0078cjd3wswkmqsa7k5ffkl792fw9r5246s9dqc"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.28.0"; sha256="0cqkz6rlkk2a3fsaa736s731lb3mdvpqzd6ywff2l1wkdza7n3ha"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.2.0"; sha256="0ymdfkddrl3rbini83528x2ah8lvlvy0ard9m303dkpg5b90axim"; depends=[AnnotationHub dplyr ExperimentHub]; };
derfinderData = derive2 { name="derfinderData"; version="2.6.0"; sha256="1kbdwwdn7ykrdm36bqd8hnj0rw9ikcnxwg0w1xdc5caqmxsg1w8h"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.16.0"; sha256="03rl0ffl9103zi3mk028l79vhlpnlybx0hnl8x9fsxnqkx1rkj32"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.20.0"; sha256="0wb6g9q5m2cjnxnpz2aralridmsdmd70lp1iwszdl6qc2634c2bc"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.0.1"; sha256="189j44hfc12bf3r28hjm2wnigb9k4mmpwp6wnbxyx69nci3jh4zj"; depends=[bcellViper dplyr magrittr]; };
dressCheck = derive2 { name="dressCheck"; version="0.26.0"; sha256="0sa5d4isv3ni6bdq1i2yskycq357272flj2wbravy4zi7xrsk7iw"; depends=[Biobase]; };
dsQTL = derive2 { name="dsQTL"; version="0.26.0"; sha256="1pkwppfkfacf8xxmdflckql8x2n6abvfdvwly1va69288ibxy1xf"; depends=[Biobase GGBase SummarizedExperiment]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.28.0"; sha256="1l8628150dic4l48r8gqasxpil6552d3h9imysvznkq13j5j48wa"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.28.0"; sha256="14wwfbpdcd6ghv57hv5rfci9y3sgk0lvl2w9flss625bz50bil6c"; depends=[affy ecolicdf]; };
estrogen = derive2 { name="estrogen"; version="1.34.0"; sha256="1iqzw2ldmg4hqlwf94b8jczj83mix2znp6widjkfq5509wygq2dh"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.16.0"; sha256="0b714kg0chq2kf7x16j6kaaqfmr5lka030dx2k0r8fr6318h5h3i"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.28.0"; sha256="180viida7hd5xqm7h1n0chcpmpd8d5rjrkbjqpk2m2dzsqip9v36"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.26.0"; sha256="13ips2phn9r1y3c4lqcpcrwkh37b9b4rpikmnyyafcvs30283vad"; depends=[Biobase]; };
facsDorit = derive2 { name="facsDorit"; version="1.30.0"; sha256="1s46wk9rzzn89qvi4bz9ayb5swysg1y9rnwyqrfirq3s8wlx6bqv"; depends=[prada]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.26.0"; sha256="03sxg8vhvqq96hljv115ngz4arbnjkgz7z1fgzzqckv98v699ah3"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.30.0"; sha256="0v0d0v31yrsakln1kq72c1imlyh3hvi6y76qr1v2bsxn607kjab2"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="1.8.0"; sha256="0f20h8bx9gsz93lzfk18558r7nrdk0kakjv7kc2imz2g9sk97wki"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.24.0"; sha256="1n4aix1s0aq8va0b22s4crhj0v7gv4yw42qfq51sk3r4ym05nixp"; depends=[flowCore]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.14.0"; sha256="1rqa38p3gwackzac2zjligbckplnqm6vrva0qny68c33kzpkrlay"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.0.0"; sha256="0nwbscj298jdnv8wn8863jpj3hps1p2ndfxr5h4dgsjn0bn4cfm1"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.24.0"; sha256="12yfl9qx9n59skfavzlbdfxd1xjwlwf1q3ssbj6fs0c0dvfpfwhn"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.16.0"; sha256="02y8npnh9b5dbykivhvncd50kq0wvca04jljqynlby1qdvd3ywxj"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.26.0"; sha256="13l6hb7a0aqvdgd3lxq8zslw1srgvk9xkyf0r8qc4jygyrk1hcsv"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.26.0"; sha256="05zc0iddwzbzai29mhp0gh8an30dz9yb24p0kgi1f9ma05w2qvbm"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.28.0"; sha256="0bbyn9sx51hnsklyqy6p3x0wsaj05pgsmaqfnskadg4gmisds0v9"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.26.0"; sha256="11bfn34l8fw0jsl9vy2cvv9nk5ha6ribwksr0lqmiv3k78x4vnlq"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.24.0"; sha256="19d85x6wqwrbh3hv61qynxy0g7n9y07jr127n9h3rjhh49h0i10k"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.20.0"; sha256="109z4sd82w0r5ncw46y4s53r9m666pc55ih79sifglbr3c8g6gp4"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.20.0"; sha256="194r713sd5bhkbn3wfqfzh8a65q13b9jphgn8yxylnpk7vhqfiki"; depends=[SummarizedExperiment]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.18.0"; sha256="0m6jsgh2jd926v5q436affk3bb4smxmagpa23aghzlm997vz936h"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.30.0"; sha256="1xqi93b0hvmm9hfmwfzhgjz8sixs6zgb6ii1pv50892r804644d1"; depends=[Biobase]; };
gpaExample = derive2 { name="gpaExample"; version="1.0.0"; sha256="1cgp4a02rq8afijg8gib628vvvcj9285f9x6ww1njrggs4x8s0i6"; depends=[]; };
grndata = derive2 { name="grndata"; version="1.20.0"; sha256="1lk8pbqsgqpa2fxdz0inihifi5g8cgbziqclkghj4f0c0f8nv5rz"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.20.0"; sha256="1awjyghsxsdjhnb14dx8wk7j4lggqlpbvm9gsdk7jr16kjfj0wi0"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="2.8.0"; sha256="18bp4gydmlikbkjbyzj3kcqbb6srajlxfdzx0z50lvjgfy8ix18d"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.30.0"; sha256="0lmz6a10m4bszj0phihkq0m90agvvvlvan40ay2awig060dl0cip"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.30.0"; sha256="0wqv1x4ip2d93r1wl420vpc034xk2qn7fksgk8mbq2lfzbnc48gm"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.30.0"; sha256="01pddayc866c9mw7mb74nihym1cq4dgiz86liw2i3qk9n9yilv7f"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.30.0"; sha256="05qbicnp3p36gi8dpjmvv71xv7cf7zf6avkg5mw9y8cfd9bqmng0"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.30.0"; sha256="0q84yxfvspqnk3ak8fxpa7ibld1bmyg7vp8gdrwdjdp6f1xkmk83"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.30.0"; sha256="0y5y1g4j434q9dl0893sm80z15rphhda1x1dxywi9z9y689y19dh"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.26.0"; sha256="1hqh721di5fxzhpj9a0iljzprzxlyg76z6pxgyfslmc7bccxmld7"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.26.0"; sha256="1w7w36phhplm5qvm0s1mb7hzgw2yb5bhpkj8mdkwj623763nqxwx"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.26.0"; sha256="0kvki0fz5nmwf729mx4r7a94cmg0s14qndp20z19mpcxrdp2whqs"; depends=[]; };
hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.8.0"; sha256="174vl57gciqc4awpbkkma0dx4cv7i5cy6g18403yz5sci8xp2qyv"; depends=[Biobase]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.26.0"; sha256="0diy6ljvhb0mwfhj3dphk868pxz7s33mq6mwjylayh4imhpakxrz"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.28.0"; sha256="0f4kd2zmy1apxl8b7axjkcwc5l8x0nf9d5c688cszlnxlh8np4gb"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.24.0"; sha256="1gh0jhnlljnbzsqrvz4ssrbsv572fivwkg78dkiqrbrx9vjab6g7"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.28.0"; sha256="0fsa92p8z8df3db8chpld22c9yn78cwdn72n47fy5l51caw0v6z9"; depends=[Biobase hgu133plus2_db]; };
kidpack = derive2 { name="kidpack"; version="1.30.0"; sha256="0kpa3q9plvskynlww6fnk6mv34z5p900wgx8hxkgdknxmx5ihswn"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.24.0"; sha256="0l6cyf4a1b93pqlhlvi98yhdjby4rfcmdxvrrn8fpy5w8mjwmv4x"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.24.0"; sha256="05jw1l8bky88hc2gkrs032a51p07kfcwplfw2s4qn14qm90cq680"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.28.0"; sha256="1k17yy1hy0x5v8ywv4w6vd1kzx0z9mcn0c26sk2qzzmcr2hnx7xj"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.26.0"; sha256="0ryidn0kyxj5ms3yzhln9jizx3vpmxb1x60hr11v3435pw1ihra1"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.14.0"; sha256="1hcgkvgbs6rmj1a874hs4j3wdq9gc4pmfg4i6fhik4ykjv5r583j"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.20.0"; sha256="1psg6jsvlkna1dc5pjzkzy4g3cvxxl0fwzgpbfmhd4wjms4v42xa"; depends=[]; };
mCSEAdata = derive2 { name="mCSEAdata"; version="1.8.0"; sha256="1yspzyl3cg4i6x42vi9bk0cb74sxcb001pvm3hl3kcz52pqbabdm"; depends=[]; };
macrophage = derive2 { name="macrophage"; version="1.4.0"; sha256="0q9k2xbp7g1cixain59p244afnhia5ps52fdsnsyc6ca380vhrks"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.24.0"; sha256="1k2v131sqnglffp9w1s76g4i246xghw59l6rbgzq0k6ala58dyzi"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.32.0"; sha256="01015f7f1fa56pfy78c9zjxszc379rsqjxkbhwx6bzr1d0pvfq0c"; depends=[]; };
mcsurvdata = derive2 { name="mcsurvdata"; version="1.6.0"; sha256="04c7z4nal5brgjc3ap3ycgyfws6saxkxdzid2rqzb1h13zk42ahb"; depends=[AnnotationHub Biobase ExperimentHub]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.24.0"; sha256="0ha2sl75xk8xf3d6cw5hdiqad0ymiva3maq0cn3c5mgv083dj6xr"; depends=[]; };
methyvimData = derive2 { name="methyvimData"; version="1.10.0"; sha256="0jxpahqxsbnk3spmc4nm31kxxyvai62mlh2ihfkfcslmrccf1k5a"; depends=[minfi]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.26.0"; sha256="12bp0s6djpp262l1vlyg9sn01yzydz7b0hf183wmnr8568n91dln"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.18.0"; sha256="1jw46vwibiggwdi36a164ib1v04hibrxyxp63qsmqxn38rz7g8fs"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.10.0"; sha256="16v2p376v8aawb31ss6mmcf1mip0hyj3740jd6r8w3dvkvjs877p"; depends=[SummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.34.0"; sha256="0qcky2k39amjdincb3d29x8xf6sm2vn7643vvkx0jpbfqv5pn9cz"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.14.0"; sha256="0c7i4830x41wgg0qj3nal6s6am0wnpr3hgyb8i14fip0168xdyfp"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.18.0"; sha256="01j2wh9bl8v4xm8gsv620f6idrwpycs81kxgq4n4y9padqm12d1a"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.24.1"; sha256="1nsf0ydpb9gwsl8907srgscsaicpcvashy9x4akadlblk5f1sm6w"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.26.0"; sha256="094nvpimnz8i6qscbzzx63zkq3vwh4bahd9wh37jc66m33nx6xna"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.26.0"; sha256="1ni7pz1417a05dzwh51212g8dza828wd2gbvzxjdwamlsadqzq7v"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.16.0"; sha256="1vv4cifbr3rc13xrjfb0vbrkrinr2kwci8xcyjzwcbpch849izai"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="1.8.0"; sha256="0cwyd01mxy4h8irgg7r98b66f2cgnir9yh7zdbplrd4jrm3kdjjk"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.28.0"; sha256="1grhjfb7bchvm6y9yx7hj9ssj8jsyhgvl1imr8zpx4zmsryvsy8m"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.16.0"; sha256="0qfyds4wvbw3c7zhwnmq24cx9jxrlsvzh4mnks09md70vliwbiy9"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.18.0"; sha256="0fnz9i66y7y9zksxkjqnrk8p4pq5vdv8bnkpr03imsr4jdbvr882"; depends=[]; };
muscData = derive2 { name="muscData"; version="1.2.0"; sha256="1w3r42al6nl2hi6dkg8mp9kxpif15nrhap65b3mnlpncf5nd8ck4"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.24.0"; sha256="0kb0kj1cklyc7z0kx4vm8s16sp0xcichdwdadjq9r8yckxwy9qfv"; depends=[affy Biobase lumi]; };
nanotubes = derive2 { name="nanotubes"; version="1.4.0"; sha256="0dyxi22c5mzk97v8rg5mlwi9ikcd2x178s5phzkpnbzd0sl3n0yf"; depends=[]; };
netDx_examples = derive2 { name="netDx.examples"; version="0.99.3"; sha256="0m9wq6a0i0rjx5jchkgbpl6aypsvcnzl7mnqqzvqzk7p1jf3gc0f"; depends=[]; };
oct4 = derive2 { name="oct4"; version="1.4.0"; sha256="1xy1gv42b8z3bbghzakfr4y6kqccy3n7x8r0b6r9nznji1qx5n4h"; depends=[]; };
optimalFlowData = derive2 { name="optimalFlowData"; version="1.0.0"; sha256="0akka98nq5jk16k9472lnwjj6bgygng71x2l29ihykzn1ml9wyrp"; depends=[]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.26.0"; sha256="16w75i2bj4qjidzxx1gnlsxc68iv4kp3sj61c1r1lli4dzbcss7z"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.26.0"; sha256="1bd6cmpfsk4216drziflki4i3ys7jl2bb0jbsc4727zawxa9xqh8"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.16.0"; sha256="08limpq4hjri0d7s7sb0m4zhla4gaswmk0hmrnpq0i3bpdw3cp5c"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.26.0"; sha256="1rb67ba9lhavmg4ffc5vy37fl7a47c8zq0y9h3ra7wx10hgrwxgs"; depends=[]; };
pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.18.0"; sha256="07zahrfaw6jdb5yc33pj07shc1x5ddvszxvd9228iizhjcy0sp2m"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.24.0"; sha256="1vgxwfwrx8ar32r9axbvs22vvswq0hx1xmxg4y03i4l49jjam0id"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.24.0"; sha256="0vvrs29v8vgiph6dp0zwny9z1wyak34pafmnmcsilki9nv62amrp"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.24.0"; sha256="1mqykfd8xkd254pa18n94z2ypk1rvh4g7sx54igz0kv7d0hc2rca"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.10.0"; sha256="0dsagapcrad7k5ar48rg43vslxvrw1rwlfz135sgqvy81c97df1f"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.26.0"; sha256="1hd8qy82ks584z504m8r3gq4dxi19k8qw1d8vlfd8k6iis6wa82f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.8.0"; sha256="1fmrgma2xl2v6g3nda6kiizgw6lxfh0bi9vfqyarg08mj2m7yipy"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.16.0"; sha256="0bnwappr5n0db0595swl4f35cd31j3a2kzp1xmyddxm3xwr364ps"; depends=[proFIA]; };
ppiData = derive2 { name="ppiData"; version="0.26.0"; sha256="13ks4rpm25bnbhqyfqqw27af6px0jwr2mn16fid3j4lg7dr5c0qs"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.24.0"; sha256="0i7szry1chh8x7p1xynnzc9m917z7p0w031a6b5f6ffcih6p3g8s"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.16.0"; sha256="0mw6hna1avp7ihbyw75z157g7ssxwbigglhvcx52aj37bnlw82r2"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.16.0"; sha256="1kv8a53gkibr320xq5h26v7ilw5pjqcrsp2h18wqaw0cyi3s0wn8"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.16.0"; sha256="10cbzs3azz4hxpxhjaf4mgqpwf3b46b60arm2z2fyf5hgmxvh1ly"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.16.0"; sha256="14axk66vb1kkis27qg8nnq1ssdxxlqazvz574vjxrs31pwlawpiv"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.16.0"; sha256="0cib5p853rz5j3l9x752h62fsyrvv1i61v6nnacrmbzi4k9b1w68"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.24.0"; sha256="1jal8j50z6lc9qvydnlsklvghp2zc24zk3g2lbsn0k1ahrsxhx3q"; depends=[Biobase oligo puma]; };
pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.2.0"; sha256="02aq2sqilz11sknbwkdfca7gw95i4x5mf2n477kzn09dhiplq1l9"; depends=[ExperimentHub]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.6.0"; sha256="16jzij7cmiagxb0cp2pyna8s424kx3gz55b6v2qsssm9apy77bg3"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.8.0"; sha256="09n5289fk5mq1q9skfzmg4rxq66l68k5rv72pz256p7k5xslxx2y"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.10.2"; sha256="0w8hyfyk1sqlz0kicxazn60rl6zxi36c2g6yrdnxfdm3sfjvws1d"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.10.0"; sha256="0l4qamp6x2g5k2bix0mlxpv344yqzz3ap80zdw4b2jgdlq9gvfgg"; depends=[ExperimentHub SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.26.0"; sha256="1bsv8i3xapkpga04388598slqqjwpkh9nh3vy9q4ibj14wnmcf0w"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.12.0"; sha256="1v5qi6fh86snfpw4q0lqi0sznfdqv5d95a07bsdqf3g4p6saalxd"; depends=[SummarizedExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.2.0"; sha256="0hcxwaf0y7in611bnl1lawnklwy6f71g6p8ci7s7s1anzm421dqx"; depends=[BiocGenerics ExperimentHub GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.0.0"; sha256="0wpjlyipp9d50k0mrvmgffcwxc7k3fai736scvch0pa0g6kk2pg0"; depends=[]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.20.0"; sha256="12sqw6wi65g33can65blcdb0wf8qn91p49sxyiprq9wa5bbkmk2b"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.24.0"; sha256="1y16cfrrfsn30fp4vxmlk348zlrq5m2k6kidi00gayd49l0q99g7"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.22.0"; sha256="0b9aqj9mxkxdbgrc0i010nizpl6gvna2dla817135z7zzdqic8lw"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.24.0"; sha256="0qx21q874k6vg8i7kwhajlhvrb6z4xlmrzrs0asd180f2vx2g2w2"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.6.0"; sha256="0fyiwd2sfqdyb1msm4clz8lwbxlw4dfl83kkj25xmp5hh2dh915a"; depends=[AnnotationHub curl ExperimentHub]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.24.0"; sha256="1rla88mcnpl0w3k0szbhzzkbc786fq67vqyqwv2aq9f4nssjw95k"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.8.0"; sha256="19wfry1xx7kvl5mrmn4pv4amlv035nl73ni58qa6s5kwxzklpavn"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.2.2"; sha256="0fm3zy3z1p8f7li14ic2za219pav1sslsxkxd8yprlbi20ab7rx9"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.24.0"; sha256="1sxscydcd43xlyxr4rn3rmjc9hmwvqzrqw40ihmkva0ld8r635n1"; depends=[]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.0.0"; sha256="0yx12mcrmb2g6sjnk1ajclnc0z3i2aps2snw85gyanaad5l1igq5"; depends=[AnnotationHub benchmarkme cowplot DT ExperimentHub fields ggplot2 golem IRanges plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SummarizedExperiment viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.0.0"; sha256="19sisn5l3nvz2nr400jgz5clcj0iygk17xhpsjqgswi9p43a3k9z"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.24.0"; sha256="03kzrmdlixi31k6jfjhcn4dkm5g16rbd315ws4pqilpdwhgmrlff"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.28.0"; sha256="07cbpxzc78asjm41rx5nl4gyzczp7j293ih86ins31r65grwjwm3"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.26.0"; sha256="0a1k831pw0sl0blr1iy5is0s06sw4kadb30prd0h2l2z8s6ldarm"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.16.2"; sha256="0iamb2hp4dlib85jmzr77xm02ykriyzbh1ikqx9gs0hy15bribyv"; depends=[BiocGenerics devtools]; };
tartare = derive2 { name="tartare"; version="1.2.0"; sha256="0v4s0xbxqrv8syihn1ahcrak8gsyklxl3xnzfy4dmqz6bzarpcgd"; depends=[AnnotationHub ExperimentHub]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.6.0"; sha256="06f4xi2lh8idv7h5hmrmlha71k0dxc4s07apc2lj27l2wpm5dp85"; depends=[bsseq ExperimentHub knitr]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.26.0"; sha256="04f3wy2k884vxyij1yrivxb6jymkh2j7byh0qzmkq2gs9k2lbrka"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.26.0"; sha256="05rbyhcqp5czcnhz6rw6jii212ggpixgclik5bq0j8418mgvq4rs"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.8.0"; sha256="1qgn9c14hy6n79rdyzhj1baqf3wkmmc8nwdfg2aw65ccf3fr8mkb"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.16.0"; sha256="0wi2963il55fjmcs5r6bwhi73h96dv3j706fq42x2z9053y5vn92"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.10.0"; sha256="0afjn3jawalnrfd0aqa2lm56q4j5c42ah2lfrb7k6bl0a731x0yn"; depends=[topdownr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.26.0"; sha256="1iszm7cqx30d1nnl1l7xlqvn18kvgb6q4d1cspjnd1l8x2cf6h3d"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.16.0"; sha256="0vscg9qz6hf20sbaghsza1gkcch4vm0h93wwxhmsm9vnb0j9y06n"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.10.0"; sha256="1zah7palpk8b0r9nfivcf5w2sjvr27vgvazswbcs53shm056ry75"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.24.0"; sha256="0vx702xi32a4735pygya406wqk7ypn363mp3agb1cby0bh6p72qk"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.28.0"; sha256="1sfw59kv88mp1wf9rrib477xf9krw0crs3sikg8zpki1c2v06ihm"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.34.0"; sha256="00bf71za2m03njy3a0sh78x1b690nh07z6g52s52hgv35fihapk7"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.26.0"; sha256="109zl3n5cs2dmdwkgh34sqsghb6kywpg4mgr7qqf0iaisdcydix1"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.24.0"; sha256="0066r4hk0fgidg0q09fq4lldkm2d889z7xjg0zlfmnhnn7jv68hf"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.26.0"; sha256="0pvkrgwca7aqk833jp0d0dnz1kjhzl7zabbkaszqb659aq985z8m"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.30.0"; sha256="1bhw9gnr8291gyrg8bak2nzzgqgfgxvxwlcjd3v8w0a87qjrlsih"; depends=[Biobase GGBase]; };
yriMulti = derive2 { name="yriMulti"; version="0.18.0"; sha256="049armafqigkw7b8yfi9lfy2wggib0sx42w0bi9qaq4f9lhdf6ia"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.8.0"; sha256="0bz043yz0v78z7lildrcap9gwlqp550yclbax3lmydmkimic3hgq"; depends=[]; };
ABAData = derive2 { name="ABAData"; version="1.20.0"; sha256="1mclg6rgdagrvk76zcqi53b0a5wr8nbwwrmagsji2ncv1zq2mzxj"; depends=[]; };
ALL = derive2 { name="ALL"; version="1.32.0"; sha256="1i96kvk9s99h3a2xmkhhc6qcjp5l63jd5fhj6jv8yxzxbxq83fwq"; depends=[Biobase]; };
ALLMLL = derive2 { name="ALLMLL"; version="1.30.0"; sha256="0bs393hfn4zi4ysc1lyjpwp8p1g0gbzsq81rl8g9xf5kxg4b06pw"; depends=[affy]; };
ARRmData = derive2 { name="ARRmData"; version="1.26.0"; sha256="0wpxl3xjncpyj5x7k5sabr8bmgd85j743pk1j8cqwyb0i6nlkkgj"; depends=[]; };
ASICSdata = derive2 { name="ASICSdata"; version="1.10.0"; sha256="1kmr3b5hr18fjmissbzd2wlcwwdvyhdzjq5lhz0jq77p83qfx00x"; depends=[]; };
Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.26.0"; sha256="0rqg698b4kw0g2plspvg1pjkjdckj0b2cvwni6ax97g287z93hf5"; depends=[]; };
Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.24.0"; sha256="1ww8q5bbwi605wmiwvhz9fd780f2v48rzk3x0raa9bi9d0xzq8xs"; depends=[]; };
Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.28.0"; sha256="0b4f5nprvch8jczd1yrl1n7jsdd2x9ww8jd9p4qiyqyg62qnknc1"; depends=[]; };
AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.28.0"; sha256="0czwpiawgxyc8szpc1siik2rysxfmb8ir6byf6wsdq7cqa4gm78y"; depends=[]; };
Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.28.0"; sha256="16bqcw986q854gzg5mhkbgwbl6rw237i2b28jsc0skh7jnc2751f"; depends=[]; };
AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.30.0"; sha256="0d7y12s8ajy1qdch0d6nb053ja5dhb3l4509qgy5baxy7v09pg08"; depends=[affy]; };
AneuFinderData = derive2 { name="AneuFinderData"; version="1.18.0"; sha256="02vb3kmza5hv8bc424fdmfif608xvpdb759w8882kac8izpv29ks"; depends=[]; };
AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.20.0"; sha256="0qpib69wj91n7h56hrfl2vakp9sjw92s4a7q9y1xfia3hqyfdvkj"; depends=[]; };
AssessORFData = derive2 { name="AssessORFData"; version="1.8.0"; sha256="05fb1h4wpnncz93ypzazxkwmlvqsr399b6vnz98g11c8x4m25gx4"; depends=[DECIPHER]; };
BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.28.0"; sha256="0z6d0q1qhx3hl1ycgsvd2va2p9rmh9w74rwf851yfcvnfbln3gsy"; depends=[beadarray GEOquery limma]; };
BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.10.0"; sha256="16fkz7gd1pbc7lmbgwxcjdqs64jllqx1vdpkkhcglk027xvwqlf2"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
CCl4 = derive2 { name="CCl4"; version="1.28.0"; sha256="0zyhfqhj29g1w2l9n7wzr99jxh70p0pj5q7j2akdh5mnprzpq139"; depends=[Biobase limma]; };
CLL = derive2 { name="CLL"; version="1.30.0"; sha256="1ys1mvbhvvqdrp26sd7kd45ffz5jrm84wp3250kcb4s7q9s933m5"; depends=[affy Biobase]; };
CLLmethylation = derive2 { name="CLLmethylation"; version="1.10.0"; sha256="0xckg0xmbw5k6chf1g5m9hq9iy378fnr5hxcfg558i7q7i3c26nk"; depends=[ExperimentHub SummarizedExperiment]; };
COHCAPanno = derive2 { name="COHCAPanno"; version="1.26.0"; sha256="0j7rfk7szxhns1q4nccgs9ca5s5h9xbw5fqkz6zyxqpm427hsvrm"; depends=[]; };
CONFESSdata = derive2 { name="CONFESSdata"; version="1.18.0"; sha256="1hf55gq2y284pna7dvp81713miqjpf5zc9wg3sw0ayw88sfp5h69"; depends=[]; };
COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.26.0"; sha256="1993nbdkwwz7a52qpsmzq53x59xwcdbfw8c9qajkwsn61shxg0m0"; depends=[]; };
COSMIC_67 = derive2 { name="COSMIC.67"; version="1.26.0"; sha256="1wpvf9iynk22phpbh9bhk8iyv2sbmz9742ym6vsm3z26f4rdf5k2"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
CRCL18 = derive2 { name="CRCL18"; version="1.10.0"; sha256="0i1aic3zx7cjxz2as6fq4qblizjn8a04i5r5s16z0nkbm5n7nnhr"; depends=[Biobase]; };
CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.22.0"; sha256="0lzpq5ga9l8r28g3f54n22ajqzq158f3vddimirbdd06jm3wb1c5"; depends=[Cardinal]; };
CellMapperData = derive2 { name="CellMapperData"; version="1.16.0"; sha256="09nccxikyqzmbmfl27d1lf8salarx83wgg4w7agacyn666q2zqww"; depends=[CellMapper ExperimentHub]; };
ChAMPdata = derive2 { name="ChAMPdata"; version="2.22.0"; sha256="04dybk5fp3jxwpwvasqrjfdfi4hi8cy6d1hdkmr1iy8r19nksq2d"; depends=[BiocGenerics GenomicRanges]; };
ChIC_data = derive2 { name="ChIC.data"; version="1.10.0"; sha256="1lapcczii3y06k85bbg119fpwfzwpx1vm6kza13shr2ssj0kgrrq"; depends=[caret]; };
ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.28.0"; sha256="0x8v2l15shhd16w42b31458d581qnlnr4n726fr6pbrr8z830zn0"; depends=[bigmemory]; };
ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.14.0"; sha256="1g2nl3a9cffvvz3xfpp6sn0ppprkpcd9pzz94jf70x70v0973hrl"; depends=[]; };
ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.28.0"; sha256="1j9m614739vrc4gflc23pz339g1vvx5lywxq14mcb8m9mb1dskgl"; depends=[affy hexbin limma qvalue statmod]; };
CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.6.0"; sha256="15n1173vkicw6l64wb1qgn7x24mp1a0vlgmb7ni2496dfs34dd64"; depends=[]; };
ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.26.0"; sha256="07dbdmavgs5g53ig71c04pprx66cazqvc40w8r4bzrhdw50jp0ly"; depends=[]; };
CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.8.0"; sha256="1nwhmx9ccczz3z1h7hr4adrfxhighmk79nm60n0shx1slngvimy0"; depends=[ExperimentHub Rdpack]; };
CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.22.0"; sha256="16xylk6izj57vlk8hij3qgw43mnfzcf75191a0g6fqj8xgy4n9wj"; depends=[]; };
DAPARdata = derive2 { name="DAPARdata"; version="1.20.1"; sha256="01q622qpcwqnsynf1hba49l6si7w81qzn4fsy9q00yjm8388lgpi"; depends=[knitr MSnbase]; };
DLBCL = derive2 { name="DLBCL"; version="1.30.0"; sha256="1srzynbja9rcdnxc43fl1pzv9gdbx4f37krgwlnbp0312pw13g1i"; depends=[Biobase]; };
DMRcatedata = derive2 { name="DMRcatedata"; version="2.8.2"; sha256="0jwzbsl50agn0cyhg0fs292qvsn18v560ihcyq3lxg1jkv33w0k8"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; };
DREAM4 = derive2 { name="DREAM4"; version="1.26.0"; sha256="058f20ny3z951b4f0i99hwxxmrnkci1gimj03ngx72lidj6rc865"; depends=[SummarizedExperiment]; };
DeSousa2013 = derive2 { name="DeSousa2013"; version="1.26.0"; sha256="0r6jn5qgx904dkw7ps4ml30z7w21kal9cja5andgmg12g6wivjf0"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
DmelSGI = derive2 { name="DmelSGI"; version="1.22.1"; sha256="0r1jcsra199fn5z3hcgqp0abpxxlz3g64j4xljvxz2xqagz26y4f"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.28.0"; sha256="1xgzdxvk845zd7vcck0016698cwq4w17f61agq86y1kpcy7k0gpv"; depends=[EBImage]; };
DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.0.0"; sha256="1s861xidadihxd0pdzibqnisazyliwdaqab0aszk035h6ixwcpa1"; depends=[AnnotationHub ExperimentHub S4Vectors]; };
DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.26.0"; sha256="1z5p79595w6cf9rqangziz4q3c57shn67w5agf0x1d14acwswzzs"; depends=[]; };
DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.8.0"; sha256="1hp3n6m9ld4sq7jsscpdz7i2cfjp4jqyx6w0lr9y1di6zilgvxfi"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
DvDdata = derive2 { name="DvDdata"; version="1.26.0"; sha256="1kf0dzwy22b28p44xmn59rnpk2zslz8yi7xghsbkqmc5nxkwgxf3"; depends=[]; };
EGSEAdata = derive2 { name="EGSEAdata"; version="1.18.0"; sha256="1lma9xpqf4gghh89d43mbnssfqd062rimy5jdyskiaq2xw3xdpm8"; depends=[]; };
ELMER_data = derive2 { name="ELMER.data"; version="2.14.0"; sha256="1r9gikga3ywq2w20r2nfcbjz45f2yl8fqvrb1hpn0yzram290b0b"; depends=[GenomicRanges]; };
EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.28.0"; sha256="1fybmg8cyvxhz1c22xx217ifcdpbjybbghsg18gsap6s7gf5y5f4"; depends=[GenomicRanges rtracklayer ShortRead]; };
FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.26.0"; sha256="1byq28015k20bygs0dv4zngf0rzzbskxgv2ykjq977av1a8gsn64"; depends=[]; };
FIs = derive2 { name="FIs"; version="1.18.0"; sha256="19c921fky1slfqrqial0hz9r73l0m31xa2h2m19h6c17skk68rxc"; depends=[]; };
FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.0.0"; sha256="1r3zx27ymr7r8k7sizp4y1q33fsqpik837635jhal9cfi4rkl3kq"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; };
Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.26.0"; sha256="1khw2xd3v4g7piq3ds1g9539p40jzw3p7z6hvmy986s4njvfvhnp"; depends=[Biobase gplots limma VennDiagram]; };
Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.26.0"; sha256="1qqqi9zi8rc4mnkvgmlh582wjm6mwbkkiy6475asl0v6v8sf1m7a"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.28.0"; sha256="16nwb63src82whwfazsljd7cp0f5d1afpgsaw6ljnqaaz7palyv2"; depends=[minfi]; };
FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.8.0"; sha256="0b3hzjak4fmd2v4i7vv5lrvhixd3i9iwns5vvqnxikwlcfw3d1m9"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.18.0"; sha256="05x7q7yf2sn7jb3mf61r3v40dcksxb2kipb7n304sq4nbbn3dmb4"; depends=[minfi]; };
FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.6.0"; sha256="1zfm8mdrwafqyp0jk78sq182cdbxasv2kkd3iwpskfdxj4ddmm0y"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; };
FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.16.0"; sha256="1v9b97cddawzdmby7pdjfgmpppqwafjwdyafpdgx0a7icynjkygs"; depends=[minfi]; };
FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.26.0"; sha256="07ywjaf62zvx944685jdj5cn414lywi6yg3g856nym3abh8fi0q1"; depends=[minfi]; };
GGdata = derive2 { name="GGdata"; version="1.28.0"; sha256="0dkimkjzh46dnrz9kx1d0fbw9xl9il9b4vy7qmbrqnc8jiny0f8b"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.8.0"; sha256="0xn4x01njpmgpm2wyaqak1sa4v4qjksf0lv1jq451ah7nm1snwyk"; depends=[]; };
GSBenchMark = derive2 { name="GSBenchMark"; version="1.10.0"; sha256="1vc9zd53lmk3nsnwsz7ghizps58qlgxpjqjvbi3m4pafjs2h8rm9"; depends=[]; };
GSE62944 = derive2 { name="GSE62944"; version="1.18.0"; sha256="1n1ja9wi7r66jgragfj49xq2p0a12bcrdrhv6y1bc21c0rjl632r"; depends=[Biobase GEOquery]; };
GSVAdata = derive2 { name="GSVAdata"; version="1.26.0"; sha256="0jcyshq96kqzar48y2ajh0lzn546rbkb7xkf5fazixrrbkyfq904"; depends=[Biobase GSEABase hgu95a_db]; };
GWASdata = derive2 { name="GWASdata"; version="1.28.0"; sha256="1znjqwxpvaxdq4w04cxcpw387mb1x52kn730a99qsy4fj61m0c83"; depends=[GWASTools]; };
GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.18.0"; sha256="1jgnnlprcz0s0i1v5ar08w0ngfwf73a2l4d59lsbx7bjciwkwaf9"; depends=[]; };
HCAData = derive2 { name="HCAData"; version="1.6.0"; sha256="1ck373w9l6cyj8f476b4kfmkh8bvqics69wda3vawcbmfr9iial1"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
HD2013SGI = derive2 { name="HD2013SGI"; version="1.30.0"; sha256="0fi7264x4ryqykzjf5ws1azdxdx7aykp5nn570yrwwlqx2hxnl01"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
HDCytoData = derive2 { name="HDCytoData"; version="1.10.0"; sha256="1vcnwlh3d8krki689fx1j6g21rlk2cbj2j293dy33bqwpizgy047"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
HEEBOdata = derive2 { name="HEEBOdata"; version="1.28.0"; sha256="1sndqf11yn4ci4zan6f62qcx7lqpaahwx3bivjr90qr1rsyfn7x8"; depends=[]; };
HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.30.0"; sha256="10863kkmfipg5d1rb35zr48lkfak8kdhxgqy6592ds4hj38q8sl9"; depends=[]; };
HMP16SData = derive2 { name="HMP16SData"; version="1.10.0"; sha256="0rqnq7vkwm27p5rpvc1594yw2p0ydjxfjd7q0hjk482wl3lnnc74"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; };
HMP2Data = derive2 { name="HMP2Data"; version="1.4.0"; sha256="02x7a07f7v462r4rj58mjifkwgir5q0lxczjnq0wvnxx46qnbnmv"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; };
HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.10.0"; sha256="1173wlbghhjkdwwmv2j6938gncr8kr8kxjkmb7sk926kng7iy80a"; depends=[]; };
HarmanData = derive2 { name="HarmanData"; version="1.18.0"; sha256="1fvjh65s29mdxksmcv5h82vnapv7fqcdaa9ibwxc50wkzig8vpxs"; depends=[]; };
HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.12.0"; sha256="053rn3nmcgnqfg955ysvikizg1g1kzn66kg7dn2vnwhgnif9r5pc"; depends=[ExperimentHub]; };
HelloRangesData = derive2 { name="HelloRangesData"; version="1.16.0"; sha256="128hlf2nixphidbgky3qcmfrb4griiglqz4as7yv0ybn85bx07f2"; depends=[]; };
HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.10.0"; sha256="0hi2yfsyf298b00992ssxvypafj89gbabn2h4x4i9bq2ddi4rqv5"; depends=[]; };
HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.26.0"; sha256="0i5mpfw5nynxraa9c2rzk6fw6mhxr5ybxig6g1fxidhdbwy8ry6m"; depends=[]; };
HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.2.0"; sha256="0j65ip5wfkihpvbr0qyxk7yvdfd23aynqgvnrj8xnmpxihz2diz1"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; };
Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.26.0"; sha256="1r82bva4w8gkzj021d14ylnf7pd61mh28vhmmcy1c4l6qd00fmqs"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
HumanAffyData = derive2 { name="HumanAffyData"; version="1.16.0"; sha256="0mbya59yqmq59f9mplgd59v7z7hfjrcp2ki2d8iyn3c7xy0vx368"; depends=[Biobase ExperimentHub]; };
IHWpaper = derive2 { name="IHWpaper"; version="1.18.0"; sha256="0rlgbfdabw0ixvnw4ahxznln9dmy6j6y2hfpfv2zx1xznawsmng6"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
ITALICSData = derive2 { name="ITALICSData"; version="2.28.0"; sha256="0rxhv94h735k3ms0zddlawlzafc14gvqcsv9p7ldw0jrfq2dpb88"; depends=[]; };
Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.26.0"; sha256="1dkdgkql5lfbzwy01kzg1w79axagi7js2gmdaah3qs8gvc0qk3qk"; depends=[]; };
IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.28.0"; sha256="1i5qz0ryspfnd856p62zn6br6n634xkmz8fxl9fvdfrb7xq8vhsd"; depends=[]; };
Iyer517 = derive2 { name="Iyer517"; version="1.32.0"; sha256="06ih28b8g03nzp9z0nvni710z84ksarlrpcvywrsfkylzfm4xdil"; depends=[Biobase]; };
JASPAR2014 = derive2 { name="JASPAR2014"; version="1.26.0"; sha256="05k4x8via56xn7xxc4r669yj575z42faax6alm8nwskxj0jf188c"; depends=[Biostrings]; };
JASPAR2016 = derive2 { name="JASPAR2016"; version="1.18.0"; sha256="0k3wlj00bbk5hv6f443v362xpd0jf2v51abhbypv6nrlmlmin315"; depends=[]; };
JctSeqData = derive2 { name="JctSeqData"; version="1.20.0"; sha256="1dz7ac8br6x9mgma922sf6j5689dca1dqylkcqkyvm7m91ivjgij"; depends=[]; };
KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.10.0"; sha256="1d1dac9yq61fpyi5f7i16shabccl1x5zhbrh11bnzpwkwydx6nzz"; depends=[Biobase BiocGenerics]; };
KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.28.0"; sha256="1vv3r79f2r7a80ivmqfrfhy2qqjmwibnfy3vdijfpld56wli5ayh"; depends=[Biobase BiocGenerics]; };
KOdata = derive2 { name="KOdata"; version="1.16.0"; sha256="0y1i3fhhj3mqa813hfslv93iskm4pzbrhb8ld388b6llls80kxa6"; depends=[]; };
LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.28.0"; sha256="12z1ak7aijdd0xsra2lg8ny57wsx5hvdaj0ph2gq7nkjzmj4clcq"; depends=[IRanges KernSmooth]; };
ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.22.0"; sha256="0bh4gz1cna4cq26g1820rndiyg40bkbc3wnpl7sgcahqdg06v5wc"; depends=[methylPipe]; };
LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.26.0"; sha256="1ybccdir9a2p7xvngph2sa408pfdh99s4ssqwm1l1m08vjnj96wc"; depends=[]; };
LungCancerLines = derive2 { name="LungCancerLines"; version="0.28.0"; sha256="05j9ybc4xs4da6zdc5237ynqrn1dddsr98lplsx9is3nyw40qb54"; depends=[Rsamtools]; };
M3DExampleData = derive2 { name="M3DExampleData"; version="1.16.0"; sha256="0d07qnhkipwj6psxgl6wmp46jkiv8f20chc9wga405yyqxysk2pr"; depends=[]; };
MAQCsubset = derive2 { name="MAQCsubset"; version="1.28.0"; sha256="1n7y3663jzrh7g50dp2g5pxgjz7cjjjfwlha3pdpkzgdwv0im59x"; depends=[affy Biobase lumi]; };
MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.28.0"; sha256="0h409f2g4m8b67b6id3klx615m12cbg5cv5gfilk4gwmv12jravz"; depends=[affy Biobase]; };
MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.28.0"; sha256="1d35dxh090cqfw5ry3hix7c7x5k9mfs4l069hn7m0d7rjy526y39"; depends=[Biobase lumi]; };
MEDIPSData = derive2 { name="MEDIPSData"; version="1.26.0"; sha256="0p5glf7rs177729wzibbdmaqz9rpkjmgqa4pzrba3mi6qbqy7q4i"; depends=[]; };
MEEBOdata = derive2 { name="MEEBOdata"; version="1.28.0"; sha256="1crjy0xiqsgkjs1kz57491fnlx00914sbjljqrf9smxzhn0g3rcx"; depends=[]; };
MIGSAdata = derive2 { name="MIGSAdata"; version="1.14.0"; sha256="104jfsswi1lh7m8nh25rvn8hdsbbraa4i5p1dg87dzihb88jgzcx"; depends=[]; };
MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.4.0"; sha256="10r6d641yqcn5aw135252fqxx3z8hjckwfd8ry0brx0pxq5xd20g"; depends=[Rsamtools]; };
MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.26.0"; sha256="1ajkpgfq0nhi4r7br2qw5v08wwpml2cnm7253m3s8jj2cajxf4fx"; depends=[]; };
MOFAdata = derive2 { name="MOFAdata"; version="1.6.0"; sha256="0zggk3fq0a7qym61733fy9ks9ybbz6dbkpahzdgv224rxwda4ijh"; depends=[]; };
MSMB = derive2 { name="MSMB"; version="1.8.0"; sha256="0x8q4ifi684yyylsa5csyz6bzdp82r89a7c5fw5bkgyid9j3k7ba"; depends=[]; };
MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.12.0"; sha256="137faw7y0118jwyh4inss46gxqh1mmqsk0jk5c3d0gvh8a6jyips"; depends=[]; };
MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.10.0"; sha256="0h9zar4nrlbfbggq8ficmqmpzp81cwcsbjcya42bl44a1sfh1nnp"; depends=[]; };
MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.10.1"; sha256="0918dwvybdcbpy73c8wwdiakzwg60q3rblpn6nc05qh3h0pkma7c"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.10.0"; sha256="04cbv1sikk0y66sjzfvaahspq7ycbyk82bzd8nx1mbcvm8mvmgi0"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; };
MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.10.0"; sha256="1ad3rc51zh59r109p09vlbiwwadpbf35cw3lrciyji32rcvzbs50"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; };
MethylAidData = derive2 { name="MethylAidData"; version="1.22.0"; sha256="0vhnynxq3qvhkjqz3ijwacjy1149hn22hhvvyp9lyhkz8zh2lh92"; depends=[MethylAid]; };
MethylSeqData = derive2 { name="MethylSeqData"; version="1.0.0"; sha256="0l4nlnascxizm6n7fq7f2ynqlvp01ml64s9fynn153zhar4aa5nd"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; };
MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.4.0"; sha256="0c8vy63ripm2srmz6mac4r24rgcsjvc2qvrm84sll96cn0pxczr5"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; };
NCIgraphData = derive2 { name="NCIgraphData"; version="1.26.0"; sha256="00x01z7rzpx9hapxjj30ijd1l6jjid127y4krsazx58vzkjlv6z4"; depends=[]; };
NGScopyData = derive2 { name="NGScopyData"; version="1.10.0"; sha256="0lfln12i2m0yz1mdv427kd8rln8zd361r1ndi3bykvfk5j02k89i"; depends=[]; };
NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.0.0"; sha256="06r7v0hz76fkv7m3rg1wp08zhdm5ahj0lvx5rhr21jx712a0nmym"; depends=[ExperimentHub]; };
NestLink = derive2 { name="NestLink"; version="1.6.0"; sha256="1p6c1bpa0d92p6br9wbrjqgxyxjldlk4qw8m84j1h29prkb66dhr"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; };
Neve2006 = derive2 { name="Neve2006"; version="0.28.0"; sha256="06f9gyczci0nj99pagzssaf853j2biq4k75j6vh6h6mg27kbz2p3"; depends=[annotate Biobase hgu133a_db]; };
OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.8.0"; sha256="0jhcqiqcabrvf4x3vjc58vby01ilw7959b5sjy1w8flpq0m4nvaz"; depends=[MultiAssayExperiment]; };
OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.12.0"; sha256="0na11zi4dbphvvr0pl4lkaqihyr2bg72cpdrvv1qds236zs4nd0a"; depends=[rJava]; };
PCHiCdata = derive2 { name="PCHiCdata"; version="1.18.0"; sha256="0g8yicmm4d4c54vgwvsx9k5lfmkkbkjs99vg03x85g9r5h3ifd7f"; depends=[Chicago]; };
PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.30.0"; sha256="060mwfg4d7kqiryr7v91ifdvrbpzdfawd73yllgs2bfyknc0x0s7"; depends=[affy annotate Biobase PREDA]; };
PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.24.0"; sha256="0zbzr86yb10vv7fc5g3pys3cmj6400h1wjwjcdb9pbff05ypn9ig"; depends=[PWMEnrich]; };
PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.24.0"; sha256="0c9rwr5qxz5zydcfg9q12w45w5jsd3sfyp81cy47xy0jbiss5ni6"; depends=[PWMEnrich]; };
PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.24.0"; sha256="08rdilnjlp2haawyp5drwas0dy786ny4ljb4z257d31vii1awfz8"; depends=[PWMEnrich]; };
PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.18.0"; sha256="1gylgs0rvm8hdja8iqp4bhz21b80rnlwz3hfr1z7xlhljzj58r11"; depends=[]; };
PathNetData = derive2 { name="PathNetData"; version="1.26.0"; sha256="16h9jb86xi0fxg8k935yzyk07z7pl7cgfwv7xg767d27n27j6hgb"; depends=[]; };
PepsNMRData = derive2 { name="PepsNMRData"; version="1.8.0"; sha256="1jivmg2lqyx60s1hxlzfi5xhbcvxjhx6h2wwdaxi8z7qwbss54zr"; depends=[]; };
PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.4.0"; sha256="12lvh2a403l4j4jb2jfnivdlb4s8mn7bkdgcxwpq8cm4g1xw03ns"; depends=[Biostrings ExperimentHub]; };
ProData = derive2 { name="ProData"; version="1.28.0"; sha256="1w9z3vl8b5v4ajhdgk67wyp42yqdnjcgjxd64ngjdnhdyain80pn"; depends=[Biobase]; };
PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.16.0"; sha256="11pacmb36mql7w38f4y0qpcnxsdbkx3dwl216giic10clnv4gbf4"; depends=[CAMERA LOBSTAHS xcms]; };
QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.20.0"; sha256="1kjgv5vjarkpj593ks33z8mggrlzwacqa68gxz99w5snwaa9bck8"; depends=[QDNAseq]; };
QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.20.0"; sha256="0hz37vydv5jji4p87ayz7hsk5iq052r910jk2x0rdmic6ikqsyji"; depends=[QDNAseq]; };
QUBICdata = derive2 { name="QUBICdata"; version="1.18.0"; sha256="1lai9lgvr6wlxrfhhha26xipzgw2zm005b55lss26g07zzln54jv"; depends=[]; };
RGMQLlib = derive2 { name="RGMQLlib"; version="1.10.0"; sha256="1s8b0d62qrqzkg84dszam7chl3rrdm2lmmyqnv1pil0qy4njb37w"; depends=[]; };
RITANdata = derive2 { name="RITANdata"; version="1.14.0"; sha256="0lbijw0wrvqdnih6r5rplr1836bz7y3q31h7cmrbhjycd1swz9z0"; depends=[]; };
RMassBankData = derive2 { name="RMassBankData"; version="1.28.0"; sha256="0af45pmkjin798jzg09946kbp7fcgsz2wva9d5bm4f63qlcdjvfc"; depends=[]; };
RNASeqRData = derive2 { name="RNASeqRData"; version="1.8.0"; sha256="1q049h87cds5c5nkmcrrzlipcllqpcjcagpvaxjr956wqaca64rg"; depends=[]; };
RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.28.2"; sha256="01mhm2fgya1nl8syqjya7ymc74kwpffabzhcr4dgzy73x7sy5bcy"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; };
RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.4.0"; sha256="0hc4jjxn7fll5qsg42lrm8d4jcr2a62c2s9j5ji5y0z0hizwph4x"; depends=[ExperimentHub ExperimentHubData]; };
RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.28.0"; sha256="0b0am8x1fns3mrvhbxandp2r5wlcb8fv5z8dhj3wai79mjypz3v4"; depends=[]; };
RRBSdata = derive2 { name="RRBSdata"; version="1.10.0"; sha256="1z1dj200qqc9y5swql4azd7h7977p65lnx7sx63xzcrmq7pilm4v"; depends=[BiSeq]; };
RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.18.0"; sha256="1s9lfynynzdbgm2vdgb3nim1gyb0sgw17r17gjzzz6dd7pj5fkx4"; depends=[RTCGA]; };
RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.18.0"; sha256="048wrw6s4p24gr9ijj17nzfq4b87vl4m1q7ncis4rc5xza1rfh6w"; depends=[RTCGA]; };
RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.18.0"; sha256="1gldz4phkrqr2jiy7vbicg7m981i07r0n7nvvb2xqmy65nyby8xs"; depends=[RTCGA]; };
RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.20.0"; sha256="10i2w5grvdwcisvalxljfglhfmq9sq3c8c4077fmpn2kzb7f428x"; depends=[RTCGA]; };
RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.18.0"; sha256="0ilbf8ifk2fzlm9bxlka6vwqaz4fdwn71nd2pzzx2nf7vz0cxrb7"; depends=[RTCGA]; };
RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.18.0"; sha256="0ngkry4vsimpgkj8iy2l16890kw4dampldwx1jnn7cnrh8961h10"; depends=[RTCGA]; };
RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.18.0"; sha256="0k52934zrdc2a3g2vsjj75f59m7vdfmlsp66wwf78zv1m45i3sjf"; depends=[RTCGA]; };
RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.20.0"; sha256="0hixibpdslq08848k4085hh5f02fq2mbrabf04ilvmyysw72jdjs"; depends=[RTCGA]; };
RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.20.0"; sha256="19wfizv7n4zsk11zxqk7hx30g6yg68hkskv5ij4cq8lwwmxn6x5k"; depends=[RTCGA]; };
RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.10.0"; sha256="1d6j9zbgjz18di0sbgprsw2i9mwkihhasf28j710v62wrgmqa51i"; depends=[Biobase]; };
RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.10.0"; sha256="1r4a1pjzldj27mnp72fkh54gzmfhsyig07843zv0n6jja4zf8hch"; depends=[data_table]; };
ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.4.0"; sha256="10my0a0gk5cb247ffdrgl6ja94apyrv7f31x8h9qhz6hrlcc1w0f"; depends=[edgeR limma ReactomeGSA Seurat]; };
RegParallel = derive2 { name="RegParallel"; version="1.8.0"; sha256="060srcmdqbxlsi62pq0bswyv6f58wc9kcnwx39isf2z64prvzkj3"; depends=[arm data_table doParallel foreach iterators stringr survival]; };
RforProteomics = derive2 { name="RforProteomics"; version="1.28.1"; sha256="0pnrfp2i2cqv73bgzf391ydnbjfv9yc0a4pb092x5mrhcxabmw7z"; depends=[BiocManager biocViews MSnbase R_utils shiny]; };
RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.22.0"; sha256="1aq78hkabpp2075dp97xjiqiyhwpyrxyg5dd3v54w85yagk7jp77"; depends=[GenomicRanges]; };
RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.22.0"; sha256="0mv6j1s3aih8fy69zhn0ypm8fsrhk0a80ggln25gcdwm5zgjqhkm"; depends=[GenomicRanges]; };
RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.22.0"; sha256="1s53ay81anij062g1ha55yp4jylrv8csp98s3063cjix42xjncjz"; depends=[GenomicRanges]; };
RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.22.0"; sha256="0n4pxcy0awcq5mvfqd59djg9p8h7mp7x42qsryh4zrvkc53mk357"; depends=[GenomicRanges]; };
RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.22.0"; sha256="1bnwfr8z860w1m1xsy1k6jdjwwgpq7b703v0gyxv3gws4lxlyazc"; depends=[GenomicRanges]; };
RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.22.0"; sha256="1l2rr5dpr88l7ll0dsfwv767jl3lfgd61simng5mjcg8wq08ccdb"; depends=[edgeR]; };
SBGNview_data = derive2 { name="SBGNview.data"; version="1.4.1"; sha256="168pq5yhdn5cfxvyap1cpby0asblbhk192c6vg0jpvlwxh6djcsx"; depends=[bookdown knitr rmarkdown]; };
SCATEData = derive2 { name="SCATEData"; version="1.0.0"; sha256="1x8c0w5jf211illrmxhxvm08ms73k0637ky9ws52kayyrbnbz92m"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; };
SCLCBam = derive2 { name="SCLCBam"; version="1.22.0"; sha256="1rj84zyn39r0xjksx2v76kmn5jvgs4qnjy4r4dk5i917v5p8f62l"; depends=[]; };
SNAData = derive2 { name="SNAData"; version="1.36.0"; sha256="1mj741xq2kjlj4cry4pfhcrmqsfby7kks2lw26c418prcmqn2lcz"; depends=[graph]; };
SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.26.0"; sha256="1jima0pkpl4c86gi13kmi9jz7d0v3nsib5844m37942357bqrwgg"; depends=[]; };
SNPhoodData = derive2 { name="SNPhoodData"; version="1.20.0"; sha256="136inhl5r1r3xyfjg0klkkp0c3gzbp13avjjj9vj1z0cialzg9z9"; depends=[]; };
SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.22.0"; sha256="184hgw2g3r1p6jsswz2lcs9kyjbg4yw43wz78w5xfwzq78sf2lzf"; depends=[]; };
Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.18.0"; sha256="14cnfrq3xnka4xl9fag1avmajcnxw36c1nyk03ciq0bz9hsz9rls"; depends=[]; };
SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.2.4"; sha256="0qwmasqw2x9ynmsy4a32f6m31rf8p6ibp8i44rg0pd936smkf9kl"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HCAMatrixBrowser HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; };
SomatiCAData = derive2 { name="SomatiCAData"; version="1.28.0"; sha256="03k5f5dmc9afc6i4kw3yrd8d9al0zpr4rninh1zh31nq9misrlww"; depends=[]; };
SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.26.0"; sha256="0vs4zgp5lbjffdn38rhpwnrmz1nxiwp7l1f55mbcj4hb9y3v891h"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
SpikeIn = derive2 { name="SpikeIn"; version="1.32.0"; sha256="0layhz7xnl8n91acflzk4yabp1n70c4lx7dpym2hhqq9w3rq7f52"; depends=[affy]; };
SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.30.0"; sha256="0raxvskb1wpj7hxl2s2gfyaiw1d8978j6z2mbf3nsn0gijxaqby5"; depends=[affy Biobase]; };
TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.26.0"; sha256="1ar145kihn1q5s3chs7l82g3rzsz5nr40glsham7ykqfnl2f8b2z"; depends=[Rsamtools xtable]; };
TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.26.0"; sha256="152mxaq38w4rrcn5p4wwaich6cy502i2w24p3ral9hhn5pr0mlww"; depends=[]; };
TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.14.0"; sha256="09hid6vblnmff7p5x0x5wa4svnqh4708560lay58i4zdxj9nkqwr"; depends=[SummarizedExperiment]; };
TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.10.0"; sha256="1ly0ajjfqmhq7p04lk1lb5vngk7g2hc2l1xi6qqp5k7rjh0qd9cw"; depends=[]; };
TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.10.0"; sha256="15rbr5i8hmisq5harwyp0ysaxzs80bv83glangwch3ljxjcg1s1w"; depends=[Biobase]; };
TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.10.0"; sha256="0k3m6gv37s8f0gzda9kbw6y155pbna3c694a0andw3h5fma40s5y"; depends=[Biobase]; };
TENxBUSData = derive2 { name="TENxBUSData"; version="1.4.0"; sha256="0j85a48pzy95jghmm28yr7xpsfkkpyq7pa7ighnrlk694z61la2n"; depends=[AnnotationHub BiocGenerics ExperimentHub]; };
TENxBrainData = derive2 { name="TENxBrainData"; version="1.10.0"; sha256="1xwqagw4zx316mlx1biswrh78va6mcsxqlygybkppcjni3bczx5b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.8.0"; sha256="1sam5nmpxs57nyxd4g8si43dx908nlfs0c7ymxdhad1da5x3ax7l"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
TMExplorer = derive2 { name="TMExplorer"; version="1.0.1"; sha256="0dxqjcmfk1h8v08722nczqkkpw90cmdzl7wv579gbxqap4hp1l38"; depends=[Matrix SingleCellExperiment]; };
TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.8.0"; sha256="1hwh3l5ri3grzjici6kznqzxvhmhzkqb8ia6lgvwk2af7mv12zff"; depends=[ExperimentHub]; };
TargetScoreData = derive2 { name="TargetScoreData"; version="1.26.0"; sha256="0r5vgc88ipqxmpmhvi58wjcm6m7dbm6paf2r4nj2xbs2czww9r1v"; depends=[]; };
TargetSearchData = derive2 { name="TargetSearchData"; version="1.28.0"; sha256="031ivpg8jz5hd6gl3rhpimgymm1n4wcad5y9d3nfl8afw8aar3qd"; depends=[]; };
TimerQuant = derive2 { name="TimerQuant"; version="1.20.0"; sha256="13ylpp0dfb12vpcy88gdwf1632yxaqxn5s7j4z4x0phdm0s8brnl"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
VariantToolsData = derive2 { name="VariantToolsData"; version="1.14.0"; sha256="0jnapsbmr4q7kkfm2z09k6srphch6izsv1ywig39j5hyqzv53gc0"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.22.0"; sha256="1cbcqrclz5pvjaydg23z5kcc2shnqvhri8qm4n107gv9bld3772j"; depends=[]; };
WGSmapp = derive2 { name="WGSmapp"; version="1.2.0"; sha256="02h2n4jbh370rgk3l54aip1v89kvb80p0ml2lzmwwj8sy2c6h8ky"; depends=[GenomicRanges]; };
XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.28.0"; sha256="1ml5ksa1sfxcw594h5yv1kk7aycfi85jg0rs3mb3dc5cv6sx1z6l"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
adductData = derive2 { name="adductData"; version="1.6.0"; sha256="1vac40kjdfqbyjcb1if15i0w19bksyr4xv8gp377whpqiny1v8k8"; depends=[AnnotationHub ExperimentHub]; };
affycompData = derive2 { name="affycompData"; version="1.28.0"; sha256="1rq6m4gkabrvcbvnf1sqx856jyxvggqvk56c3mi56lzw2wy1nqh8"; depends=[affycomp Biobase]; };
affydata = derive2 { name="affydata"; version="1.38.0"; sha256="1p0pzfzczmsdf2w463wcj1yjcnrw02wj1m54d5hh1fc34fh4w1z3"; depends=[affy]; };
airway = derive2 { name="airway"; version="1.10.0"; sha256="0gy4j014sgrwbksqwjf9gz1pqi36vvxnhxjmll5srx6qf40f9cqa"; depends=[SummarizedExperiment]; };
alpineData = derive2 { name="alpineData"; version="1.16.0"; sha256="14b5vzizm9wj1s9pmrp93japwwlpb65ksf49i824g4q90z8qkp9p"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; };
antiProfilesData = derive2 { name="antiProfilesData"; version="1.26.0"; sha256="182p2nkdd3mc66f7lmcsgnhk2qya3hi3hyrr85m2gva14pvxja9y"; depends=[Biobase]; };
aracne_networks = derive2 { name="aracne.networks"; version="1.16.0"; sha256="0hjzs32xim23ixqvhmii76qa89v88wzq3mq84zpi6q7wdyqbrw85"; depends=[viper]; };
bcellViper = derive2 { name="bcellViper"; version="1.26.0"; sha256="1mqil6pbmqhj5hjjrai5ing3qnzggddcf6mn2a02d8ri5nnjmhwy"; depends=[Biobase]; };
beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.28.0"; sha256="0insx6l5xj93yivkamisifib4mn3ifq95zm3l0sxq0phgz8xqjfp"; depends=[beadarray Biobase]; };
benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.4.0"; sha256="1v9jr9hhgxmqk87a16syqgqjak7vr9jm2js4i82f05mncf0x2hkl"; depends=[ExperimentHub SummarizedExperiment]; };
beta7 = derive2 { name="beta7"; version="1.28.0"; sha256="1rr2b604h1a524kad21h645aa2ajcmcgf7wsf660ixar06cx6ar7"; depends=[marray]; };
biotmleData = derive2 { name="biotmleData"; version="1.14.0"; sha256="1cidmip2ra2qi9qmdxddidj9xwhdc42qm8bynffr3nqwj1s95vjd"; depends=[]; };
biscuiteerData = derive2 { name="biscuiteerData"; version="1.4.0"; sha256="1jl9ilp99b11v7r1f8kxc3qk7xm5i03pwszxyrfn27w7xdq9xp1p"; depends=[AnnotationHub curl ExperimentHub]; };
bladderbatch = derive2 { name="bladderbatch"; version="1.28.0"; sha256="0irfg4wnmhmhqbga4mmxdaj6w7wfcgpzwi4mfg0bh9ixzdsbnp6m"; depends=[Biobase]; };
blimaTestingData = derive2 { name="blimaTestingData"; version="1.10.0"; sha256="0kwz3dwncfnvmcyzvscc916bqwlncrpgfyv91m31hjlxp729hfa8"; depends=[]; };
bodymapRat = derive2 { name="bodymapRat"; version="1.6.0"; sha256="0amx5fwvrl7jvmqd2c87w80qaaps89cjnq0rijhl475na0cim8dg"; depends=[ExperimentHub SummarizedExperiment]; };
brainImageRdata = derive2 { name="brainImageRdata"; version="1.8.0"; sha256="13nfwbsf76vgx32m3jjs1lhng31wc2agm735pgn58wj38ndkr3ky"; depends=[ExperimentHub]; };
breakpointRdata = derive2 { name="breakpointRdata"; version="1.8.0"; sha256="0z0bkdnn03xxwir89pn980zqylbyjcliqphdgqb38p5q14iqbmqv"; depends=[]; };
breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.28.0"; sha256="1y5vk8rjgp1x2cphs11yhnbyix020f2z8gb58bfgm4nnyc1h6l6k"; depends=[]; };
breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.28.0"; sha256="14cfyrjq7pskcz3zk3x25hl0ykg941zxp5sngkszhf93gxq06icp"; depends=[]; };
breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.28.0"; sha256="0as7j31mm3z9fwxs48bbq20qamsfvp54c9y66a9mk5sz2dbnf1wg"; depends=[]; };
breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.28.0"; sha256="0499n7zdpn810wbnpq1yd84ary5js1rxaj9y9qnpsm1r7fz0dqs7"; depends=[]; };
breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.28.0"; sha256="0n7pphgcihhda5h0p95mg71hdw2274r857dl97ph00w4n756dyph"; depends=[]; };
breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.28.0"; sha256="1j3api7z0f4ip1dvlhcz8c1hdb17f55igq781zdjswrn2gnph0wc"; depends=[]; };
brgedata = derive2 { name="brgedata"; version="1.12.0"; sha256="14akzyvj7lngi8b0jfahx2j0bhqci7zyl1551jz7w70h4sxwnyaw"; depends=[Biobase SummarizedExperiment]; };
bronchialIL13 = derive2 { name="bronchialIL13"; version="1.28.0"; sha256="1mlk3k75hqn952g97bvyndrb46wddh7xf1krpz83ys196v8q30d5"; depends=[affy]; };
bsseqData = derive2 { name="bsseqData"; version="0.28.0"; sha256="0s45cyqlm1cqb682c0rjvgzgqa8zdizwy1x362bvd20nyl43y3vl"; depends=[bsseq]; };
cMap2data = derive2 { name="cMap2data"; version="1.26.0"; sha256="01mii0n6hqyfq5hvc12748px3f2idp8rrmikpzh646waxgb4jab4"; depends=[]; };
cancerdata = derive2 { name="cancerdata"; version="1.28.0"; sha256="11wy2ginxafv7wwaxqnkyim864hhhf4v6gnmwb7ccbvr0jz8sh74"; depends=[Biobase]; };
ccTutorial = derive2 { name="ccTutorial"; version="1.28.0"; sha256="0a25qy3b7y9rl77jzsl8s8ywvdnq2049l6jg4jav4w2rivr0lfm1"; depends=[affy Biobase Ringo topGO]; };
ccdata = derive2 { name="ccdata"; version="1.16.0"; sha256="12gqyva7jgqjlfj2xyji9b0dzldii8h6c741q0dpjhz7yr0k9wgz"; depends=[]; };
celarefData = derive2 { name="celarefData"; version="1.8.0"; sha256="0rhq2p6ldibcf3cw2x085y7pp3kxv8wpy3k42148d1mgyz2xgj8n"; depends=[]; };
celldex = derive2 { name="celldex"; version="1.0.0"; sha256="17mbghg36216zc7amwhmkizfc4whzqvrwsspl1ab6cdfbwn9bysk"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; };
ceu1kg = derive2 { name="ceu1kg"; version="0.28.0"; sha256="0mcwvydv3dna578h1g5a8gpvk6bsj4vr2j08xwmxq9g4k0j74v5z"; depends=[Biobase GGBase GGtools]; };
ceu1kgv = derive2 { name="ceu1kgv"; version="0.32.0"; sha256="018jkf6nmllyj1a1k2gxsgllrrkggrd7b6p2m96j8r7b9c112dbd"; depends=[Biobase GGBase]; };
ceuhm3 = derive2 { name="ceuhm3"; version="0.28.0"; sha256="0j97cwy08657d1b5c0sj7in341y0hadi2d6wjnrrmkw69xy3nbqi"; depends=[Biobase GGBase GGtools]; };
cgdv17 = derive2 { name="cgdv17"; version="0.28.0"; sha256="0dkml0za5yvcrw8yyam2z9vgxqhdb7va19wwi0sqwlxgr0jjzka4"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
chipenrich_data = derive2 { name="chipenrich.data"; version="2.14.0"; sha256="0pmz0rrd0hampzw72jqv7y8p1f165pkq0sir4xrj91xarnvyh4bk"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
chipseqDBData = derive2 { name="chipseqDBData"; version="1.6.0"; sha256="0nnyi95h4wzzidjblzgcxrw806zv11411vnd0h7m4qqgdmsf8zcx"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; };
chromstaRData = derive2 { name="chromstaRData"; version="1.16.0"; sha256="0ph80d53598635bb8g61acg5rqwnj8644a0gh297r4hgbvwlflab"; depends=[]; };
clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.0.0"; sha256="0h7i4s98sakyqiix8g65wqfhjqs22fni20sbdkhmnf4lji6dv1jp"; depends=[ExperimentHub]; };
cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.26.0"; sha256="0qfvijv1hmj5sqmmrcvnq06l9lclk01r48jac958bibh81vw7n2c"; depends=[cnvGSA]; };
colonCA = derive2 { name="colonCA"; version="1.32.0"; sha256="0r2670781hz1xgsn4l9np7svjjf0awlyk85zb4vycjyv38k7rllc"; depends=[Biobase]; };
curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.2.0"; sha256="14bnizcx2wr87nkl4f74mm4kpbi725486ja68yy0r6y2dj65q29b"; depends=[]; };
curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.6.0"; sha256="0w9dfzmkn3vpqbzy088gx1bab2k760w3xsrlhnggsq43qkygyjzm"; depends=[ExperimentHub SummarizedExperiment]; };
curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.6.0"; sha256="0irpqyva4bvdrph4v6f0vyh5lwsyaylsj06fji90ssia3jd7nn6p"; depends=[SummarizedExperiment]; };
curatedBladderData = derive2 { name="curatedBladderData"; version="1.26.0"; sha256="13ji5a6yfbk84araf11ynqy85psk68grk57bcha4r25x6w1anird"; depends=[affy]; };
curatedBreastData = derive2 { name="curatedBreastData"; version="2.18.0"; sha256="0nym274s6x5rcj7s9sn5zimv1vkc3llwz65hpv99ip0gm4pn5hqm"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
curatedCRCData = derive2 { name="curatedCRCData"; version="2.22.0"; sha256="0zb6f6iccam8dgkr8qlr5qarn2f8rbcy93rzc4f3s29m9p2d8srl"; depends=[BiocGenerics nlme]; };
curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.20.0"; sha256="0b5y1qh7qq6q79irsg72274cbz7b4ibv8z4n2jpjfnfbacr3w6ih"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.28.0"; sha256="0ghfy49zg7v8971vks9sdshk61bnzsj8h1hj7x2c18nvsnfz65zm"; depends=[affy BiocGenerics]; };
curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.12.1"; sha256="16xilq3dgsj8n6v174iczzv3i4mkrflhdrj0bnf4pxmfkbmf02i4"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; };
davidTiling = derive2 { name="davidTiling"; version="1.30.0"; sha256="1ql57f0wd3xks70dnw5f8sghm0k6fsc11yp4z4ibcpl7wma43hd5"; depends=[Biobase GO_db tilingArray]; };
depmap = derive2 { name="depmap"; version="1.4.0"; sha256="01cgd87mkckmgyri48d4h9lmhlm520mbc917gnrbygha7zrsgrz9"; depends=[AnnotationHub dplyr ExperimentHub]; };
derfinderData = derive2 { name="derfinderData"; version="2.8.1"; sha256="13swii4dl3n7cb4w656as27lgxr8bxc3sdj12fwlyv8yz9dd7b24"; depends=[]; };
diffloopdata = derive2 { name="diffloopdata"; version="1.18.0"; sha256="0pdhw9m50pm99frw2ifn3pbzd47q36kla46s44kpq6ak9hn05253"; depends=[]; };
diggitdata = derive2 { name="diggitdata"; version="1.22.0"; sha256="0r9kmg3xqmy8cx8w2g4lf8baap9aid7yikilyzxzc9n650l27fh9"; depends=[Biobase viper]; };
dorothea = derive2 { name="dorothea"; version="1.2.2"; sha256="172zwgppy0ral48f08wzid11m2ixhxb0ycyp3514kgr22w31bnni"; depends=[bcellViper dplyr magrittr viper]; };
dressCheck = derive2 { name="dressCheck"; version="0.28.0"; sha256="0kcaa44phaxg4dqgq195bc1fpxws40jipfz3lbd7gg7xyp6z7n8m"; depends=[Biobase]; };
dsQTL = derive2 { name="dsQTL"; version="0.28.0"; sha256="09ihlrljfz86m14gllmwkp2i947zv3zia1ri6yp651xr049xp2br"; depends=[Biobase GGBase SummarizedExperiment]; };
dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.30.0"; sha256="1w0glg3sqvyv790qgdyb2jf717yqsd7vpaysx59rakgx52bbhcjr"; depends=[GEOquery marray]; };
ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.30.0"; sha256="1wk1k46nlphqyv4010glmv1wqrlsq16lqjqrggp5f42p98fmc6mb"; depends=[affy ecolicdf]; };
estrogen = derive2 { name="estrogen"; version="1.36.0"; sha256="1ry13idsdiwwhcj12wl8mxji0771cqm4q4rhgxxc7hcldvqx8gkg"; depends=[]; };
etec16s = derive2 { name="etec16s"; version="1.18.0"; sha256="1z3nh61r6gmqr29v2rkfil0a4pgw55ysya86yw1jg7bg0jp9i781"; depends=[Biobase metagenomeSeq]; };
faahKO = derive2 { name="faahKO"; version="1.30.0"; sha256="15wscf2f07pjvs3yrdc7lcf9a8wik9rwiljbx49cadvhm8gh80fm"; depends=[xcms]; };
fabiaData = derive2 { name="fabiaData"; version="1.28.0"; sha256="1jk4na7sbhxkv73yj0b5jm36mpni8617r52nvislj83k3pp11viv"; depends=[Biobase]; };
facsDorit = derive2 { name="facsDorit"; version="1.32.0"; sha256="0pmzkryl3qj8fagf2jhgqc6w5l8r9vwfx8hv8dihdda3h7kyisv4"; depends=[]; };
ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.28.0"; sha256="0aghx2bv915nzx5rfmyijg2pv1pipf5fq88y3n01ca8lh7c2l0kd"; depends=[lumi]; };
fibroEset = derive2 { name="fibroEset"; version="1.32.0"; sha256="02mf174z9fwywaskajxcdpmpmqagbw05g8x9bz6518xw54r0yxw0"; depends=[Biobase]; };
fission = derive2 { name="fission"; version="1.10.0"; sha256="11aacszkknddaxg9i8vnwhdw4w6mr9y8qkddwgwhv305y4hdaxg7"; depends=[SummarizedExperiment]; };
flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.26.0"; sha256="17dzilkn4vvn5s56gz85h2nfvkfvvg7a2hvc9vlzz46bhldjh639"; depends=[flowCore]; };
flowPloidyData = derive2 { name="flowPloidyData"; version="1.16.0"; sha256="1ixxdf15zxkxmvfbq05w505hhy7ybq6bcm5hbyhjjxgm29lnk2xi"; depends=[]; };
flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.2.0"; sha256="15r72pgbggp1b61bkxb775bsga56za2l7a72bkhb3065k6qndjw8"; depends=[]; };
frmaExampleData = derive2 { name="frmaExampleData"; version="1.26.0"; sha256="07fj295ndshyxl0k3gxws9643wwk2xqshbnmm7bszai3x3ngiqc5"; depends=[]; };
furrowSeg = derive2 { name="furrowSeg"; version="1.18.0"; sha256="0dw0r35gng707zfzmw6mza9zm9k4a38vsm6ghznakygffawan5dg"; depends=[abind dplyr EBImage locfit tiff]; };
gageData = derive2 { name="gageData"; version="2.28.0"; sha256="16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn"; depends=[]; };
gaschYHS = derive2 { name="gaschYHS"; version="1.28.0"; sha256="1rir2b0zrgc4jrbfn5ah1apfgk04dxbp1ss7n68scm1880gjha1v"; depends=[Biobase]; };
gatingMLData = derive2 { name="gatingMLData"; version="2.30.0"; sha256="1a5516ccps6mhklbjmzp33dr1pcq012ryvl4acmw85kr9hw5bdws"; depends=[]; };
gcspikelite = derive2 { name="gcspikelite"; version="1.28.0"; sha256="185x023lxyvb2mza22m65y94xsl6ydk7bbpps287gp00d571skyz"; depends=[]; };
geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.26.0"; sha256="02llrmqd6pl882p0s0jb9cqi2jl8p7wwn6gyihkh1x6crgcsklkz"; depends=[GenomicFeatures rtracklayer]; };
genomationData = derive2 { name="genomationData"; version="1.22.0"; sha256="0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"; depends=[]; };
geuvPack = derive2 { name="geuvPack"; version="1.22.0"; sha256="1b4bjrk3lb3ina3xlb6f0ii0a0apbk06j2ilfkrv523rh55xgnfv"; depends=[SummarizedExperiment]; };
geuvStore2 = derive2 { name="geuvStore2"; version="1.19.0"; sha256="15f60889x0mf8ccrzxp3bsrw84r6wl5as2ivgh8ql0f0kyzprapk"; depends=[BatchJobs GenomicRanges gQTLBase]; };
golubEsets = derive2 { name="golubEsets"; version="1.32.0"; sha256="1rggm375b0856qs84gg64xc2m06xq5y7smbwsbvxlnhrbayfgg4i"; depends=[Biobase]; };
gpaExample = derive2 { name="gpaExample"; version="1.2.0"; sha256="10763nsi93rwrsr5zw5bqmzdfg5b1midcf0461i1gqisj8x6wyxy"; depends=[]; };
grndata = derive2 { name="grndata"; version="1.22.0"; sha256="1av4fbdg835qx67bzyfxwbwyp7rskpi4w60g1r6vvs8grfwzjs5k"; depends=[]; };
gskb = derive2 { name="gskb"; version="1.22.0"; sha256="12kb855yjbdaf5i14x4b8vzzwy4j2v8mawdrwdncwg7j70kc478n"; depends=[]; };
h5vcData = derive2 { name="h5vcData"; version="2.10.0"; sha256="1rrpq1w2n679glq30z132v3mhja515x62jgvmjcy0h3n4wczski2"; depends=[]; };
hapmap100khind = derive2 { name="hapmap100khind"; version="1.32.0"; sha256="0lf4fkdikdgg90amwdsb30z582l28g232x0yamc8ymajmq0382qa"; depends=[]; };
hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.32.0"; sha256="0c4wwqmvm185iw65bjd28mjjr5bkzj4vx4j2awlz0pscsqidx5fb"; depends=[]; };
hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.32.0"; sha256="189716h3c1v83hayh9mc630n9aawcg1kp94ka47fdsw7w7k4i60v"; depends=[]; };
hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.32.0"; sha256="0ns6qz5fmwbdf0hlymwzgzgqaqa95cnwwvdrrw4pszzi86pagqag"; depends=[]; };
hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.32.0"; sha256="1jv8ikdb2cy8a8bm375w24zkw9ldfdijnnsxrj95h35f4blnx3d7"; depends=[]; };
hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.32.0"; sha256="0gi7m2qprggaq0fxwda0n7fyk6zvvz60avby78j75xipw4mq1dy3"; depends=[]; };
harbChIP = derive2 { name="harbChIP"; version="1.28.0"; sha256="0nnyvs1xdiq9ik4jig87xgdq784fzq7imd5v4i0l20p80w4cccs5"; depends=[Biobase Biostrings IRanges]; };
healthyFlowData = derive2 { name="healthyFlowData"; version="1.28.0"; sha256="0fky9w11k2zv58768w5ivafdvh3nfg53vx74cmq6jmgcp4lfg714"; depends=[flowCore]; };
hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.28.0"; sha256="1isdnvalsd61kqh6r4dq76bgds35f7ag0309cxwji6dqhw7qs3dc"; depends=[]; };
hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.10.0"; sha256="0hrmqxp66mw2s04jdh5f5866a75kpbg4nf796f2fb090hi83gqrv"; depends=[Biobase]; };
hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.28.0"; sha256="0qfbf1m4pwfq26svcc20pn6yqz7hh6q9hmvgz832c1mgy1mza9ab"; depends=[]; };
hgu2beta7 = derive2 { name="hgu2beta7"; version="1.30.0"; sha256="1kiyj39hqpvjz21v64k59vpahxq1b0wa3bdvbvdsak2g6py6f512"; depends=[]; };
hmyriB36 = derive2 { name="hmyriB36"; version="1.26.0"; sha256="0i66kbdrry5qclh615w94gpr5g7h5kpqzs6x4sb290al7kvya8q7"; depends=[Biobase GGBase]; };
humanStemCell = derive2 { name="humanStemCell"; version="0.30.0"; sha256="02vh8xykbjc287hkayp7i6v2rydn26g0jj6njr189dha9y7amrlc"; depends=[Biobase hgu133plus2_db]; };
kidpack = derive2 { name="kidpack"; version="1.32.0"; sha256="1knzb2rwa58i0d8snfgq342qm9qch3zvv38fid5cs3a4kvy9301p"; depends=[Biobase]; };
leeBamViews = derive2 { name="leeBamViews"; version="1.26.0"; sha256="0x0i4v8li4ina1rdxps51m69mlla2v7w8f4rsnsa4fhljjizilii"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
leukemiasEset = derive2 { name="leukemiasEset"; version="1.26.0"; sha256="1v2axfyjmsnqgjrwa9pzjmdkyiyrdhc6hia3blrmhlj2wi307pnq"; depends=[Biobase]; };
lumiBarnes = derive2 { name="lumiBarnes"; version="1.30.0"; sha256="09nindp52bh8pzyjb5mq2210i5643srmzrzwf65p02y9444jx74b"; depends=[Biobase lumi]; };
lungExpression = derive2 { name="lungExpression"; version="0.28.0"; sha256="1zvq681zi26568ispcsnk6y6g2vxm8zqmglwg5k31p8hk3j3dc45"; depends=[Biobase]; };
lydata = derive2 { name="lydata"; version="1.16.0"; sha256="07w87qv15physk1h04l06514z20hh1y1hm9g13swj381ivd81g2a"; depends=[]; };
mAPKLData = derive2 { name="mAPKLData"; version="1.22.0"; sha256="1003cf8malvh9jzykcps7704053g8nlys1ibaixa8m097flrh1y1"; depends=[]; };
mCSEAdata = derive2 { name="mCSEAdata"; version="1.10.1"; sha256="1fbalqmy2f3wvlnhm0x3jz7hjbrdfxzi2xd4728q9xkhijg4rzca"; depends=[]; };
macrophage = derive2 { name="macrophage"; version="1.6.0"; sha256="0f3khznbvixqm31avs3bzjp2g6n9ggk82rwklg59r32f81vdv263"; depends=[]; };
mammaPrintData = derive2 { name="mammaPrintData"; version="1.26.0"; sha256="12b1cxfhvv88xz28qgqdpj67ymz54h48pi38pnagmg0521qp06cx"; depends=[]; };
maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.34.0"; sha256="0km1q7ghvpd67ayqkck2wjcvklpjwwc65ymind04m7rjvlka64v9"; depends=[]; };
mcsurvdata = derive2 { name="mcsurvdata"; version="1.8.0"; sha256="0ydqlyb5pbk7rqfbs4vwix616kmjva7c73r6mdklw4a1z0p4faa9"; depends=[AnnotationHub Biobase ExperimentHub]; };
metaMSdata = derive2 { name="metaMSdata"; version="1.26.0"; sha256="19ckgnlr6vv501ral8lqw0g1wglq40qyh6pbk7dcx6hjicdgyga1"; depends=[]; };
methyvimData = derive2 { name="methyvimData"; version="1.12.0"; sha256="0wmyjnx8y3vpfayyfxl5mfcfknhibhgdkmzczj50w8ix94pg8wgc"; depends=[minfi]; };
miRNATarget = derive2 { name="miRNATarget"; version="1.28.0"; sha256="1wygl7gh37hf750wk6z32yhjgmqdk51mphigf7kq8hibdzfc8cc1"; depends=[Biobase]; };
miRcompData = derive2 { name="miRcompData"; version="1.20.0"; sha256="01zdmn0mk7mlrkf6f59693bq6pjzgyd9i30zcajii0f1qj5y326b"; depends=[]; };
microRNAome = derive2 { name="microRNAome"; version="1.12.0"; sha256="0fhhgxczj4qjzj7qhcz61yh65dn24pwbzh4ysd3qqajgzaamnwjc"; depends=[SummarizedExperiment]; };
minfiData = derive2 { name="minfiData"; version="0.36.0"; sha256="0gdyyy30608l0ldyv8w8vzy12m92vk179frwmi7q6mrhpwx71pxm"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.16.0"; sha256="1m4s8wmz8ipb3bjn661k7dn0q6yphsfym0ascy40p2av6zhq5ajw"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
minionSummaryData = derive2 { name="minionSummaryData"; version="1.20.0"; sha256="1p2pn2gs0d6s4jy5qsyr26vd8cbc48j13496f3n5j6a2c4sqgcs8"; depends=[]; };
mitoODEdata = derive2 { name="mitoODEdata"; version="1.26.0"; sha256="06vr3r4a3995p99v19a4jk3idgqqgdm5fki400z5x62pmnc2r4k3"; depends=[]; };
mosaicsExample = derive2 { name="mosaicsExample"; version="1.28.0"; sha256="1z6d4nn36qby1fyi7w9r0dmilqx0w9zid6lzg5swcc4jx58744a3"; depends=[]; };
mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.28.0"; sha256="0a039mmcawwmr8mmapw6asw6rp9xj29s03zvkndhpg7lx0ss4yi8"; depends=[]; };
msPurityData = derive2 { name="msPurityData"; version="1.18.0"; sha256="1j0r8kbwfxaw612c2314cw8as3c50yzj46zl5ggqqw6112shjb4i"; depends=[]; };
msd16s = derive2 { name="msd16s"; version="1.10.0"; sha256="0i4vlssc85k8mcwsbk5dq35xcq8dzwf7bx0ib5np779z8ry92rl3"; depends=[Biobase metagenomeSeq]; };
msdata = derive2 { name="msdata"; version="0.30.0"; sha256="17vnrvif0i0swxm3vzgmd2ci2wbqc28hg136hpwmid528dpn6myi"; depends=[]; };
msqc1 = derive2 { name="msqc1"; version="1.18.0"; sha256="0mp5fg3i5sq7xpdslr237b684y0kgkwni7h024pf2ddp46vl3mji"; depends=[lattice]; };
mtbls2 = derive2 { name="mtbls2"; version="1.20.1"; sha256="1c0jsdlgpjvi096ls2kljhy0rgbw0c9a07fkjdp4sg08j881qvyc"; depends=[]; };
muscData = derive2 { name="muscData"; version="1.4.0"; sha256="1wl85wwd62341cczyan8ybad5mr359hl9i7fnjcs7mcar3x9d1xf"; depends=[ExperimentHub SingleCellExperiment]; };
mvoutData = derive2 { name="mvoutData"; version="1.26.0"; sha256="0jcqbbi6qnbmcx8f6j4awrkw5ayx7rkcd669clxk9qinanyj540y"; depends=[affy Biobase lumi]; };
nanotubes = derive2 { name="nanotubes"; version="1.6.0"; sha256="1njdg1j3f7aszy0msvdh2l1kbllijpp88r788fayh5xn7s0zn4qd"; depends=[]; };
oct4 = derive2 { name="oct4"; version="1.6.0"; sha256="0m5hwf9lwpaxc5ivplp60598ps9hf16m7bm6gd0ybz6ppf29b4f2"; depends=[]; };
optimalFlowData = derive2 { name="optimalFlowData"; version="1.2.0"; sha256="0sn3zxbydd3fcn0zw9di5zrfdb827r6vqr5n0j71fssgflakf2gk"; depends=[]; };
pRolocdata = derive2 { name="pRolocdata"; version="1.28.0"; sha256="0wpnn2ldalcfcvh5b22ilavw4gzz9i2731bva3sk29r0v42nyg2f"; depends=[Biobase MSnbase]; };
parathyroidSE = derive2 { name="parathyroidSE"; version="1.28.0"; sha256="0xpn0fa4yd1rjdzfvzvaz27qfaccbkw6n46731ya8l7vj5p69ash"; depends=[SummarizedExperiment]; };
pasilla = derive2 { name="pasilla"; version="1.18.1"; sha256="1b9d9yyjzbazjbfpdlmc2izhrr73q54826bd9gsa2rfr2cxksy6r"; depends=[]; };
pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.28.0"; sha256="0hf0qblpf4hjcvpqlr609pic859264jwnfx4lr92l39jg839r9z1"; depends=[]; };
pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.20.0"; sha256="1241i0p6yxhmsw4jq3msc15h3mypajfb8mlp8ngzdmbqyfkz7hwp"; depends=[]; };
pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.26.0"; sha256="092kgmcfcgyw7wfkl93d6xw8zdx8rxgv3537midzkxv79w44va8x"; depends=[]; };
pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.26.0"; sha256="0j8qpx9xmfgbbj9q48ry1vgcikh0hd1a4ym2k47kcxgffbml8ibq"; depends=[]; };
pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.26.0"; sha256="1b6q90c9dp94mhg38ds2z5rqk7f6pl4macv5knj35hlbn858y434"; depends=[]; };
pcxnData = derive2 { name="pcxnData"; version="2.12.0"; sha256="1cvhakxq4ddlfsn7ddja5xzhf7882wfrcapi037vh0f3rnb70q57"; depends=[]; };
pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.28.0"; sha256="1cnzw244jwkp3zpip7v9kvaj383bzdfvjxjpm4mapwlmx1068h16"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pepDat = derive2 { name="pepDat"; version="1.10.0"; sha256="0d5adrh8b9i7xbhi5vrfdijfw20pvl0j07gvwdc6ifcyfc47dd5q"; depends=[GenomicRanges]; };
plasFIA = derive2 { name="plasFIA"; version="1.18.0"; sha256="1hryz1agnlx7hrylxjspciw97slza6fbrwg68mqrkl8xl9z8sn3b"; depends=[proFIA]; };
ppiData = derive2 { name="ppiData"; version="0.28.0"; sha256="0rkmw86xzcjhahfdmrnani2ipps626jj68sgbh26bj2d809jc177"; depends=[AnnotationDbi graph]; };
prebsdata = derive2 { name="prebsdata"; version="1.26.0"; sha256="182fll78mvn3bqvvwz7pirr830yw0iqvynscjxvgh19fj5gj9mmp"; depends=[]; };
prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.18.0"; sha256="1anbpjlrwvnrh5l2v9v34rrws1jw6i5zv352dklhqb9ayw25p8pm"; depends=[Biobase]; };
prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.18.0"; sha256="04gly2fxyngwbsz748my157358a7h0qqiqvg6bvm5zap0x93j3i9"; depends=[Biobase]; };
prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.18.0"; sha256="1z7fv7wnqs5d8m56kcizdrjh85fbykrb2r42xbg5l2vj5vgapsf4"; depends=[Biobase]; };
prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.18.0"; sha256="0fljj4ybrpry7sjq7l1g9kxv44gyqpih31ysiqbc6sday2az4k6a"; depends=[Biobase]; };
prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.18.0"; sha256="1kdrc8nxwdr8yf5b24jvlx9cb05iflvvxpc3ix2fsivzfhnh9d20"; depends=[Biobase]; };
pumadata = derive2 { name="pumadata"; version="2.26.0"; sha256="1k3yvpgpbyhnncxa6fgqyaw23ym8z8dqi6fbskg6k8s1a8ddrz66"; depends=[Biobase oligo puma]; };
pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.4.0"; sha256="0hwcrhb305kq9d104n4l024ywvxissjhr5pyp2vgc9n1y13q53hm"; depends=[ExperimentHub]; };
qPLEXdata = derive2 { name="qPLEXdata"; version="1.8.0"; sha256="0mp4sa27k0ar6xbjjn0vpyf7hsq4fsnn6fmif1a5x03q8wjbbnn7"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
rRDPData = derive2 { name="rRDPData"; version="1.10.0"; sha256="0r5zjf9aklhczshgafdmq21dq24ax5vr4akn2ivymarriwxdry1h"; depends=[rRDP]; };
rcellminerData = derive2 { name="rcellminerData"; version="2.12.0"; sha256="00awxpisrhpqqs80jkmjjk7d8gqchzihw95bp7ix0dr4hif0rxvm"; depends=[Biobase]; };
restfulSEData = derive2 { name="restfulSEData"; version="1.12.0"; sha256="0z66kkwwdwkpkbdxzs3mwv34y4r20wsz82337wvx5mz2hix7y3zg"; depends=[ExperimentHub SummarizedExperiment]; };
rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.28.0"; sha256="1za1qxvrxg5x8v5vmy9n4mknli9ljnap2acr08fqqr7l87dkrahk"; depends=[]; };
sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.14.1"; sha256="1v691pdllj2nsvarli36xdgl1fsqwd2z6m5kfd9lp18sa3913w2l"; depends=[SummarizedExperiment]; };
scRNAseq = derive2 { name="scRNAseq"; version="2.4.0"; sha256="10wq3n2v88rhaddvda627d5lghlxgvkwr3v8i2smkvcpwiw8q3cq"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; };
scTHI_data = derive2 { name="scTHI.data"; version="1.2.0"; sha256="0igwi7mnv6fksym5vk9m9gmrz8gbdrfsbybd4rqw8dwx1dab4a8h"; depends=[]; };
seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.22.0"; sha256="1csngkb6a39z6mg1dav5fq1s3hymg89zcfk8djyllwgii98s2p98"; depends=[]; };
seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.26.0"; sha256="0v0f4fkc5v3z4zp3dfp882mrapzmslmvgffrfszy1cln14w4hl7q"; depends=[]; };
seqc = derive2 { name="seqc"; version="1.24.0"; sha256="021nvhm5r8n4rdrpl81x516jhm5mbwd5g4xwgaf6clz5vaa84w1v"; depends=[Biobase]; };
serumStimulation = derive2 { name="serumStimulation"; version="1.26.0"; sha256="1qsrf53prbmighqwacpvbhq5c30cgnvy7d2mhrnl6bh2bllhbim7"; depends=[]; };
sesameData = derive2 { name="sesameData"; version="1.8.10"; sha256="1aa3x49h9cnx9y8m2l6y9673772nj4is44igs1r2cwg0c6nv40mh"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; };
seventyGeneData = derive2 { name="seventyGeneData"; version="1.26.0"; sha256="17x8clcw46s7rdv7kqsail2gx19h634q5nkpf7sphhs5i2yv042l"; depends=[]; };
shinyMethylData = derive2 { name="shinyMethylData"; version="1.10.0"; sha256="11y87nbj1npww9r4l7h4sy6fdlp2gd92hgp8zw34y1x1h3fqrpml"; depends=[]; };
signatureSearchData = derive2 { name="signatureSearchData"; version="1.4.0"; sha256="1fhyi6dc185ff417516m6pn5iyrq05sl5f7qcbys4916lmhqkj46"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; };
simpIntLists = derive2 { name="simpIntLists"; version="1.26.0"; sha256="0z2yll47ym8zc26mnn6ra7xii714fai3pxijck92spw667br3sbx"; depends=[]; };
spatialLIBD = derive2 { name="spatialLIBD"; version="1.2.1"; sha256="1zvf0jygcn0bq789kn8aswdx4sf7sgkzy8na14r3qzmxal3lm9q3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer readbitmap S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; };
spqnData = derive2 { name="spqnData"; version="1.2.0"; sha256="163gq01flwf6hssb3l9kal4317gzd5wyf6zk21i0axng8dd3mq0r"; depends=[SummarizedExperiment]; };
stemHypoxia = derive2 { name="stemHypoxia"; version="1.26.0"; sha256="1vfz250ms272qbddsfwqjpjzkn5l24ik1jpfym5s6p7jc4mvvljp"; depends=[]; };
stjudem = derive2 { name="stjudem"; version="1.30.0"; sha256="02m160cv70zl011dbhkx7b4qh84lpniymzc46cdlmgvx2v2p765v"; depends=[]; };
synapterdata = derive2 { name="synapterdata"; version="1.28.0"; sha256="1v4w285m61v8gpm474nj9lskwwp3j9q65pna96nabilkrdyydcns"; depends=[synapter]; };
systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.18.2"; sha256="09bcpxa2l8xrc68cmp57d8f2ysv5jp8hrwl55bwvs4z5wwmgspzg"; depends=[BiocGenerics jsonlite remotes]; };
tartare = derive2 { name="tartare"; version="1.4.0"; sha256="0hsm7z2isyskmmk6im88jhzvxir5ax7nvrgsbkk2dks7gkqqwsv1"; depends=[AnnotationHub ExperimentHub]; };
tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.8.0"; sha256="1yx3j10fy8ki4ghmmjsjqs8wp59pfl2kp2l9pgjn4fpd5vnd5kvp"; depends=[bsseq ExperimentHub knitr]; };
timecoursedata = derive2 { name="timecoursedata"; version="1.0.0"; sha256="0y4qgypk04qn2ni7n30fqjvmcmbr5af33pvzpkk8g459vxp4ai9n"; depends=[SummarizedExperiment]; };
tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.28.0"; sha256="12r9gm491v4srz6xa9mhwlj3r6iv51qd63f9jy29wc8cr4j4zzr1"; depends=[]; };
tinesath1probe = derive2 { name="tinesath1probe"; version="1.28.0"; sha256="0k8yalkdj0dpwyshi4dhg7nff1wxbjwpxqfkckyp66xhjw0wacga"; depends=[AnnotationDbi]; };
tissueTreg = derive2 { name="tissueTreg"; version="1.10.0"; sha256="0qwc7i8az7dk20r37kwaw9gmqj72xq8aqw0z65c20k1hb8nl10gd"; depends=[]; };
tofsimsData = derive2 { name="tofsimsData"; version="1.18.0"; sha256="0g9gy50waj0v0qjpbyz1vrx8i60r7xsd5lrnd1acpgwkz72f60lg"; depends=[]; };
topdownrdata = derive2 { name="topdownrdata"; version="1.12.0"; sha256="1g3mr37s7a3brmc97smkm2sl4lirx6yalb8dbfnwfzf5ccwbrp2h"; depends=[topdownr]; };
tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.28.0"; sha256="0z0fkm33siaq3h6nbjwa0dici1r0haghh8grvpsg60vn6hiifp7l"; depends=[Biobase]; };
tximportData = derive2 { name="tximportData"; version="1.18.0"; sha256="0warrg8381k22gadh74lzbigfz4ccr4h5b6mb34ny25hypf9zpsf"; depends=[]; };
vulcandata = derive2 { name="vulcandata"; version="1.12.0"; sha256="0iwmjdrwqnjdwb3dhcspn539vy30w74rh1qd4yhwh23iilrikhvp"; depends=[]; };
waveTilingData = derive2 { name="waveTilingData"; version="1.26.0"; sha256="0mhav14kjqcjp381wb5ghmxqm0ad0krjk42c1jsqdi1jmqf9bg27"; depends=[]; };
yeastCC = derive2 { name="yeastCC"; version="1.30.0"; sha256="1vxa6r1kplg5drj698alr5s58gfj98hcf92vklvvayn1hshl793v"; depends=[Biobase]; };
yeastExpData = derive2 { name="yeastExpData"; version="0.36.0"; sha256="1yc3h3lap8ih2qampq7f178rb7v5n8bz7i3wlf415zqn5cmn1vgc"; depends=[graph]; };
yeastGSData = derive2 { name="yeastGSData"; version="0.28.0"; sha256="0s8hxyhbs5px9k5lhm3snaw3xiz2h8328fgxaacacnk2hwn742gv"; depends=[]; };
yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.26.0"; sha256="0dnp3zbf2hj736jwjhmqdx0lq0pxl9ysx8xbzxzarqhh55bbnbip"; depends=[]; };
yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.28.0"; sha256="161ar7jhzqcrfihzrc8pxxh1vhvc3vp9a504gwkni028dqljm8gv"; depends=[]; };
yri1kgv = derive2 { name="yri1kgv"; version="0.32.0"; sha256="0bamz28dp3pxad45qm26mvi1wxmvdsq69ndsiqayi4k2m4qxvl0y"; depends=[Biobase GGBase]; };
yriMulti = derive2 { name="yriMulti"; version="0.19.0"; sha256="1n4wcz2vns9bshhnl55zwf6545qlyfl2hl8wis9nfwxq3rj1xqrv"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; };
zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.10.0"; sha256="1865ygc4rfk56hjpnamzwlgrc9axgn4zxk2jhlrfpajb50npxw0n"; depends=[]; };
}

File diff suppressed because it is too large Load diff

File diff suppressed because it is too large Load diff

View file

@ -248,7 +248,6 @@ let
Cardinal = [ pkgs.which ];
chebpol = [ pkgs.fftw ];
ChemmineOB = [ pkgs.openbabel pkgs.pkg-config ];
cit = [ pkgs.gsl_1 ];
curl = [ pkgs.curl.dev ];
data_table = [pkgs.zlib.dev] ++ lib.optional stdenv.isDarwin pkgs.llvmPackages.openmp;
devEMF = [ pkgs.xorg.libXft.dev pkgs.x11 ];
@ -323,14 +322,12 @@ let
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
RODBC = [ pkgs.libiodbc ];
rpanel = [ pkgs.bwidget ];
rpg = [ pkgs.postgresql ];
Rpoppler = [ pkgs.poppler ];
RPostgreSQL = [ pkgs.postgresql pkgs.postgresql ];
RProtoBuf = [ pkgs.protobuf ];
RSclient = [ pkgs.openssl.dev ];
Rserve = [ pkgs.openssl ];
Rssa = [ pkgs.fftw.dev ];
rtiff = [ pkgs.libtiff.dev ];
runjags = [ pkgs.jags ];
RVowpalWabbit = [ pkgs.zlib.dev pkgs.boost ];
rzmq = [ pkgs.zeromq pkgs.pkg-config ];
@ -491,9 +488,7 @@ let
"DeducerText"
"Demerelate"
"detrendeR"
"dgmb"
"dpa"
"DSpat"
"dynamicGraph"
"dynBiplotGUI"
"EasyqpcR"
@ -568,7 +563,6 @@ let
"PredictABEL"
"prefmod"
"PrevMap"
"ProbForecastGOP"
"r4ss"
"RandomFields"
"rareNMtests"

View file

@ -3,7 +3,7 @@ library(data.table)
library(parallel)
cl <- makeCluster(10)
biocVersion <- 3.11
biocVersion <- 3.12
snapshotDate <- Sys.Date()-1
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")

View file

@ -15,6 +15,7 @@ let
mlgmpidl
num
ocamlgraph
stdlib-shims
why3
yojson
zarith
@ -37,7 +38,7 @@ stdenv.mkDerivation rec {
nativeBuildInputs = [ autoconf wrapGAppsHook ];
buildInputs = with ocamlPackages; [
ncurses ocaml findlib ltl2ba ocamlgraph yojson menhirLib camlzip
ncurses ocaml findlib ltl2ba ocamlgraph ocamlgraph_gtk yojson menhirLib camlzip
lablgtk coq graphviz zarith apron why3 mlgmpidl doxygen
gdk-pixbuf
];

View file

@ -2,16 +2,16 @@
rustPlatform.buildRustPackage rec {
pname = "bacon";
version = "1.1.5";
version = "1.1.6";
src = fetchFromGitHub {
owner = "Canop";
repo = pname;
rev = "v${version}";
sha256 = "0wyx216q9q7y60bnnw4cbpv9zlbnjm2hwq0llkjw60fp3qalj9am";
sha256 = "sha256-0/fQhBHkoI/0PhuUDLGfyjytgEEJWSr1P67Rh0vGDnA=";
};
cargoSha256 = "1pii5ajl3xgylrm20pkwbd1lk7gv0pshl1cxjfna0l63q56v7f21";
cargoSha256 = "sha256-O1jJXnvPLxJmcnf3qpdcpdrogQ7FtjHF8uUxQRWLDyg=";
buildInputs = lib.optional stdenv.isDarwin CoreServices;

View file

@ -95,33 +95,33 @@ rec {
headers = "01x6a0r2jawjpl09ixgzap3g0z6znj34hsnnhzanavkbds0ri4k6";
};
electron_11 = mkElectron "11.4.8" {
x86_64-linux = "742cfa025fa64cfa02c4eb8584e9f2f15321b795688a5c1a6597b1e1da1e98e7";
x86_64-darwin = "b251b02f70a9a0e63866836c0638200cca05392cdec1b5271ebbe0c016276364";
i686-linux = "a7813cfa785e8e9a440db4cfb0d98dcd5ba52041fb018856d9c544a43ae55357";
armv7l-linux = "a72e346a569f582fc40e9ebbfd6f6faf5c32dd6e83fdcd5335c46e332dbe5ee6";
aarch64-linux = "acd4e32851cc0fdfe1a62df90a6c8b02139e510b7c3212bd4ac57f767e85dfe4";
aarch64-darwin = "ee28b1d525ae5be60253430200692f3fe6b4d588921aedd246bfc851014127ea";
headers = "0l8pc4grabj641wf1q37bc19w0y9913v4c9s8pbniz7py1a6rpmn";
electron_11 = mkElectron "11.4.9" {
x86_64-linux = "c18ed2e16e60ca1eddd01ab2e4fff2bbfd9f197ab17b7577155f05687297d7be";
x86_64-darwin = "ec34759ae768e55449c23244283c8af3dc5d5ab533d64cea0231be0a0878ebdd";
i686-linux = "ef9125268e03f2f1d13c2b2505ba2529af88a8397cad640bd35116caae7ab296";
armv7l-linux = "b43c00f4a0b4cf8affa09cedff93066d23d57a6148af383a8fc9f6d25b63d449";
aarch64-linux = "3df038538056fc4a918afe07138052b1f53648c411add47c3a18abe8a30e6f71";
aarch64-darwin = "acf880cfaea9ca382831df165fa7ef7e0b442c663d5a586cdfe0baa1aea4e17c";
headers = "1wfhc22g680pvv85rq8d8lw4vphpr700fmzs3nwxixxnzhp1sb79";
};
electron_12 = mkElectron "12.0.11" {
x86_64-linux = "e3bac4b81f0d99447f8ff7edf88f2e9941699d30cf1f41a41af7a93b199e805b";
x86_64-darwin = "eeee59eb751e0d95538a40c74aa1563ee4485903eb028c462872004cc8dfdabb";
i686-linux = "97fe1b7f7414a9cf1416d4a2d61139cc71f50765f48df02b6ccb4c1af62f0d97";
armv7l-linux = "c43b28d5d15b303a7643e7d2320f03577e27d90a13f4fa1dc3e14f81630ab62e";
aarch64-linux = "b5f17959b8cb55f0557f4a0a37cd99c1c6d1d48fad839402383d9087175b4f44";
aarch64-darwin = "e5f88751bfb1344ea2f1345b56e95093ebfa850761b53752fbcf8c6d8de0f824";
headers = "11801qplb7s7zs0yjmk4436yp3xg2szn7hzag75v3g026k2ay1xz";
electron_12 = mkElectron "12.0.12" {
x86_64-linux = "98e7cc5dd3f161c37cbbd9aef90d55c51531a4bad8221a9d1f92e78014758054";
x86_64-darwin = "3a39933c1c83406e4ddbce2af193e9a6b7b77f418c4f1d5e7b8f9edc348acd15";
i686-linux = "2a06936fa13929342ebb7521d2e3e8b4a7a08ac1d757c0521a047b4cf0a979fc";
armv7l-linux = "c0a2c13d99a1152aa6252fd8237207a6f395b70d0890eba5b7209a03beb9a6ec";
aarch64-linux = "a92e2eaebab75b93eda0bc523ba9262a32db95c7546c095fee93d39a304521a0";
aarch64-darwin = "810a1f36574a2db8d7d4022a042a65cceec3443644487868c5609b16b5dfe29f";
headers = "1qis2k8yc7g1klvhiysjrgl5gclx4idxdz60kh8ldrji5a0lgha1";
};
electron_13 = mkElectron "13.1.2" {
x86_64-linux = "1391bae19ff6446fb56f00ba5597bb92a509b6e808534087c153b9fcebddbeef";
x86_64-darwin = "b8c5eca90864ce4a91e1fdb8a932598fad31922407b502eeb868a508fd26347f";
i686-linux = "40d6c373b5e77b80285715fb66acb6562ea1d685f6644d463fb427f846f09fdc";
armv7l-linux = "ce31a8d455663f6e85ed75fa9ac1007b55d6fd0b9445d9e51e2a103706e49e94";
aarch64-linux = "06965ade2aaf4dce78b5d5b075fc09c225d7d83817297338fc26eb4d33ebb289";
aarch64-darwin = "dde2b3fd2ac52097481ff5bfd54c358432f7f2402b0b20ae32681ae6e5a4d451";
headers = "1qrw1cpj63757c582zzz0gchaq0w0xq1mm5702q34xyv06mh5h93";
electron_13 = mkElectron "13.1.3" {
x86_64-linux = "33646b1bace221edd636f172b5d3ae391fe519dd6a49aaeef4e50916d636fcfb";
x86_64-darwin = "246356862f4e97bdba31d9b0f2dadc45b1d7c689d0762bc27b89251cafcdd14c";
i686-linux = "1237ab5043b22f00236d52e12b771778f740fd0d5c06d0f5aee4219afb9b5b38";
armv7l-linux = "7106ef6720162d9f38927583968dd9b45f4c678d4bdbe549604aa3b6a40f7f50";
aarch64-linux = "3213bb087e6f3a9091c2fe2de13a597a9d122735a996872ba51e17c138148cae";
aarch64-darwin = "35bb2b36e73df228c295c5e820ac7f4206b3ea9e546b61e32a4b080fd1f08234";
headers = "020xka91w4i5p24i56zlk2i6xsynwwvryh3fim336mmkjryqhqxp";
};
}

View file

@ -2,16 +2,16 @@
rustPlatform.buildRustPackage rec {
pname = "flip-link";
version = "0.1.3";
version = "0.1.4";
src = fetchFromGitHub {
owner = "knurling-rs";
repo = pname;
rev = "v${version}";
sha256 = "0x6l5aps0aryf3iqiyk969zrq77bm95jvm6f0f5vqqqizxjd3yfl";
sha256 = "sha256-LE0cWS6sOb9/VvGloezNnePHGldnpfNTdCFUv3F/nwE=";
};
cargoSha256 = "13rgpbwaz2b928rg15lbaszzjymph54pwingxpszp5paihx4iayr";
cargoSha256 = "sha256-8WBMF5stMB4JXvYwa5yHVFV+3utDuMFJNTZ4fZFDftw=";
buildInputs = lib.optional stdenv.isDarwin libiconv;

View file

@ -2,13 +2,13 @@
buildGoModule rec {
pname = "go-mockery";
version = "2.8.0";
version = "2.9.0";
src = fetchFromGitHub {
owner = "vektra";
repo = "mockery";
rev = "v${version}";
sha256 = "sha256-sOZig47KKKGJmV9QNCa+TwYCxemeVl6xssfExSaaFjY=";
sha256 = "sha256-lR4EhFddP+ae1xpRW82w53yNoBG4RpMHk8w4XFGcli8=";
};
vendorSha256 = "sha256-//V3ia3YP1hPgC1ipScURZ5uXU4A2keoG6dGuwaPBcA=";

View file

@ -1,18 +1,26 @@
{ buildGoModule, fetchgit, lib, jq, makeWrapper }:
{ buildGoModule, fetchFromSourcehut, lib, jq, installShellFiles, makeWrapper, scdoc }:
buildGoModule rec {
pname = "ijq";
version = "0.3.4";
version = "0.3.5";
src = fetchgit {
url = "https://git.sr.ht/~gpanders/ijq";
src = fetchFromSourcehut {
owner = "~gpanders";
repo = pname;
rev = "v${version}";
sha256 = "ZKxEK6SPxEC0S5yXSzITPn0HhpJa4Bcf9X8/N+ZZAeA=";
sha256 = "sha256-0xLmjidPxjSkYmLI4lWieT2rswZsWBY/IUXFOrUFAMo=";
};
vendorSha256 = "04KlXE2I8ZVDbyo9tBnFskLB6fo5W5/lPzSpo8KGqUU=";
vendorSha256 = "sha256-7UuQXnQdlUMC0ZIgHydQ5bZMB5XrE7dhx5+1NI+zFkM=";
nativeBuildInputs = [ makeWrapper ];
nativeBuildInputs = [ installShellFiles makeWrapper scdoc ];
ldflags = [ "-s" "-w" "-X main.Version=${version}" ];
postBuild = ''
scdoc < ijq.1.scd > ijq.1
installManPage ijq.1
'';
postInstall = ''
wrapProgram "$out/bin/ijq" \

View file

@ -18,6 +18,9 @@ stdenv.mkDerivation rec {
GRAALVM_HOME = graalvm11-ce;
CLOJURE_LSP_JAR = jar;
CLOJURE_LSP_XMX = "-J-Xmx4g";
patches = lib.optionals stdenv.isDarwin [ ./disable-check-toolchain.patch ];
buildInputs = [ graalvm11-ce ];
@ -52,7 +55,7 @@ stdenv.mkDerivation rec {
description = "Language Server Protocol (LSP) for Clojure";
homepage = "https://github.com/clojure-lsp/clojure-lsp";
license = licenses.mit;
maintainers = [ maintainers.ericdallo ];
maintainers = with maintainers; [ ericdallo babariviere ];
platforms = graalvm11-ce.meta.platforms;
};
}

View file

@ -0,0 +1,12 @@
diff --git a/graalvm/native-unix-compile.sh b/graalvm/native-unix-compile.sh
index ec0e49f..e19a120 100755
--- a/graalvm/native-unix-compile.sh
+++ b/graalvm/native-unix-compile.sh
@@ -17,6 +17,7 @@ CLOJURE_LSP_XMX=${CLOJURE_LSP_XMX:-"-J-Xmx4g"}
args=("-jar" "$CLOJURE_LSP_JAR"
"-H:+ReportExceptionStackTraces"
+ "-H:-CheckToolchain"
"--verbose"
"--no-fallback"
"--native-image-info"

View file

@ -1,5 +1,5 @@
{ stdenv, nix, perlPackages, buildEnv
, makeWrapper, autoconf, automake, libtool, unzip, pkg-config, sqlite, libpqxx
, makeWrapper, autoconf, automake, libtool, unzip, pkg-config, sqlite, libpqxx_6
, top-git, mercurial, darcs, subversion, breezy, openssl, bzip2, libxslt
, perl, postgresql, nukeReferences, git, boehmgc, nlohmann_json
, docbook_xsl, openssh, gnused, coreutils, findutils, gzip, xz, gnutar
@ -82,7 +82,7 @@ in stdenv.mkDerivation rec {
inherit stdenv src version patches;
buildInputs =
[ makeWrapper autoconf automake libtool unzip nukeReferences sqlite libpqxx
[ makeWrapper autoconf automake libtool unzip nukeReferences sqlite libpqxx_6
top-git mercurial /*darcs*/ subversion breezy openssl bzip2 libxslt
perlDeps perl nix
postgresql # for running the tests

View file

@ -4,16 +4,16 @@
rustPlatform.buildRustPackage rec {
pname = "cargo-embed";
version = "0.10.1";
version = "0.11.0";
src = fetchFromGitHub {
owner = "probe-rs";
repo = pname;
rev = "v${version}";
sha256 = "1z8n883cb4jca3phi9x2kwl01xclyr00l8jxgiyd28l2jik78i5k";
sha256 = "151zdnv4i0dgkk4w3j2a1sdklcxw07bgqjs7sv6lvkylrx8dfrxa";
};
cargoSha256 = "1ir9qngxmja6cm42m40jqbga9mlfjllm23ca26wyigjv3025pi6i";
cargoSha256 = "00p2rwqrax99kwadc8bfq8pbcijals2nzpx43wb03kwxl4955wn9";
nativeBuildInputs = [ pkg-config rustfmt ];
buildInputs = [ libusb1 libftdi1 ];

Some files were not shown because too many files have changed in this diff Show more