Commit graph

34429 commits

Author SHA1 Message Date
Franz Pletz c03bc57212
libgit2: 0.24.3 -> 0.24.6
Fixes the following vulnerabilities:

  * CVE-2016-10128
  * CVE-2016-10129
  * CVE-2016-10130
  * CVE-2017-5338
  * CVE-2017-5339
2017-01-11 06:50:54 +01:00
Franz Pletz 3ecfab8819
libgit2_0_21: remove, unused and probably vulnerable 2017-01-11 06:50:37 +01:00
Franz Pletz 85ac790666
gnutls35: 3.5.5 -> 3.5.8
Fixes the following security issues:

  * CVE-2017-5334
  * CVE-2017-5335
  * CVE-2017-5336
  * CVE-2017-5337

See https://www.gnutls.org/news.html#2017-01-09 for more information.
2017-01-11 06:47:36 +01:00
Franz Pletz 7165b38908
libtasn1: 4.8 -> 4.9 2017-01-11 06:47:35 +01:00
Franz Pletz 0e963d2563
gnutls33: 3.3.25 -> 3.3.26
Fixes the following security issues:

  * CVE-2017-5334
  * CVE-2017-5335
  * CVE-2017-5336
  * CVE-2017-5337

See https://www.gnutls.org/news.html#2017-01-09 for more information.
2017-01-11 06:47:35 +01:00
Franz Pletz cc40fadf62
gnutls: 3.4.16 -> 3.4.17 2017-01-11 06:44:00 +01:00
Anthony Cowley 084a76ef6f atlas: change platforms to unix
The build succeeds on darwin and linux.
2017-01-10 21:02:04 -05:00
Bart Brouns 5abcc7d22a lilv and sord: remove svn versions and deploy release version 2017-01-11 02:21:00 +01:00
Bart Brouns 1b8ad96858 serd: 0.20.0 -> 0.24.0 2017-01-11 02:17:46 +01:00
Bart Brouns 0b3795c642 sord: 0.12.2 -> 0.16.0 2017-01-11 02:17:45 +01:00
Bart Brouns 9e82d353e3 raul: svn 5675 -> git 2016-09-20 2017-01-11 02:17:44 +01:00
Bart Brouns 87ffcedd31 sratom: 0.4.6 -> 0.6.0 2017-01-11 02:17:43 +01:00
Bart Brouns deb6b8f2a2 lilv: 0.20.0 -> 0.24.0 2017-01-11 02:17:41 +01:00
Bart Brouns 60e06fb39f lv2: 1.12.0 -> 1.14.0 2017-01-11 02:17:40 +01:00
Bart Brouns 3c36c85b1c lv2-git: init at 2016-10-23 2017-01-11 02:17:39 +01:00
Daiderd Jordan 43266905d1 Merge pull request #21791 from LnL7/darwin-cairo-fixes
cairo related fixes
2017-01-11 00:45:16 +01:00
Daiderd Jordan cb061ef4f2
gst_plugins_base: add darwin frameworks 2017-01-10 23:32:32 +01:00
3noch 0d4d401b7f
nginx: add PageSpeed module (Linux only) 2017-01-10 17:26:50 -05:00
Stefan Götz 9280174493 mpv: 0.22.0 -> 0.23.0 2017-01-10 22:42:29 +01:00
Vladimír Čunát 0300418a69
Merge branch 'staging' 2017-01-10 21:13:18 +01:00
Alexander Kahl db90ac6fff openldap: load configuration files from global sysconfdir /etc (#21648) 2017-01-10 17:41:09 +01:00
Thomas Tuegel 9d35918f1a
kdeWrapper: reformat propagated-user-env-packages 2017-01-10 10:06:03 -06:00
Vladimír Čunát ee2edd4527
Merge branch 'master' into staging 2017-01-10 15:38:07 +01:00
Jörg Thalheim 3aca77a7f2
universal-ctags: 2016-12-17 -> 2017-01-08 2017-01-10 11:38:52 +01:00
Graham Christensen 1f700e6a9a Merge pull request #21773 from yurrriq/update/pkgs/development/tools/jid
jid: 0.6.1 -> 0.7.1
2017-01-09 21:25:40 -05:00
Thomas Tuegel 127b2fc7d8 Merge pull request #21771 from abbradar/kde-wrapper
kdeWrapper: postpone /share linking till final buildEnv
2017-01-09 20:23:01 -06:00
Graham Christensen f17decf096 Merge pull request #21767 from ryantm/bundler
bundler: 1.13.6 -> 1.13.7
2017-01-09 21:19:31 -05:00
Eric Bailey ae7511013b
jid: 0.6.1 -> 0.7.1 2017-01-09 18:41:53 -06:00
Daiderd Jordan bba12a6c90
Merge branch 'master' into staging 2017-01-09 23:57:47 +01:00
Nikolay Amiantov 41b69a09b6 spidermonkey_{31,38}: fix sed problem with build 2017-01-10 01:30:11 +03:00
Nikolay Amiantov 8422cef099 kdeWrapper: postpone /share linking till final buildEnv 2017-01-10 01:07:21 +03:00
Pascal Wittmann 655db9b266
ceptre: 2016-01-01 -> 2016-11-27 2017-01-09 21:36:36 +01:00
Pascal Wittmann a724f66b98
lirc: 0.9.3 -> 0.9.4 2017-01-09 21:31:05 +01:00
Daiderd Jordan ab0bb24973
Revert "cairo: Add ApplicationServices as propagatedBuildInput"
This reverts commit 0f67005c4a.
2017-01-09 20:58:27 +01:00
Pascal Wittmann fc56c8c5cd
global: 6.5.5 -> 6.5.6 2017-01-09 20:49:02 +01:00
Ryan Mulligan 605ec66342 bundler: 1.13.6 -> 1.13.7 2017-01-09 10:13:38 -08:00
Domen Kožar 464c79ea9f
turtle_1_3_0: fix build 2017-01-09 18:19:25 +01:00
Michael Raskin 5b4906ab49 nim: 0.15.2 -> 0.16.0 2017-01-09 13:06:14 +01:00
Michael Raskin 39ed261c4c Merge pull request #21632 from veprbl/sherpa_fix
sherpa: fix sqlite dependency
2017-01-09 09:58:22 +00:00
Michael Raskin e2b30dc0f9 Merge pull request #21635 from peterhoeg/p/tora
tora: init at 3.1
2017-01-09 09:49:00 +00:00
Michael Raskin b806408452 Merge pull request #21724 from ivan-tkatchev/pullrequest
gtest, gmock: fix broken package by updating to 1.8.0.
2017-01-09 09:31:17 +00:00
Michael Raskin 9b00d43ed5 Merge pull request #21750 from knedlsepp/fix-grib-problems
grib-api: 1.14.4 -> 1.19.0
2017-01-09 09:28:07 +00:00
Michael Raskin 370d94c243 Merge pull request #21758 from dtzWill/update/elfutils
elfutils: 0.165 -> 0.168
2017-01-09 09:26:28 +00:00
Dmitry Kalinkin f7173a9187
fastnlo: fix yoda interface 2017-01-09 02:24:27 -05:00
Dmitry Kalinkin bbc3082ebd
mcgrid: pkgconfig is the only way to locate mcgrid 2017-01-08 21:16:52 -05:00
Peter Hoeg 2190a84812 tora: init at 3.1 2017-01-09 09:26:46 +08:00
Jörg Thalheim bcf8d8c6ef Merge pull request #21634 from peterhoeg/f/qscint
qscintilla: 2.9 -> 2.9.4 and support for qt5
2017-01-08 23:43:24 +01:00
Jörg Thalheim 90ea0c000c
octave: 4.0.3 -> 4.2.0 2017-01-08 23:40:40 +01:00
Will Dietz 2afcf34281 elfutils: Update website and URL to new sourceware location. 2017-01-08 16:30:05 -06:00
Will Dietz 157b216852 elfutils: 0.165 -> 0.168 2017-01-08 16:07:43 -06:00
Peter Simons 6d58ab2edf jailbreak-cabal: ghc-HEAD needs version 1.3.2 due to API changes in Cabal
https://github.com/peti/jailbreak-cabal/issues/12
2017-01-08 21:11:18 +01:00
Peter Simons dd0d71727a git-annex: fix build 2017-01-08 21:11:18 +01:00
Peter Simons 667c4e4925 hackage-packages.nix: automatic Haskell package set update
This update was generated by hackage2nix v2.0.4-7-g48fad11 from Hackage revision
47c259fc33.
2017-01-08 21:11:17 +01:00
Peter Simons 9729a8d015 haskell-esqueleto: keep version 2.4.x around so that we can still build git-annex 2017-01-08 21:11:17 +01:00
Sebastian Hagen d042abef26 zlib: Fix zlib.net URL. (#21753)
Look for primary source file below
  http://zlib.net/fossils/ as opposed to
  http://zlib.net/
. zlib-1.2.8.tar.gz is still available at the former location, and will likely
remain there. In addition, it's important that the first URL work since zlib
is in the bootstrap path, and 16.09 (at least) bootstrap doesn't try to fetch
from later ones.
2017-01-08 18:09:57 +01:00
Moritz Ulrich 7435fefd26
rustc: Disable fragile tcp tests on Darwin
This is an alternative implementation of
https://github.com/NixOS/nixpkgs/pull/21741/files
2017-01-08 16:55:36 +01:00
Graham Christensen 07e425b9b9 Merge pull request #21749 from sifmelcara/update/crystal
crystal: 0.20.3 -> 0.20.4
2017-01-08 08:49:59 -05:00
Domen Kožar 8940c68c09
hydra: 2016-04-15 -> 2016-12-09
Fixes #19396 #21424
2017-01-08 14:40:12 +01:00
Vladimír Čunát abcd344ccb
perl-Compress-Raw-Zlib: try without testing for now
Tests got broken by zlib update.  Also 2.0.65 -> 2.0.71,
but the update didn't help with this unfortunately.
2017-01-08 14:31:55 +01:00
Vladimír Čunát 309c63c542
Merge branch 'master' into staging 2017-01-08 14:27:01 +01:00
Josef Kemetmueller 64e4b7ac42 grib-api: 1.14.4 -> 1.19.0
- Remove downloading of testdata during buildPhase to
  - fix hydra build
  - remove impurity
  - reduce traffic
- Bump version
- Add myself as a maintainer
2017-01-08 12:42:25 +01:00
Jay Mundrawala 3dc8b5d904 rustUnstableBin.rustc: Run patchelf on bin/rustdoc (#21746)
Cargo seems to run rustdoc and produces an annoying error when
it tries to run.
2017-01-08 10:53:44 +01:00
mingchuan e8c9a4b3ba crystal: 0.20.3 -> 0.20.4 2017-01-08 14:31:59 +08:00
Daiderd Jordan 826d6aa6cd Merge pull request #21382 from johbo/darwin-pygtk-quartz-backend
Darwin gtk2/pygtk quartz backend
2017-01-08 00:18:33 +01:00
tkatchev 9c2a222092 gtest, gmock: fix broken package by updating to 1.8.0. 2017-01-08 00:00:55 +03:00
Domen Kožar 372e04f189
libpqxx: use gnused_422 2017-01-07 20:16:17 +01:00
Matthew Bauer ea053cad7a gtk-mac-integration: init at 2.0.8 2017-01-07 19:21:42 +01:00
Johannes Bornhold 0f67005c4a cairo: Add ApplicationServices as propagatedBuildInput
Noticed that it caused depending packages to fail, like librsvg, imagemagiv, graphviz.
2017-01-07 19:21:42 +01:00
schneefux 96504cd75c pythonPackages.discordpy: 0.15.1 -> 0.16 2017-01-07 20:02:05 +02:00
Anmol Sethi 2ef6af7afd libtermkey: from 0.18 to 0.19 2017-01-07 19:59:45 +02:00
Johannes Bornhold 8f7adffe4d pygtk: Add flag -ObjC for darwin
Had to add this so that it was able to parse the headers from the frameworks.
2017-01-07 17:35:09 +01:00
Johannes Bornhold 5a572f8018 gtk2: Use quartz backend on darwin 2017-01-07 17:35:09 +01:00
Johannes Bornhold 9f31633a50 librsvg: Add framework ApplicationServices for darwin 2017-01-07 17:31:10 +01:00
Johannes Bornhold 354c91df2e pango: Add darwin frameworks for fond rendering 2017-01-07 17:31:10 +01:00
Johannes Bornhold bbdca635cf cairo: Add CoreText for darwin
This helps so that fonts are properly rendered in gtk when used with the backend
"quartz".
2017-01-07 17:31:10 +01:00
Shea Levy 71fc7f9748 ghc-head: Fixes for new base and Cabal 2017-01-07 10:28:48 -05:00
Domen Kožar 133ba5f08a
GHC: 8.0.2-rc2 -> 8.0.2 2017-01-07 16:17:54 +01:00
Gabriel Ebner da9e9061f1 haskellPackages.hledger-diff: 0.2.0.6 -> 0.2.0.7
Currently hledger-diff is broken because of the hledger-lib version
bump.
2017-01-07 15:16:36 +01:00
Peter Hoeg 427de85390 loki: init at 0.1.7 2017-01-07 20:49:54 +08:00
Graham Christensen 428927ffa6
openjpeg2: patch for multiple CVEs
-  Floating Point Exception (aka FPE or divide by zero) in
    opj_pi_next_cprl function in openjp2/pi.c:523 in OpenJPEG
    2.1.2. (CVE-2016-9112)

 -  There is a NULL Pointer Access in function imagetopnm of
    convert.c:1943(jp2) of OpenJPEG 2.1.2. image->comps[compno].data is
    not assigned a value after initialization(NULL). Impact is Denial of
    Service. (CVE-2016-9114)

 -  NULL Pointer Access in function imagetopnm of convert.c:2226(jp2) in
    OpenJPEG 2.1.2. Impact is Denial of Service. Someone must open a
    crafted j2k file. (CVE-2016-9116)

 -  Heap Buffer Overflow (WRITE of size 4) in function pnmtoimage of
    convert.c:1719 in OpenJPEG 2.1.2. (CVE-2016-9118)
2017-01-07 06:51:31 -05:00
Peter Simons c5f8c7fe36 Merge pull request #21722 from mimadrid/fix/r-modules
Fix a lot of rPackages
2017-01-07 12:19:42 +01:00
Dmitry Kalinkin 44a78fb0da
rivet: fix runtime on darwin 2017-01-07 03:00:04 -05:00
Shea Levy 845dd121f8 ghc-head: Put ./boot into commonPreConfigure 2017-01-06 22:10:29 -05:00
Shea Levy c5c7911ac2 libuv: disable getaddrinfo tests.
Seem to require network access, at least on darwin
2017-01-06 21:09:49 -05:00
Franz Pletz 887e703d42 Merge pull request #21640 from mguentner/cpp_ipfs_api_update
cpp-ipfs-api: 2016-11-09 -> 2017-01-04
2017-01-07 00:44:01 +01:00
Vladimír Čunát 030065f6bd
libpng: 1.6.27 -> 1.6.28 2017-01-06 22:46:25 +01:00
Thomas Tuegel 8633dab72a Merge pull request #21650 from dbalan/ldns-1.7.0
ldns 1.6.17 -> 1.7.0
2017-01-06 14:46:18 -06:00
Vladimír Čunát 948e9edce6
zlib: maintenance 1.2.8 -> 1.2.10
The removed CVEs should be fixed in the release.
2017-01-06 21:45:20 +01:00
Vladimír Čunát 5ab9e23561
gtk3: maintenance 3.22.5 -> 3.22.6 2017-01-06 21:36:21 +01:00
Vladimír Čunát 9a9912a3e4
harfbuzz: 1.3.4 -> 1.4.1 2017-01-06 21:35:56 +01:00
Vladimír Čunát 1e253d54f5
libpng12: security 1.2.56 -> 1.2.57
CVE-2016-10087
2017-01-06 21:15:46 +01:00
Vladimír Čunát 7bdf2a4498
gdk-pixbuf: maintenance 2.36.2 -> 2.36.3 2017-01-06 21:08:33 +01:00
mimadrid 8954412fcc
r-modules: fix snpStats package 2017-01-06 21:07:25 +01:00
mimadrid b5a0925663
r-modules: fix VariantAnnotation package 2017-01-06 21:07:25 +01:00
mimadrid 6540b6507d
r-modules: fix rtracklayer package 2017-01-06 21:07:25 +01:00
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00
mimadrid d7ac90dd0c
r-modules: fix rtfbs package 2017-01-06 21:05:53 +01:00
mimadrid fd175e4084
r-modules: fix Rssa package 2017-01-06 21:05:52 +01:00
mimadrid bd2aaada6e
r-modules: fix RSclient package 2017-01-06 21:05:52 +01:00
mimadrid 53235dbe14
r-modules: fix rphast package 2017-01-06 21:05:52 +01:00
mimadrid 780fb79e32
r-modules: fix Rmpfr package 2017-01-06 21:05:51 +01:00
mimadrid a58db75ccb
r-modules: fix rmatio package 2017-01-06 21:05:51 +01:00
mimadrid 674a2077dd
r-modules: fix rJava package 2017-01-06 21:05:51 +01:00
mimadrid 13a582688f
r-modules: fix RJaCGH package 2017-01-06 21:05:51 +01:00
mimadrid 9922867fa8
r-modules: fix Rhtslib package 2017-01-06 21:05:50 +01:00
mimadrid bb60f939ae
r-modules: fix Rhpc package 2017-01-06 21:05:50 +01:00
mimadrid e1bc505da9
r-modules: fix rggobi package 2017-01-06 21:05:50 +01:00
mimadrid 9f2b5e0425
r-modules: fix RGtk2 package 2017-01-06 21:05:50 +01:00
mimadrid 3342f8bd59
r-modules: fix RcppOctave package 2017-01-06 21:05:50 +01:00
mimadrid ba86a39645
r-modules: fix RcppCNPy package 2017-01-06 21:05:49 +01:00
mimadrid dd159d06b6
r-modules: fix rcdd package 2017-01-06 21:05:49 +01:00
mimadrid 8b229baf33
r-modules: fix rbamtools package 2017-01-06 21:05:49 +01:00
mimadrid 558f67e85f
r-modules: fix R2SWF package 2017-01-06 21:05:48 +01:00
mimadrid 277efe9896
r-modules: fix sysfonts package 2017-01-06 21:05:48 +01:00
mimadrid 062c9037d1
r-modules: fix PopGenome package 2017-01-06 21:05:48 +01:00
mimadrid c5ef08cc65
r-modules: fix PKI package 2017-01-06 21:05:48 +01:00
mimadrid 1e9071948f
r-modules: fix mwaved package 2017-01-06 21:05:48 +01:00
mimadrid 4e7de52c26
r-module: fix kza package 2017-01-06 21:05:47 +01:00
mimadrid debb12ce1a
r-module: fix jpeg package 2017-01-06 21:05:47 +01:00
mimadrid e3a2c97c7b
r-modules: fix gmp package 2017-01-06 21:05:47 +01:00
mimadrid 72eb6a8644
r-modules: fix fftwtools package 2017-01-06 21:05:47 +01:00
mimadrid 427c4d954a
r-modules: fix fftw package 2017-01-06 21:05:47 +01:00
mimadrid b88b8ea05b
r-modules: fix devEMF package 2017-01-06 21:05:47 +01:00
mimadrid 6c6aab3e5b
r-modules: fix cairoDevice package 2017-01-06 21:05:47 +01:00
mimadrid f717538866
r-modules: fix git2r package 2017-01-06 21:05:47 +01:00
mimadrid 88fcfafafe
r-modules: fix BayesXsrc package 2017-01-06 21:05:46 +01:00
mimadrid 6f9124e118
r-modules: fix Cairo package 2017-01-06 21:05:46 +01:00
Vladimír Čunát 5f5681ee7f
Merge branch 'master' into staging 2017-01-06 21:05:43 +01:00
Vladimír Čunát 1f7b090580
mesa: maintenance 13.0.2 -> 13.0.3 2017-01-06 21:05:08 +01:00
c0bw3b 6d3183e7da
nghttp2: refactor (close #21029)
Turning the dependencies unrelated to the base libnghttp2 into proper
options.  vcunat modified the commit slightly.
2017-01-06 21:03:11 +01:00
Domen Kožar f3381f0be2
electron: 1.2.2 -> 1.4.13 2017-01-06 19:00:17 +01:00
Peter Simons fb2e0e1eaa Merge pull request #21718 from mimadrid/fix/r-modules
r-modules: fix seewave package
2017-01-06 16:59:31 +01:00