Commit graph

48 commits

Author SHA1 Message Date
Markus Kowalewski 6dba41fbcb
mpi: use mpi attribute consistently as the default MPI implementations
Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
 {
   mpi = super.mpich;
 }

All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
2021-01-23 12:15:13 +01:00
Ben Siraphob 8c5d37129f pkgs/tools: stdenv.lib -> lib 2021-01-15 17:12:36 +07:00
John Ericson f52263ced0 treewide: Start to break up static overlay
We can use use `stdenv.hostPlatform.isStatic` instead, and move the
logic per package. The least opionated benefit of this is that it makes
it much easier to replace packages with modified ones, as there is no
longer any issue of overlay order.

CC @FRidh @matthewbauer
2021-01-03 19:18:16 +00:00
Michael Reilly 84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
tviti 2cfad8fa28
Revert "hdf5-fortran: Mark broken on Darwin" (#80419)
This reverts commit 8836c4d71b.

Closes #79952
2020-02-18 14:52:22 -05:00
R. RyanTM 7f8fb20f57 hdf5: 1.10.5 -> 1.10.6 2020-01-06 05:59:41 -08:00
Thomas Tuegel 734979f794 hdf5: Fix flavored builds with multiple outputs 2019-09-29 11:23:58 +02:00
Thomas Tuegel 6cbf0b4bd2
hdf5: Use multiple outputs to reduce closure size 2019-09-25 13:07:20 -05:00
volth 46420bbaa3 treewide: name -> pname (easy cases) (#66585)
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
2019-08-15 13:41:18 +01:00
Markus Kowalewski 015888ce7f hdf5: 1.10.4 -> 1.10.5 2019-04-10 18:53:51 +02:00
Markus Kowalewski 99ca454f23
hdf5: add openmpi-4 compatibility patches 2019-02-21 15:08:33 +01:00
R. RyanTM 8684ef15a1 hdf5: 1.10.3 -> 1.10.4 (#50100)
* hdf5: 1.10.3 -> 1.10.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdf5-threadsafe/versions

* hdf5: update meta.license

HDF5 is licensed under a BSD 3-clause variant
2018-11-15 17:04:24 +01:00
R. RyanTM fb70ad3d60 hdf5-threadsafe: 1.10.2 -> 1.10.3
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdf5-threadsafe/versions.
2018-08-24 03:57:05 -07:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
R. RyanTM e9dbe1a2a3 hdf5-threadsafe: 1.10.1 -> 1.10.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5perf_serial help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5cc --help’ got 0 exit code
- found 1.10.2 with grep in /nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2
- directory tree listing: https://gist.github.com/aedb29e367d0b709b77bbdc794b96dd6
2018-04-07 08:36:04 -07:00
Roberto Di Remigio eb43cc569a
hdf5: 1.8.18 -> 1.10.1 2017-11-21 22:08:07 +01:00
Tuomas Tynkkynen 8836c4d71b hdf5-fortran: Mark broken on Darwin
Never succeeded.

https://hydra.nixos.org/build/62044922
2017-09-30 21:29:50 +03:00
Sukant Hajra 82667fee37 hdf5: remove references to stdenv.cc
The build provides as text a summary of the build, including the
absolute path of the compiler used for compilation.  Unfortunately, this
pulls in stdenv.cc as a transitive closure.

So this change just calls remove-references-to as a postInstall step for
the one stdenv.cc dependency.

See #29889 for details.
2017-09-28 10:41:38 +02:00
Tuomas Tynkkynen a7440aa7c6 hdf5: Re-enable on darwin
Oops, ab71280823 intended to only disable hdf5-fortran but also
disabled the others that are fine.
2017-09-22 19:56:49 +03:00
Tuomas Tynkkynen ab71280823 darwin: Disable some packages that have never built successfully
mate.mate-desktop: https://hydra.nixos.org/build/61110037
gdmap: https://hydra.nixos.org/build/61144743
redsocks: https://hydra.nixos.org/build/61123106
resolv_wrapper: https://hydra.nixos.org/build/61121132
ogmtools: https://hydra.nixos.org/build/61108726
mp3info: https://hydra.nixos.org/build/61139015
lxappearance-gtk3: https://hydra.nixos.org/build/61126327
hdf5-fortran: https://hydra.nixos.org/build/61146631
pqiv: https://hydra.nixos.org/build/61124724
2017-09-22 17:25:38 +03:00
Dmitry Kalinkin 8b8e363979 hdfview: init at 2.14
hdf_java: init at 3.3.2
2017-08-22 18:31:39 -04:00
mimadrid 09e0cc7cc7
Update homepage attributes: http -> https
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
2017-08-03 11:56:15 +02:00
Frederik Rietdijk 3d2cfabad6 hdf5: add comment about multiple outputs 2017-05-29 21:25:42 +02:00
John Ericson 4c0d7da183 Get rid of all with { inherit... } and just used let inherit...
The old forms presumably predates, or were made in ignorance of,
`let inherit`. This way is better style as the scoping as more lexical,
something which Nix can (or might already!) take advantage of.
2017-03-30 03:05:05 -04:00
Lancelot SIX 16eb67ac9c
hdf5: 1.8.16 -> 1.8.18
For release announcement, see
https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-1.8.18-RELEASE.txt
2016-12-01 17:23:15 +01:00
Frederik Rietdijk 9d25dc12d9 Revert "hdf5: 1.8.16 -> 1.10.0-patch1"
This reverts commit 1c1a03f0d3.

hdf5 1.10 is not yet supported by all tools/libraries (e.g pytables, a dependency of pandas, requires hdf5 1.8).
2016-08-28 19:28:31 +02:00
David Guibert 1c1a03f0d3 hdf5: 1.8.16 -> 1.10.0-patch1 2016-08-28 11:42:21 +02:00
Tuomas Tynkkynen 21f17d69f6 treewide: Add lots of meta.platforms
Build-tested on x86_64 Linux & Mac.
2016-08-02 21:42:43 +03:00
Frederik Rietdijk 46378eb128 hdf5: propagate optional zlib dependency 2016-07-19 14:12:13 +02:00
Lancelot SIX afa9e26130 pkgs.hdf5: Fix mpi build
@vcunat fixed the assertion (which was his wrong suggestion).
2015-11-20 11:25:47 +01:00
Lancelot SIX 4d28d46c45 hdf5: 1.8.15-patch1 -> 1.8.16 (close #11153) 2015-11-20 11:25:47 +01:00
Vladimír Čunát 6a2a2f4ad5 hdf5: refactor the expression
It's possible enableShared has little impact,
as we pass --disable-static to all packages by default.
2015-11-11 15:17:40 +01:00
Lancelot SIX 27eeb48cd8 pkgs.hdf5: 1.8.14 -> 1.8.15-patch1 2015-10-19 13:07:53 +00:00
Lancelot SIX 924c38214d pkgs.hdf5: Add c++ and fortran variants 2015-10-19 12:57:24 +00:00
Longrin Wischnewski 73aef348bb hdf5: move to a more stable URL 2014-11-18 11:14:17 +01:00
Lengyel Balázs 79fc5bde48 updated hdf5 to version HDF5-1.8.14 2014-11-16 09:27:32 +01:00
Andreas Herrmann 37b064fcc7 hdf5: Optional enableShared flag
Required by h5py in mpi mode.
2014-07-18 22:41:56 +02:00
Andreas Herrmann 8346343aa5 hdf5: Add mpi support
Optionally, build the parallel version of hdf5.
2014-07-18 22:41:55 +02:00
Andreas Herrmann 5a96043637 hdf5: Update to 1.8.13 2014-06-22 20:05:20 +02:00
Andreas Herrmann d1f7bc7bcf hdf5: Add szip as an optional dependency
This adds additional compression modes to hdf5.

Note: The szip license may not be compatible with everyone's use case. Hence,
it is an optional dependency.
2014-06-22 20:05:20 +02:00
Andreas Herrmann 4528ebf509 hdf5: Add zlib as optional dependency
This adds addition compression modes to the hdf5 library.

I am adding this, because pytables depends on it.
2014-06-22 20:05:20 +02:00
Bjørn Forsman 083d0890f5 More description fixes
* Remove package name
* Start with upper case letter
* Remove trailing period

Also reword some descriptions and move some long descriptions to
longDescription.

I'm not touching generated packages.
2013-10-06 12:01:38 +02:00
Evgeny Egorochkin 9a3d4fba5e hdf5: fix version to match tarball 2013-07-14 02:08:49 +03:00
Evgeny Egorochkin 9c6f7cc9c1 Add package versions to some of the packages or fix existing ones to conform to nixpkgs conventions. 2013-06-07 03:15:45 +03:00
Cillian de Róiste 7f8ecc65ac hdf5: download URL no longer available for 1.8.5, upgrade to 1.8.10 2013-04-11 10:54:31 +02:00
Michael Raskin 2b1fe76307 Mandatory HDF5 sub-minor-version update with no old version copies around
svn path=/nixpkgs/trunk/; revision=25159
2010-12-16 20:19:43 +00:00
Rob Vermaas ec5dba7620 remove commented license attribute
svn path=/nixpkgs/trunk/; revision=22862
2010-08-02 09:09:25 +00:00
Rob Vermaas fb6ca79d35 HDF5 1.8.5
svn path=/nixpkgs/trunk/; revision=22861
2010-08-02 08:58:53 +00:00