From c38ffa7b7d7234cf6ad64d0b01a22f9d7c8c4d77 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 19 Sep 2013 09:36:40 +1000 Subject: [PATCH] Added expression for PLINK --- .../science/biology/plink/default.nix | 24 +++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 ++ 2 files changed, 26 insertions(+) create mode 100644 pkgs/applications/science/biology/plink/default.nix diff --git a/pkgs/applications/science/biology/plink/default.nix b/pkgs/applications/science/biology/plink/default.nix new file mode 100644 index 00000000000..fa6dcaa82ed --- /dev/null +++ b/pkgs/applications/science/biology/plink/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchurl, zlib, unzip }: + +stdenv.mkDerivation { + name = "plink-1.07"; + + src = fetchurl { + url = "http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip"; + sha256 = "4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b"; + }; + + buildInputs = [ zlib unzip ] ; + + installPhase = '' + mkdir -p $out/bin + cp plink $out/bin + ''; + + meta = { + description = "Whole genome association toolkit"; + homepage = "http://pngu.mgh.harvard.edu/~purcell/plink/"; + license = "GNUv2"; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 2db066ac23d..01aa470f246 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -9499,6 +9499,8 @@ let pal2nal = callPackage ../applications/science/biology/pal2nal { }; + plink = callPackage ../applications/science/biology/plink/default.nix { }; + ### SCIENCE/MATH