Merge pull request #107550 from tfmoraes/pydicom-2.1.2

This commit is contained in:
Sandro 2021-01-04 12:16:54 +01:00 committed by GitHub
commit f14e007296
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -1,29 +1,55 @@
{ stdenv
, buildPythonPackage
, fetchPypi
, fetchFromGitHub
, isPy27
, pytest
, pytestrunner
, pytestCheckHook
, numpy
, pillow
}:
buildPythonPackage rec {
version = "2.1.1";
let
pname = "pydicom";
disabled = isPy27;
version = "2.1.2";
src = fetchPypi {
inherit pname version;
sha256 = "72a11086f6a277c1529a552583fde73e03256a912173f15e9bc256e5b28f28f1";
src = fetchFromGitHub {
owner = "${pname}";
repo = "${pname}";
rev = "v${version}";
sha256 = "sha256-iExy+mUs1uqs/u9N6btlqyP6/TvoPVsuOuzs56zZAS8=";
};
# Pydicom needs pydicom-data to run some tests. If these files are downloaded
# before the package creation, it'll try to download during the checkPhase.
test_data = fetchFromGitHub {
owner = "${pname}";
repo = "${pname}-data";
rev = "bbb723879690bb77e077a6d57657930998e92bd5";
sha256 = "sha256-dCI1temvpNWiWJYVfQZKy/YJ4ad5B0e9hEKHJnEeqzk=";
};
in
buildPythonPackage {
inherit pname version src;
disabled = isPy27;
propagatedBuildInputs = [ numpy pillow ];
checkInputs = [ pytest pytestrunner pytestCheckHook ];
disabledTests = [ "test_invalid_bit_depth_raises" ];
# harmless failure; see https://github.com/pydicom/pydicom/issues/1119
checkInputs = [ pytestrunner pytestCheckHook ];
# Setting $HOME to prevent pytest to try to create a folder inside
# /homeless-shelter which is read-only.
# Linking pydicom-data dicom files to $HOME/.pydicom/data
preCheck = ''
export HOME=$TMP/test-home
mkdir -p $HOME/.pydicom/
ln -s ${test_data}/data_store/data $HOME/.pydicom/data
'';
# This test try to remove a dicom inside $HOME/.pydicom/data/ and download it again.
disabledTests = [
"test_fetch_data_files"
];
meta = with stdenv.lib; {
homepage = "https://pydicom.github.io";