Commit graph

1544 commits

Author SHA1 Message Date
Arcadio Rubio García 12c5dc343f picard-tools: 2.7.1 -> 2.17.4 2018-01-22 12:16:26 +00:00
Arcadio Rubio García c75e91a374 bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
Arcadio Rubio García 0d05bcae8c bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
Arcadio Rubio García 550e6146d4 igv: 2.3.98 -> 2.4.6 2018-01-21 21:07:44 +00:00
Sarah Brofeldt adf80590ae
Merge pull request #33924 from markuskowa/molden-pr
molden: init at 5.7
2018-01-21 12:19:48 +01:00
Miguel Madrid Mencía 8fb2be6772
weka: 3.8.1 -> 3.8.2 2018-01-18 15:25:35 +01:00
Yegor Timoshenko 506c89c30a maintainers: remove mornfall from packages 2018-01-17 05:17:33 +00:00
Markus Kowalewski 1c1e49a5c5
molden: init at 5.7 2018-01-15 23:06:41 -08:00
Ashley Gillman 245a67df8b dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
Ashley Gillman 271d4a7ca0 dcm2niix: init at 1.0.20170130 2018-01-15 16:45:03 +10:00
David Asabina b986078593 bitscope: refactored to pass nixpkgs-lint
The linter (nixpkgs-lint) was not able to find the bitscope packages
because `recurseIntoAttrs` was not applied to the suite's set.

The name supplied to `buildFHSUserEnv` produces a binary that
corresponds to the binary names in the deb packages (e.g.: bitscope-dso,
bitscope-chart, bitscope-logic, etc), however; this name does not
constitute a valid nixpkgs name. Valid nixpkgs names satisfy the
`/(.*)(-[0-9].*)$/` pattern, therefore a valid name is merged into the
derivation produced by `buildFHSUserEnv`.
2018-01-14 20:00:10 +01:00
adisbladis ff94fbc416
Merge pull request #33851 from vbgl/why3-0.88.3
why3: 0.88.1 -> 0.88.3
2018-01-15 01:27:45 +08:00
adisbladis a41d7b9ea1
Merge pull request #33839 from mimadrid/update/gephi-0.9.2
gephi: 0.9.1 -> 0.9.2
2018-01-15 01:10:52 +08:00
Vincent Laporte aee1cebda7
why3: 0.88.1 -> 0.88.3 2018-01-14 05:51:06 +00:00
Miguel Madrid Mencía eb21bf3d99
cytoscape: 3.5.1 -> 3.6.0 2018-01-13 23:21:49 +01:00
Miguel Madrid Mencía 111d4dbc06
gephi: 0.9.1 -> 0.9.2 2018-01-13 23:18:26 +01:00
adisbladis 5f232de6cd
qgroundcontrol: 2.9.4 -> 3.2.7, unbreak build 2018-01-13 04:03:38 +08:00
Luz e056315a3e librepcb-unstable: init at 2017-12-29 (#33630) 2018-01-11 09:20:00 +00:00
Austin Seipp 4d4340805b symbiyosys: 2017.12.06 -> 2018.01.10
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-10 14:00:58 -06:00
Symphorien Gibol bf49c616ee giac: fix build
giac was broken somewhere between 310ad4 and b33b4a, see
https://hydra.nixos.org/build/67137469
libgfortran.so.3 was not found
2018-01-10 18:42:38 +01:00
Samuel Dionne-Riel 7b97c8c0c8 treewide: homepage+src updates (found by repology, #33263) 2018-01-05 20:42:46 +01:00
Austin Seipp ebeb95d18b z3: 4.5.0-2017-11-06 -> 4.6.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-03 21:44:56 -06:00
Vladimír Čunát 1fcd92ce92
Merge branch 'master' into staging
A few thousand rebuilds from master, again.
Hydra: ?compare=1422362
2017-12-31 09:53:49 +01:00
Orivej Desh e87a82b010 cntk: mark as broken
It never succeeded to build.  @abbradar did not respond at
94dc37d622
2017-12-31 08:14:14 +00:00
John Ericson 4d2b763817
Merge pull request #26805 from obsidiansystems/cross-elegant
Make cross compilation elegant
2017-12-30 22:58:02 -05:00
John Ericson 046f091e0d treewide: Don't use envHook anymore
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
2017-12-30 22:04:22 -05:00
Austin Seipp ff555bdaeb tamarin-prover: enable tests
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:39:38 -06:00
Austin Seipp bae2e7ceb3 nixpkgs: add sapic as a dependency to tamarin-prover
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp 3813ab2589 nixpkgs: init sapic 0.9
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp a31bdc0739 nixpkgs: add 'graphviz' to tamarin-prover dependencies
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp abcfa6f608 nixpkgs: add tamarin-prover 1.3.0 (dev) tool
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 18:23:15 -06:00
David Asabina 810ec3f8bd bitscope: init at 2017-12-28 2017-12-30 21:58:27 +01:00
Frederik Rietdijk 2d0bead714 Merge remote-tracking branch 'upstream/master' into HEAD 2017-12-30 17:04:54 +01:00
Orivej Desh 77cc63950a wxmaxima: build with cmake
Fixes reported version number: see
https://github.com/NixOS/nixpkgs/pull/31657#issuecomment-354414642

"make check" did not run any tests with autotools, and is not defined with
cmake. ("make test" is not defined too.)
2017-12-29 21:00:03 +00:00
Vladimír Čunát f29000b002
Merge branch 'master' into staging
Hydra: ?compare=1421760
2017-12-29 10:13:33 +01:00
Robin Gloster ee1c85aee9 mariadb: lib -> connector-c 2017-12-29 02:18:35 +01:00
Nick Hu 8640e286b4 fdr: 4.2.0 -> 4.2.3 2017-12-29 02:01:31 +01:00
Vincent Laporte b320538f4c
coq: lablgtk is only needed for coqide 2017-12-23 11:11:56 +00:00
John Wiegley f962f33593 Specify the coq version in a more consistent location 2017-12-21 01:24:35 -08:00
Justin Bedo a49c91f655
snpeff: 4.3p -> 4.3t 2017-12-21 10:52:26 +11:00
Vincent Laporte 4c454a3208
coq: minor cleaning 2017-12-18 15:30:36 +00:00
Orivej Desh c13c93f03b drat-trim: fix build on darwin 2017-12-17 13:19:34 +00:00
Orivej Desh fe9bf3ed23
Merge pull request #32648 from berce/upstream-kicad
kicad: init unstable at version 2017-12-11
2017-12-17 05:03:29 +00:00
Orivej Desh c780dba59c kicad: show version 2017-12-17 05:02:51 +00:00
Orivej Desh f314157041 kicad-unstable: set version 2017-12-17 04:49:00 +00:00
Orivej Desh d8f668c7b3
Merge pull request #32643 from kini/drat-trim
drat-trim: init at 2017-08-31
2017-12-17 00:31:25 +00:00
Keshav Kini 7b6b074829 drat-trim: init at 2017-08-31
DRAT-trim is a tool which can be used to make SAT solvers (such as
glucose and glucose-syrup, which are in nixpkgs) more useful by
checking their work.  It has become well-accepted in the SAT solver
development community and has been used in the annual SAT competitions
for the last few years.
2017-12-17 00:27:52 +00:00
Bert Moens 5e0344dce9 kicad: add support for oce, ngspice and scripting 2017-12-17 00:20:45 +00:00
Bert Moens af5272f599 kicad: add unstable version 2017-12-17 00:10:28 +00:00
Vincent Laporte 12c5fe3e2d ocamlPackages.cairo2: 0.4.6 -> 0.5 2017-12-16 12:14:35 +01:00
John Wiegley 40627000f7 coq_8_7: 8.7.0 -> 8.7.1 2017-12-15 22:09:15 -08:00
John Wiegley 2e93f93b2a z3_4_5_0: New expression, to access the release version's API 2017-12-14 23:32:37 -08:00
Pascal Wittmann aacf756ed0
Merge pull request #32538 from vbgl/ott-0.27
ott: 0.25 -> 0.27
2017-12-14 09:07:46 +01:00
Vincent Laporte b212125b54
Merge pull request #32250 from vbgl/coq-clean
coq_HEAD, coqPackages_8_4: remove
2017-12-11 18:13:24 +01:00
Vincent Laporte 1ccd3b9755
ott: 0.25 -> 0.27 2017-12-10 11:49:05 +00:00
Vladimír Čunát 2309acf723
Merge branch 'master' into staging 2017-12-09 21:00:07 +01:00
markuskowa 66da9b9f8f gpredict: init at 1.3 (#32436) 2017-12-09 09:45:29 +00:00
Vladimír Čunát 6f5d989478
treewide: checkMeta fixes for x86_64-linux 2017-12-07 07:50:47 -05:00
Orivej Desh 9f8ec7e4d3 stp: disable parallel building 2017-12-07 08:52:42 +00:00
Orivej Desh 812e0bced1 shogun: fix parallel building 2017-12-07 08:52:42 +00:00
Austin Seipp 520fa67746 nixpkgs: symbiyosys 2017.11.05 -> 2017.12.06
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-06 22:07:57 -06:00
Vincent Laporte e36cb93283
coq_HEAD: remove 2017-12-02 08:38:58 +00:00
Keshav Kini 2d91801242 glucose-syrup: Remove unused fetchurl argument 2017-12-01 21:13:21 -08:00
Jörg Thalheim ae096444a2
simgrid: 3.15 -> 3.17 (#32114)
* simgrid: 3.15 -> 3.17 + clean + add options

* Add myself as maintainer

* Fix typo
2017-12-01 22:14:24 +00:00
Orivej Desh 1f99fd6965 libminc: fix build after hdf5 upgrade by using hdf5_1_8 2017-12-01 00:37:29 +00:00
Peter Simons b0f82f0f2d R: update to 3.4.3 2017-11-30 18:45:48 +01:00
MERCIER Michael 42ec4556bd Fix typo 2017-11-28 13:13:01 +01:00
Vincent Laporte a8da423332
acgtk: fix for yojson ≥ 1.4 2017-11-27 17:00:15 +00:00
MERCIER Michael 8fa00adf1a Add myself as maintainer 2017-11-27 17:58:49 +01:00
MERCIER Michael 0cace1fbd2 simgrid: 3.15 -> 3.17 + clean + add options 2017-11-27 17:50:25 +01:00
Orivej Desh 4f73b3162b treewide: preset windres missing to fix builds on Linux
https://github.com/NixOS/nixpkgs/pull/30484#issuecomment-345899910
2017-11-21 04:27:10 +00:00
Maximilian Bosch 38af8ec720
stellarium: 0.15.0 -> 0.16.1
The 0.16-releases contain several useful new features:
https://launchpad.net/stellarium/0.16/0.16.1

I also added myself as maintainer to have more people available if the
package breaks a release.
2017-11-19 12:01:15 +01:00
rybern ef0486b1f9 vcftools: init at 0.1.15 (#31339) 2017-11-16 09:52:56 +02:00
Orivej Desh 089e0aaf72 pulseview: fix build 2017-11-16 00:40:16 +00:00
Joerg Thalheim 67092ffd43 spyder: 2.3.8 -> 3.2.4 2017-11-15 15:49:05 +00:00
Moritz Kiefer c0f08557b9 why3: 0.87.3 -> 0.88.1 2017-11-15 10:15:12 +01:00
Dan Haraj bdce7d3a04 sc2-headless: add pysc2 minigame map pack 2017-11-14 14:37:53 -05:00
Peter Simons d70a021b95 maxima: 5.40.0 -> 5.41.0 2017-11-14 13:23:48 +01:00
Joerg Thalheim 21423521e6 wxmaxima: 15.04.0 -> 17.10.1
also fix crash at start-up due missing icons

fixes #18479
2017-11-14 11:28:00 +00:00
Renaud 2d8d35e342
Merge pull request #31564 from Mounium/aliza
aliza: 1.29.2->1.36.3
2017-11-12 22:07:01 +01:00
Katona László c2d9871823 aliza: 1.29.2->1.36.3 2017-11-12 17:46:37 +01:00
Michael Raskin eaaaebe00a golly: 2.8 -> 3.1 2017-11-11 15:31:37 +01:00
Michael Raskin 563b08c7c4 pari: 2.9.1 -> 2.9.3 2017-11-11 15:31:36 +01:00
Michael Raskin 20b6b3cf0e clingo: init at 5.2.2
Note that clasp (included in clingo) is already packaged separately, but
only an earlier version. As it is used by OPAM, but will stop being used
by OPAM later (and I want to grab the name for Clasp the Common Lisp
implementation), I decided to package clingo as a whole (as recommended),
but to leave clasp until OPAM stops needing it.
2017-11-10 14:04:32 +01:00
Austin Seipp 063e4dca79 z3: update to latest git
This has some nice improvements, like new string and real arithmetic solvers.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-11-09 13:20:01 -06:00
Michael Raskin 27f7999280 glucose, glucose-syrup: 4.0 -> 4.1 2017-11-08 09:55:29 +01:00
Michael Raskin 6475fa9b25
Merge pull request #31298 from timokau/sage-fix
sage: 6.8 -> 8.0
2017-11-06 01:25:28 +00:00
Michael Raskin 85eac6ff73
Restrict platforms to what is known to work. 2017-11-06 01:25:04 +00:00
Timo Kaufmann fe68ba81d2 sage: 6.8 -> 8.0
This "un-breaks" sage while also updating it to 8.0.

It compiles sage with its dependencies as one big pile, which is not
the best approach but definately better than nothing for now.

To be able to shrink the huge output pile a little, it also splits
docs from the rest of the output.
2017-11-05 17:37:40 -06:00
Austin Seipp 5fc4f17862 yices: 2.5.3 -> 2.5.4
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-11-05 12:49:38 -06:00
Austin Seipp e27e0ebe48 cvc4: unstable-2017-05-18 -> 1.5
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-11-05 12:49:38 -06:00
Austin Seipp 9cb5201d33 yosys/symbiyosys: 2017.10.16 -> 2017.11.05
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-11-05 12:49:38 -06:00
Ben Gamari 7eecac6f46 ngspice: Build shared library
This builds the libngspice shared library which is used by development
versions of kicad.
2017-11-02 19:26:06 -04:00
Piotr Bogdan 8904ce343a fix source root locations.
These have changed following commit
c3255fe8ec.

See also:

- https://github.com/NixOS/nixpkgs/pull/31004
- https://github.com/NixOS/nixpkgs/pull/31106
2017-11-02 13:53:36 +00:00
Daiderd Jordan b93df24078 pari: enable darwin build 2017-10-30 18:24:22 +01:00
Edward Tjörnhammar 9acbfbc7b7
shogun: init at 6.0.0 2017-10-29 10:20:55 +01:00
Edward Tjörnhammar 77d3869f27
colpack: init at 1.0.10 2017-10-29 10:20:54 +01:00
John Wiegley 89720d851a
coqPackages_8_7: New expression, but don't make it the default yet 2017-10-22 12:43:27 -07:00
Tuomas Tynkkynen a4833730c4 cntk: Disable parallel building
https://hydra.nixos.org/build/62781346
2017-10-22 18:19:03 +03:00
Ryan Bernstein 941014ffff bowtie2: init at 2.3.3.1 2017-10-22 00:11:49 +02:00