Commit graph

80 commits

Author SHA1 Message Date
Frederik Rietdijk dc04d776a3 mirtk: use python3 2021-07-27 20:42:00 +02:00
Felix Buehler 58a2d4b666 development: /s/name/pname&version/ 2021-07-02 00:03:10 +02:00
Pavol Rusnak 03518371af
oobicpl: unstable-2016-03-02 -> unstable-2020-08-12 2021-04-17 18:45:19 +02:00
Pavol Rusnak bc7f4759ec
bicpl: unstable-2017-09-10 -> unstable-2020-10-15 2021-04-17 18:44:13 +02:00
Sandro Jäckel 3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Ben Siraphob 66e44425c6 pkgs/development/libraries: stdenv.lib -> lib 2021-01-21 19:11:02 -08:00
zowoq 31f5dd3f36 treewide: editorconfig fixes
- remove trailing whitespace
- use spaces for indentation
2021-01-20 09:11:11 +10:00
Ben Siraphob 3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
Renato Alves 019fa5f608
htslib: 1.10.2 -> 1.11 (#100812) 2020-10-29 11:18:29 +01:00
Ben Darwin e20652da9b elastix: 5.0.0 -> 5.0.1; unbreak OS X build 2020-10-17 11:36:31 -07:00
Lassulus f849b13978
Merge pull request #98571 from bcdarwin/gifticlib
gifticlib: init at unstable-2020-07-07
2020-10-08 21:48:31 +02:00
Ben Darwin 44d854af30 bicgl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:19 -04:00
Ben Darwin 85946918ac oobicpl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:17 -04:00
Ben Darwin 2c33e9d1a4 bicpl: fix LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:15 -04:00
Ben Darwin da69e470f2 EBTKS: update LIBMINC_DIR due to libminc update 2020-10-06 15:31:15 -04:00
Ben Darwin 8a3c9812cc gifticlib: init at unstable-2020-07-07 2020-09-23 12:07:37 -04:00
Ben Darwin 98512f3eaa nifticlib: 2.0.0 -> 3.0.1 2020-09-09 15:26:04 -04:00
Ben Darwin 7f656f3ef6 bpp-popgen: init at 2.4.1 2020-05-25 21:12:17 -04:00
Ben Darwin a53b27829c bpp-phyl: init at 2.4.1 2020-05-25 21:10:59 -04:00
Ben Darwin 8d712ccc16 bpp-seq: init at 2.4.1 2020-05-25 21:09:52 -04:00
Ben Darwin adc7b4c979 bpp-core: init at 2.4.1 2020-05-25 21:08:31 -04:00
Ben Darwin 5caa76705b elastix: update for ITK 5.1.0
- fetch patches to build elastix 5.0 with ITK 5.1
- update 'platforms': builds on Darwin, fails on aarch64
2020-05-05 00:08:04 -04:00
Ben Darwin fe07e2b2ac elastix: enable tests 2020-04-21 07:54:59 +02:00
Ben Darwin 30cafee8b6 elastix: python -> python3 2020-04-21 07:54:59 +02:00
Michael Reilly 84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
R. RyanTM 940d12bf5d htslib: 1.9 -> 1.10.2 2020-01-06 09:16:51 -08:00
Frederik Rietdijk f08e3e38d4 Merge master into staging-next 2020-01-02 21:41:13 +01:00
Robin Gloster 2157dcd141
treewide: installFlags is a list 2019-12-30 13:22:43 +01:00
Merijn Broeren 133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Linus Heckemann 2c19725202 mirtk: enable tbb support for multithreading 2019-12-30 01:16:08 +01:00
Renaud 5411dbda33
Merge pull request #71710 from bcdarwin/fix-elastix
elastix: 4.9.0 -> 5.0.0 (and mark unbroken)
2019-11-18 23:23:16 +01:00
Ben Darwin b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
Ben Darwin 736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Linus Heckemann 5aa4b19946 treewide: mark some broken packages as broken
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
2019-10-08 17:14:26 +02:00
Miguel Madrid Mencía 148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
volth 46420bbaa3 treewide: name -> pname (easy cases) (#66585)
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
2019-08-15 13:41:18 +01:00
volth f3282c8d1e treewide: remove unused variables (#63177)
* treewide: remove unused variables

* making ofborg happy
2019-06-16 19:59:05 +00:00
Matthew Bauer 6ed49262f5 treewide: remove BUILD_TESTING flag
This is now set by CMake
2019-03-11 10:11:28 -04:00
Matthew Bauer d492f53faf
Merge pull request #50527 from matthewbauer/ninja-check-phase
Add check phase to ninja setup hook
2018-11-20 16:55:12 -06:00
Matthew Bauer 2c47a4229f treewide: remove ctest usages
These are already in the generated makefiles!
2018-11-18 19:31:02 -06:00
schneefux d81a96e601 mirtk: use fetchFromGitHub instead of fetchgit 2018-10-08 14:33:55 +02:00
Orivej Desh f0c0e2acc6 htslib: 1.7 -> 1.9 2018-09-21 22:42:28 +00:00
Vladimír Čunát 14aa936ec5
Merge branch 'staging-next' into staging 2018-08-17 20:53:27 +02:00
Vladimír Čunát cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Ben Darwin 0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Jan Malakhovski b2563a55b7 nifticlib: disable tests 2018-08-11 09:35:38 +00:00
John Ericson db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
Ben Darwin 7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Ben Darwin 1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00