Commit graph

1504 commits

Author SHA1 Message Date
adisbladis 7a2d35d9db
Merge pull request #34119 from arcadio/master
igv: 2.3.98 -> 2.4.6
2018-01-25 18:33:49 +08:00
Samuel Leathers efdb0983da
Merge pull request #34199 from arcadio/kallisto
kallisto: init at 0.43.1
2018-01-24 20:43:24 -07:00
Arcadio Rubio García a7333e9ced kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
Daiderd Jordan 5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00
Frederik Rietdijk 8510550b77
Merge pull request #34169 from Infinisil/add/almonds
almonds: init at 2015-12-27
2018-01-23 17:37:54 +01:00
Silvan Mosberger 8e8a259df4
almonds: init at 2015-12-27 2018-01-23 14:16:28 +01:00
adisbladis 266979a360
Merge pull request #34125 from arcadio/bwa
bwa: 0.7.16a -> 0.7.17
2018-01-23 20:12:56 +08:00
adisbladis b0603f514b
Merge pull request #34139 from arcadio/bedtools
bedtools: 2.26.0 -> 2.27.1
2018-01-23 12:56:01 +08:00
adisbladis 7490d4d698
Merge pull request #34140 from arcadio/picard
picard-tools: 2.7.1 -> 2.17.4
2018-01-22 23:57:10 +08:00
Arcadio Rubio García 612953567d bowtie2: 2.3.3.1 -> 2.3.4 2018-01-22 12:28:06 +00:00
Arcadio Rubio García 12c5dc343f picard-tools: 2.7.1 -> 2.17.4 2018-01-22 12:16:26 +00:00
Arcadio Rubio García c75e91a374 bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
Arcadio Rubio García 0d05bcae8c bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
Arcadio Rubio García 550e6146d4 igv: 2.3.98 -> 2.4.6 2018-01-21 21:07:44 +00:00
Sarah Brofeldt adf80590ae
Merge pull request #33924 from markuskowa/molden-pr
molden: init at 5.7
2018-01-21 12:19:48 +01:00
Miguel Madrid Mencía 8fb2be6772
weka: 3.8.1 -> 3.8.2 2018-01-18 15:25:35 +01:00
Yegor Timoshenko 506c89c30a maintainers: remove mornfall from packages 2018-01-17 05:17:33 +00:00
Markus Kowalewski 1c1e49a5c5
molden: init at 5.7 2018-01-15 23:06:41 -08:00
Ashley Gillman 245a67df8b dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
Ashley Gillman 271d4a7ca0 dcm2niix: init at 1.0.20170130 2018-01-15 16:45:03 +10:00
David Asabina b986078593 bitscope: refactored to pass nixpkgs-lint
The linter (nixpkgs-lint) was not able to find the bitscope packages
because `recurseIntoAttrs` was not applied to the suite's set.

The name supplied to `buildFHSUserEnv` produces a binary that
corresponds to the binary names in the deb packages (e.g.: bitscope-dso,
bitscope-chart, bitscope-logic, etc), however; this name does not
constitute a valid nixpkgs name. Valid nixpkgs names satisfy the
`/(.*)(-[0-9].*)$/` pattern, therefore a valid name is merged into the
derivation produced by `buildFHSUserEnv`.
2018-01-14 20:00:10 +01:00
adisbladis ff94fbc416
Merge pull request #33851 from vbgl/why3-0.88.3
why3: 0.88.1 -> 0.88.3
2018-01-15 01:27:45 +08:00
adisbladis a41d7b9ea1
Merge pull request #33839 from mimadrid/update/gephi-0.9.2
gephi: 0.9.1 -> 0.9.2
2018-01-15 01:10:52 +08:00
Vincent Laporte aee1cebda7
why3: 0.88.1 -> 0.88.3 2018-01-14 05:51:06 +00:00
Miguel Madrid Mencía eb21bf3d99
cytoscape: 3.5.1 -> 3.6.0 2018-01-13 23:21:49 +01:00
Miguel Madrid Mencía 111d4dbc06
gephi: 0.9.1 -> 0.9.2 2018-01-13 23:18:26 +01:00
adisbladis 5f232de6cd
qgroundcontrol: 2.9.4 -> 3.2.7, unbreak build 2018-01-13 04:03:38 +08:00
Luz e056315a3e librepcb-unstable: init at 2017-12-29 (#33630) 2018-01-11 09:20:00 +00:00
Austin Seipp 4d4340805b symbiyosys: 2017.12.06 -> 2018.01.10
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-10 14:00:58 -06:00
Symphorien Gibol bf49c616ee giac: fix build
giac was broken somewhere between 310ad4 and b33b4a, see
https://hydra.nixos.org/build/67137469
libgfortran.so.3 was not found
2018-01-10 18:42:38 +01:00
Samuel Dionne-Riel 7b97c8c0c8 treewide: homepage+src updates (found by repology, #33263) 2018-01-05 20:42:46 +01:00
Austin Seipp ebeb95d18b z3: 4.5.0-2017-11-06 -> 4.6.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-03 21:44:56 -06:00
Vladimír Čunát 1fcd92ce92
Merge branch 'master' into staging
A few thousand rebuilds from master, again.
Hydra: ?compare=1422362
2017-12-31 09:53:49 +01:00
Orivej Desh e87a82b010 cntk: mark as broken
It never succeeded to build.  @abbradar did not respond at
94dc37d622
2017-12-31 08:14:14 +00:00
John Ericson 4d2b763817
Merge pull request #26805 from obsidiansystems/cross-elegant
Make cross compilation elegant
2017-12-30 22:58:02 -05:00
John Ericson 046f091e0d treewide: Don't use envHook anymore
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
2017-12-30 22:04:22 -05:00
Austin Seipp ff555bdaeb tamarin-prover: enable tests
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:39:38 -06:00
Austin Seipp bae2e7ceb3 nixpkgs: add sapic as a dependency to tamarin-prover
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp 3813ab2589 nixpkgs: init sapic 0.9
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp a31bdc0739 nixpkgs: add 'graphviz' to tamarin-prover dependencies
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp abcfa6f608 nixpkgs: add tamarin-prover 1.3.0 (dev) tool
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 18:23:15 -06:00
David Asabina 810ec3f8bd bitscope: init at 2017-12-28 2017-12-30 21:58:27 +01:00
Frederik Rietdijk 2d0bead714 Merge remote-tracking branch 'upstream/master' into HEAD 2017-12-30 17:04:54 +01:00
Orivej Desh 77cc63950a wxmaxima: build with cmake
Fixes reported version number: see
https://github.com/NixOS/nixpkgs/pull/31657#issuecomment-354414642

"make check" did not run any tests with autotools, and is not defined with
cmake. ("make test" is not defined too.)
2017-12-29 21:00:03 +00:00
Vladimír Čunát f29000b002
Merge branch 'master' into staging
Hydra: ?compare=1421760
2017-12-29 10:13:33 +01:00
Robin Gloster ee1c85aee9 mariadb: lib -> connector-c 2017-12-29 02:18:35 +01:00
Nick Hu 8640e286b4 fdr: 4.2.0 -> 4.2.3 2017-12-29 02:01:31 +01:00
Vincent Laporte b320538f4c
coq: lablgtk is only needed for coqide 2017-12-23 11:11:56 +00:00
John Wiegley f962f33593 Specify the coq version in a more consistent location 2017-12-21 01:24:35 -08:00
Justin Bedo a49c91f655
snpeff: 4.3p -> 4.3t 2017-12-21 10:52:26 +11:00