Commit graph

1015 commits

Author SHA1 Message Date
Matthew Bauer 92f0f8dd68 Merge remote-tracking branch 'NixOS/master' into staging 2019-01-27 00:01:13 -05:00
Artemis Tosini 51a2a08d6e
mathematica: 11.2.0 -> 11.3.0
Note that this only affects the English version, as I do not have access
to the hash for the Japanese version.
2019-01-25 15:29:02 +00:00
worldofpeace 78da8d668b pantheon: init a 5.0 2019-01-24 20:54:14 +00:00
Timo Kaufmann d34f44db45
sage: fix transient ecl error (#54285)
Sometimes the doctests fail because ecl races to create a directory.
This should fix that by making sure each process has its own directory.
2019-01-18 23:02:03 +01:00
markuskowa 4545aaa671
Merge pull request #54209 from r-ryantm/auto-update/gmsh
gmsh: 4.0.7 -> 4.1.0
2019-01-18 11:40:48 +01:00
R. RyanTM 55ea7b1bbe gmsh: 4.0.7 -> 4.1.0
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2019-01-17 12:55:54 -08:00
Timo Kaufmann e379ee67c3 sage: 8.5 -> 8.6 2019-01-17 20:39:02 +01:00
Timo Kaufmann 29e150d85f
Merge pull request #54127 from timokau/gap-improvements
gap: install libgap, add packageSet option
2019-01-17 20:38:38 +01:00
Timo Kaufmann cf63a8c94c gap: add packageSet option
Two reasons for this:

- more fine-grained space/functionality tradeoff

- preparation for the sage 8.6 update, which finally doesn't need a
  downgraded gap anymore but does break when unexpected (non-standard)
  packages are installed. Details: https://trac.sagemath.org/ticket/26983

The proper way to deal with gap packages would be to create a package
set, package each one individually and have something like gap
equivalent of `python.withPackages`. I am not willing to do that
however.
2019-01-17 10:10:24 +01:00
Timo Kaufmann bb173ec8e3 gap: install libgap
There are some starts of a `make install`, but nothing complete yet.
Upstream now ships a `libgap` as a replacement of the custom one used by
sagemath.
2019-01-17 10:10:21 +01:00
Timo Kaufmann 6bbd0596dd gap: add timokau as maintainer
So that I'll be notified on changes which likely impact sage.
2019-01-16 23:41:31 +01:00
Timo Kaufmann a8dbc5e313
python.pkgs.cypari2: 1.3.1 -> 2.0.3 (#54093)
Upstream issues should be fixed now, see https://trac.sagemath.org/ticket/26442.
Sage needs a patch to adapt.
2019-01-16 22:15:40 +01:00
Johannes Frankenau bebf305c1b gurobi: 8.0.1 -> 8.1 (#53884) 2019-01-13 23:22:55 +01:00
R. RyanTM bd7eec5d9c pynac: 0.7.22 -> 0.7.23 (#53559)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pynac/versions
2019-01-07 14:52:18 +01:00
Timo Kaufmann 7abdacc4f2
Merge pull request #51039 from timokau/sage-8.5
sage: 8.4 -> 8.5
2018-12-29 16:15:38 +01:00
Timo Kaufmann 8cd7b5aab3
gap: 4r8p10 -> 4.10.0 (#53037)
This new version also has a libgap replacement, so after the next sage
update gap-libgap-compatible and libgap won't be necessary anymore.
2018-12-29 16:05:56 +01:00
Timo Kaufmann 22c16ed300 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-12-29 12:16:02 +01:00
Timo Kaufmann 95909d4fb6 Revert "sage: preload openblasCompat"
This reverts commit 4900bbee17.

The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
2018-12-28 23:06:05 +01:00
Timo Kaufmann 360eddd3a3 sage: remove outdated patch files 2018-12-28 23:06:05 +01:00
Timo Kaufmann 6f0f06ec89 sage: 8.5.rc1 -> 8.5 2018-12-28 23:06:05 +01:00
Alex Branham a5fc513079 R: 3.5.1 -> 3.5.2
Closes https://github.com/NixOS/nixpkgs/pull/52571.
2018-12-21 13:59:36 +01:00
Gabriel Ebner 21597583f9
Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk
qalculate-gtk: 2.8.1 -> 2.8.2
2018-12-17 09:46:32 +01:00
Timo Kaufmann b09967d812 sage: 8.5.rc0 -> 8.5.rc1 2018-12-16 21:33:28 +01:00
Jörg Thalheim 33c227c23b
Merge pull request #52392 from r-ryantm/auto-update/calc
calc: 2.12.7.1 -> 2.12.7.2
2018-12-16 17:33:43 +00:00
R. RyanTM 67536060ac calc: 2.12.7.1 -> 2.12.7.2
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-12-16 07:44:09 -08:00
Michael Raskin 2f0cbb34cf
Merge pull request #52171 from r-ryantm/auto-update/pari
pari: 2.11.0 -> 2.11.1
2018-12-15 12:08:50 +00:00
R. RyanTM 943e6fa283 pari: 2.11.0 -> 2.11.1
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pari/versions
2018-12-14 22:17:15 -08:00
R. RyanTM a7e1717d4b qalculate-gtk: 2.8.1 -> 2.8.2
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qalculate-gtk/versions
2018-12-14 07:37:22 -08:00
luz.paz ab9532b1fe gmsh: 4.0.5 -> 4.0.7 2018-12-14 08:01:20 -05:00
Timo Kaufmann 90bc5ce04d sage: 8.5.beta5 -> 8.5.beta6 2018-12-10 19:36:24 +01:00
Timo Kaufmann f0ea741a9a
Merge pull request #51786 from symphorien/giac-1.5
giac: 1.4.9 -> 1.5.0
2018-12-10 13:40:03 +01:00
Symphorien Gibol 29242e472e giac: build with nauty support 2018-12-09 23:18:58 +01:00
Symphorien Gibol 2253b3e760 nauty: also install libs 2018-12-09 23:18:53 +01:00
Symphorien Gibol 8b4f885264 giac: add missing optional dependencies 2018-12-09 23:18:53 +01:00
Symphorien Gibol e7801461e0 giac: don't split in multiple outputs for when gui enabled
This breaks the Phys and Turtle menu, among other things.
2018-12-09 23:18:53 +01:00
Symphorien Gibol b5435d0551 giac: 1.4.9 -> 1.5.0 2018-12-09 23:18:46 +01:00
Frederik Rietdijk a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Timo Kaufmann 5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414)
This reverts commit d9b650f4cc.

The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442.
2018-12-03 00:44:33 +01:00
markuskowa 506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https
Favor HTTPS URLs - the GNU edition
2018-12-02 16:52:33 +01:00
c0bw3b 0498ccd076 Treewide: use HTTPS on GNU domains
HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
2018-12-02 15:51:59 +01:00
c0bw3b 0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Jan Tojnar a51a99c690
gobject-introspection: rename package
camelCase package name was a huge inconsistency in GNOME package set.
2018-12-02 12:42:29 +01:00
Brenton Horne 10f40f3ac6 scilab-bin: adding application launchers
Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
2018-12-02 17:53:40 +10:00
Brenton Horne 7041972128 scilab-bin: adding bin/scilab symlink (#51346)
Should fix #51343, merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
2018-12-01 23:25:40 +01:00
Timo Kaufmann 88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix
sage: misc fixes
2018-12-01 22:04:48 +01:00
Timo Kaufmann 0e570199de sage: fix jmol integration 2018-12-01 21:31:29 +01:00
Timo Kaufmann cb73495f02 sagenb: fix matplotlib path 2018-12-01 20:41:40 +01:00
Timo Kaufmann d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446) 2018-12-01 12:57:55 +01:00
Matthew Bauer 76c7a8bac0
Merge pull request #51205 from matthewbauer/more-setup-hooks
Add premake & imake setup hook
2018-11-29 19:36:25 -06:00
Matthew Bauer c0a804c747 treewide: add dontUseImakeConfigure where needed
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:

- Xaw3d
- R
- tkgate
- ssvnc
2018-11-28 20:14:45 -06:00
Timo Kaufmann d6376bca6d sage: don't test the downgraded R
Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249. The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
2018-11-28 22:52:15 +01:00
Timo Kaufmann 359bf7f1e3 sage: disable test timeout
Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
2018-11-28 22:37:24 +01:00
Timo Kaufmann 4900bbee17 sage: preload openblasCompat 2018-11-28 20:44:09 +01:00
Timo Kaufmann 7ca2915a50 sage: 8.5.beta4 -> 8.5.beta5 2018-11-27 18:26:16 +01:00
Timo Kaufmann 2dd9a0ed72 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-11-27 18:25:39 +01:00
Timo Kaufmann 90cebaf828 sage: 8.5.beta3 -> 8.5.beta4 2018-11-25 19:39:18 +01:00
Timo Kaufmann 2a87caa892 sage: 8.5.beta2 -> 8.5.beta3 2018-11-25 19:39:17 +01:00
Timo Kaufmann 3370247f7f sage: 8.5.beta1 -> 8.5.beta2 2018-11-25 19:39:17 +01:00
Timo Kaufmann 883aa99226 sage: add short tests 2018-11-25 19:39:13 +01:00
Timo Kaufmann 8e7da1b8a4 sage: 8.5.beta0 -> 8.5.beta1 2018-11-25 19:36:21 +01:00
Timo Kaufmann 6138f5d5eb sage: 8.4 -> 8.5.beta0 2018-11-25 19:36:21 +01:00
Timo Kaufmann 2fbde72556
sage: add tkinter as matplotlib backend (#51032)
Fixes #50959.
2018-11-25 17:38:45 +01:00
Timo Kaufmann 98c94d3d7d sage: add jupyter notebook support
Fixes #48544.
2018-11-25 15:54:31 +01:00
Timo Kaufmann 0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor
Sage refactor
2018-11-24 23:59:28 +01:00
Timo Kaufmann a0723f1285 sage: don't fix node version 2018-11-24 23:14:38 +01:00
Timo Kaufmann e28a8ed287 sage: add some flexibility to the test runner
Make it possible to run individual tests. This is very useful while
git-bisecting.
2018-11-24 23:14:38 +01:00
Timo Kaufmann 21f9123ea6 sage: remove openblas hack
The pc files have since been included into the openblas package.
2018-11-24 23:14:38 +01:00
Timo Kaufmann 3832ddedb9 sage: refactor 2018-11-24 23:14:33 +01:00
c0bw3b 0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Timo Kaufmann 9b4a518465 sage: drop known-padics-failure patch
The failure was not observed for a while and is probably fixed now.
2018-11-24 19:01:57 +01:00
Timo Kaufmann ca6475b5e8 sage: drop unused patches 2018-11-24 19:01:57 +01:00
Michael Raskin 6fe39605df polymake: init at 3.2r4 2018-11-22 12:29:14 +03:00
Frederik Rietdijk fd26e7be2a Merge master into staging-next 2018-11-20 11:47:26 +01:00
luzpaz 0ec2af3736
gmsh: 4.0.4 -> 4.0.5
Manually updated
2018-11-19 11:12:38 -05:00
Frederik Rietdijk 63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Jörg Thalheim 131f2e93b6
sage: unpin nodePackage version 2018-11-16 21:24:25 +00:00
Renaud 650036f022
Merge pull request #50359 from jfrankenau/gurobi-java
gurobi: install Java library files
2018-11-15 14:13:47 +01:00
Johannes Frankenau b4e13e6257 gurobi: install Java library files 2018-11-14 19:38:18 +01:00
Renaud 7ca9d67948
Merge pull request #50102 from r-ryantm/auto-update/gp2c
gp2c: 0.0.11 -> 0.0.11pl1
2018-11-14 16:07:49 +01:00
markuskowa f597a88542
Merge pull request #50101 from r-ryantm/auto-update/gmsh
gmsh: 4.0.2 -> 4.0.4
2018-11-14 12:46:48 +01:00
Markus Kowalewski 644ab709e7
gmsh: restrict platform to x86_64-linux 2018-11-14 12:33:37 +01:00
Markus Kowalewski ced40eabfd
gmsh: use openblas instead of atlas/lapack
* openblas is properly recognized by cmake
* the cmake patch is no longer neccessary
2018-11-14 11:41:46 +01:00
Matthew Bauer 2e18ba6c5a
Merge pull request #49776 from matthewbauer/atlas-remove
atlas: remove
2018-11-13 19:18:35 -06:00
Frederik Rietdijk daf3297cb4 Merge master into staging-next 2018-11-12 18:59:08 +01:00
Peter Simons 22a802584f
Merge pull request #50179 from Thra11/r-without-jdk
R: Remove jdk dependency on aarch32/64
2018-11-12 12:42:39 +01:00
Frederik Rietdijk 7863aae5b2 Merge master into staging-next 2018-11-11 08:59:44 +01:00
markuskowa 45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski 6533d7588d
colpack: set platform to linux 2018-11-11 02:17:49 +01:00
Tom Hall b51018ed2e R: Remove jdk dependency on aarch32/64
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
2018-11-10 20:53:26 +00:00
R. RyanTM 2fd0c31673 calc: 2.12.6.8 -> 2.12.7.1 (#50173)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-11-10 15:32:06 +01:00
Gabriel Ebner 698ad2dd4d nasc: 0.5.0 -> 0.5.1 2018-11-10 14:18:31 +01:00
Gabriel Ebner 5f2a7607fa qalculate-gtk: 2.6.2 -> 2.8.1 2018-11-10 13:17:17 +01:00
Frederik Rietdijk 53d00c3351 Merge master into staging-next 2018-11-10 11:08:54 +01:00
R. RyanTM f5b4eb63f3 gp2c: 0.0.11 -> 0.0.11pl1
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
2018-11-09 17:56:17 -08:00
R. RyanTM 6f2bb3c275 gmsh: 4.0.2 -> 4.0.4
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-11-09 17:41:49 -08:00
Timo Kaufmann efe6322ce4 pythonPackages.networkx: 2.1 -> 2.2 2018-11-07 20:15:37 +01:00
Timo Kaufmann 72e6e792f6 sage: add fetchSageDiff utility function 2018-11-07 20:15:37 +01:00
Matthew Bauer 95373d3634 atlas: remove
atlas is broken and can apparently be removed.

Fixes #49594
2018-11-04 20:23:12 -06:00
Matthew Bauer 7f4b26681d
Merge pull request #49417 from matthewbauer/disallow-native-build-inputs
Disallow references to nativeBuildInputs
2018-11-02 20:26:48 -05:00
Jan Tojnar 3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update
update some elementary thirdparty apps
2018-11-02 21:29:57 +01:00
worldofpeace 0a2420bccd nasc: 0.4.7 -> 0.5.0 2018-11-02 16:01:05 -04:00
Tuomas Tynkkynen 067d1cf330 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/applications/science/math/sage/sage-src.nix
2018-10-27 19:58:03 +03:00
Timo Kaufmann 2513747356 sage: fix attrname
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
2018-10-27 14:18:08 +02:00
Timo Kaufmann fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Timo Kaufmann 2ce2fcfc30 pythonPackages.cython: 0.28.5 -> 0.29
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
2018-10-24 20:05:44 +02:00
Timo Kaufmann db75fe7313 sage: fix doctest
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
2018-10-22 14:52:19 +02:00
Timo Kaufmann b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann 38c2be5ffe sage: fix docbuild
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
2018-10-21 14:16:06 +02:00
Timo Kaufmann a413dedde1
Merge pull request #44527 from timokau/sage-8.4
[WIP] sage: 8.3 -> 8.4
2018-10-20 01:34:34 +02:00
Timo Kaufmann 7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
R. RyanTM eeb2ee296c gmsh: 4.0.1 -> 4.0.2
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
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2018-10-15 21:54:45 -07:00
Timo Kaufmann f89df0b556 sage: 8.4.rc0 -> 8.4.rc1 2018-10-13 13:27:10 +02:00
Timo Kaufmann 27919e06f1 sage: 8.4.beta7 -> 8.4.rc0 2018-10-07 12:23:10 +02:00
Jörg Thalheim 5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc
calc: 2.12.6.6 -> 2.12.6.8
2018-10-04 23:31:38 +01:00
R. RyanTM 904fd99bb4 calc: 2.12.6.6 -> 2.12.6.8
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
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2018-10-03 16:01:08 -07:00
R. RyanTM 98092f7a67 nauty: 26r10 -> 26r11
Semi-automatic update generated by
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based on information from
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2018-10-03 05:54:07 -07:00
Timo Kaufmann a13eb29485 sage: 8.4.beta6 -> 8.4.beta7 2018-10-01 17:38:20 +02:00
Timo Kaufmann bcc066b569 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-10-01 14:20:33 +02:00
R. RyanTM b65fbe8fcd gmsh: 4.0.0 -> 4.0.1 (#47060)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
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2018-09-28 22:17:32 +02:00
Timo Kaufmann 0be6ca9e71 sage: 8.4.beta5 -> 8.4.beta6 2018-09-27 12:08:15 +02:00
Timo Kaufmann 1217882907 sage: 8.4.beta4 -> 8.4.beta5 2018-09-15 17:23:14 +02:00
Timo Kaufmann c3f652d5a8 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-15 17:22:11 +02:00
Silvan Mosberger 10a412f251
almonds: update license 2018-09-09 02:04:34 +02:00
Markus Kowalewski 1cff2dd135
pynac: add license 2018-09-08 14:48:19 +02:00
Timo Kaufmann db784d883c sage: re-add pkg-config aliases
Those were removed because they were added to openblas itself. There was
an error with that however and it will take some time until the fix
makes its way through staging. For the time being, reverting this part
of 26d5d030fe will fix the sage build.
This commit should be reverted once
408eacbc89 is in master.
2018-09-07 21:55:41 +02:00
Timo Kaufmann 770c5b8a69 sage: 8.4.beta3 -> 8.4.beta4 2018-09-07 20:56:37 +02:00
Timo Kaufmann 4ab832d6e7 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-07 20:54:09 +02:00
Timo Kaufmann 7521f2863d sage: fix numpy and scipy integration 2018-09-07 18:36:52 +02:00
Profpatsch 3e45b61a99 lib/trivial: add a few examples of usage of assertMsg/assertOneOf 2018-09-06 18:14:27 +02:00
Daniël de Kok 590ce7d1ae mxnet: fix library dependencies.
- mxnet now builds the open source MKL DNN library. However, this
  was not included with the build.
- mxnet builds its own OpenMP library, even when OpenMP is provided
  by the system. This leads to problems, so remove the included
  OpenMP implementation:

  https://github.com/apache/incubator-mxnet/pull/12160
2018-09-04 20:27:25 +02:00
Daniël de Kok 93a5947158 mxnet: 1.1.0 -> 1.2.1 (#46026)
Update and fix the build:

- Perl is a build-time requirement.
- Fix hardcoded /bin/bash invocation.
2018-09-04 11:37:54 +02:00
Timo Kaufmann 46e653673e sage: 8.4.beta2 -> 8.4.beta3 2018-09-02 12:42:44 +02:00
xeji a3434cf4e5
Merge pull request #45921 from markuskowa/homepages
Cleanup homepage links
2018-09-02 08:39:30 +02:00
Markus Kowalewski 5cf25dded7
symmetrica: update homepage 2018-09-02 01:46:25 +02:00
Markus Kowalewski c184150a22
jags: update homepage + fix license 2018-09-02 01:46:18 +02:00
Robert Schütz 93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson 2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system
It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
Frederik Rietdijk 6038628ea5 Merge master into staging-next 2018-08-29 20:54:55 +02:00
R. RyanTM e301589013 gmsh: 3.0.6 -> 4.0.0 (#45592)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions.
2018-08-27 16:06:28 +02:00
Frederik Rietdijk 7945295410 Merge master into staging 2018-08-27 08:21:50 +02:00
Timo Kaufmann c614c15f93
Merge pull request #45257 from timokau/openblas-pc
openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
Timo Kaufmann 0e4160a3a1 pythonPackages.sympy: 1.1.1 -> 1.2 2018-08-26 19:56:44 +02:00
Timo Kaufmann 1b42a1ba1e sage: 8.4.beta1 -> 8.4.beta2 2018-08-26 13:09:22 +02:00
Timo Kaufmann 26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Markus Kowalewski a1129ef9cb
glsurf: add license 2018-08-20 21:15:16 +02:00
Markus Kowalewski 3c1819fcce
ginac: add license 2018-08-20 21:02:45 +02:00
Vladimír Čunát cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
zimbatm b7e50d52f0
caffe: add darwin support (#44616) 2018-08-16 12:46:51 +01:00
Gabriel Ebner f207998d79 qalculate-gtk: 2.6.1 -> 2.6.2 2018-08-16 11:56:27 +02:00
Bernard Fortz 22c15abe20 cplex: init at 12.8 (#44029)
* cplex: init at 12.8

* Removed bundled java from bin directory

* Refactored

* More refactoring

* Added config option for releasePath

* Minor cleanup
2018-08-15 19:46:09 -05:00
Timo Kaufmann 52b9217b50 sage: 8.4.beta0 -> 8.4.beta1 2018-08-16 00:17:14 +02:00
Timo Kaufmann df97127114 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-08-15 13:51:07 +02:00
adisbladis 2937e7367f
Merge pull request #45009 from jbaum98/ratpoints-darwin
ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
2018-08-15 15:28:39 +08:00
Jörg Thalheim 0ee6d7e3ab
Merge pull request #45011 from jbaum98/symmetrica-darwin
symmetrica: Add darwin support
2018-08-15 07:54:56 +02:00
Jake Waksbaum 47aa6abe96 ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support 2018-08-14 11:27:59 -04:00
Jake Waksbaum 8ae47fa81a symmetrica: Add darwin support 2018-08-14 11:23:21 -04:00
Jake Waksbaum be81e1e29c gfan: Add darwin support 2018-08-14 00:16:46 -04:00
Vladimír Čunát 00df25ee57
Merge branch 'master' into staging-next
Hydra: ?compare=1472947
2018-08-12 10:33:41 +02:00
Jake Waksbaum 3babbaaa47 palp: Add darwin support (#44829) 2018-08-09 22:28:27 +02:00
Frederik Rietdijk d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann 291018b34e arb: 2.13.0 -> 2.14.0 (#44600) 2018-08-07 16:38:34 +02:00
symphorien 0ca40a51c7 gwyddion, ripser: fix derivation name (#44577) 2018-08-07 01:21:53 +02:00
Timo Kaufmann a8b048c686 sage: 8.3 -> 8.4.beta0 2018-08-05 21:09:56 +02:00
Michael Raskin 75cb04672f
Merge pull request #44508 from timokau/cddlib-0.94j
cddlib: 0.94i -> 0.94j
2018-08-05 19:03:47 +00:00
Timo Kaufmann 0a44ff7676 cddlib: 0.94i -> 0.94j
cddlib was autotoolized, incorporated equivalents to the sage patches
and moved to GitHub.
2018-08-05 19:02:45 +02:00
Michael Raskin 6b0234942b
Merge pull request #44501 from timokau/sage-native-pari
sage: don't override pari
2018-08-05 15:14:00 +00:00
Timo Kaufmann 30c822189d sage: don't override pari
Sage assumes that pari does not use threads. However instead of
disabling them at compile time, we can diable them at runtime instead.
As a result, sage doesn't need its own version of pari anymore. That
means less rebuilds, less complexity and easier debugging.
2018-08-05 13:48:14 +02:00
Michael Raskin 58384b1dd0 scilab-bin: 5.5.2 -> 6.0.1 2018-08-05 11:27:35 +03:00
Michael Raskin b79dbfe482
Merge pull request #43281 from timokau/sage-8.3
sage: 8.2 -> 8.3
2018-08-04 13:02:06 +00:00
Timo Kaufmann 834a24e0ff sage: don't pin ntl
Now possible because of the lcalc c++11 patch.
2018-08-04 14:22:58 +02:00
Timo Kaufmann e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
Timo Kaufmann fa34f6d41c sage: don't pin pari 2018-08-04 14:22:28 +02:00
Timo Kaufmann e82c26af9b sage: don't pin singular 2018-08-04 14:22:28 +02:00
Timo Kaufmann 289173366b singular: backport ntl error handling patch 2018-08-04 14:22:27 +02:00
Timo Kaufmann 840b64fdb8 sage: 8.2 -> 8.3 2018-08-04 14:22:21 +02:00
Tuomas Tynkkynen 008fd5fcf5 Merge remote-tracking branch 'upstream/master' into staging 2018-08-04 15:17:42 +03:00
John Ericson db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
John Ericson 632d24f11f scilab: Make configureFlags a list 2018-08-03 17:05:58 -04:00
Robert Schütz ae3bbf2958 almonds: use python3 2018-08-03 18:04:46 +02:00
Johannes Frankenau 79cd841713 bcal: 1.8 -> 1.9 2018-08-03 09:08:26 +02:00
R. RyanTM 38c8be3726 gp2c: 0.0.10pl1 -> 0.0.11 (#43941)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions.
2018-07-31 00:30:21 +02:00
Timo Kaufmann ae821e09e7 glpk: adopt error recovery patch (#44201)
This makes it possible to use "vanilla" glpk for sage and shouldn't
affect anything else.
2018-07-29 20:53:56 +02:00
Frederik Rietdijk 1fe2a0f81e
Merge pull request #44129 from timokau/pari-2.11.0
pari: 2.9.5 -> 2.11.0
2018-07-27 11:57:57 +02:00
Timo Kaufmann 330c501be0 pari: 2.9.5 -> 2.11.0
The pari update makes it necessary to disable a giac test that only
fails because it directly tests the pari interface.
2018-07-26 18:42:17 +02:00
Timo Kaufmann 024c23503c singular: 4.1.1p1 -> 4.1.1p2 2018-07-23 12:17:25 +02:00
Jörg Thalheim 218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk 1a6af9f88e
Merge pull request #43857 from volth/unused
[bot] treewide: remove unreferenced code
2018-07-20 21:06:32 +02:00
volth 87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Matthew Bauer fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix
fetchpatch: quote excludes
2018-07-19 00:35:09 -04:00
Michael Raskin 877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1
ntl: 9.11.0 -> 11.2.1
2018-07-18 15:08:43 +00:00
Jan Tojnar a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann cad446513e ntl: 9.11.0 -> 11.2.1
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
2018-07-18 14:58:38 +02:00
Timo Kaufmann 3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
fragamus 794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann c77d1e5b31 eclib: 20171219 -> 20180710
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
2018-07-15 14:59:28 +02:00
Johannes Frankenau d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Timo Kaufmann 85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Timo Kaufmann 35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
R. RyanTM ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
2018-07-11 00:45:08 -07:00
R. RyanTM 99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
2018-07-09 16:02:58 +02:00
Gabriel Ebner 887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Silvan Mosberger fac943fc81
Merge pull request #42897 from fragamus/master
add bliss package
2018-07-04 13:59:41 +02:00
Michael Gough e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sarah Brofeldt f06ce58323
Merge pull request #42843 from fragamus/master
hmetis: init at 1.5
2018-07-02 11:40:41 +02:00
Peter Simons cbc1a03ab8 R: update to version 3.5.1
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
2018-07-02 11:33:50 +02:00
Michael Gough f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Timo Kaufmann 70ba695777 sage: replace JUPYTER_PATH patch by upstream patch
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
2018-06-30 22:30:30 +02:00
Timo Kaufmann 398dad270a sage, arb: update sage dependencies arb and pynac
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
2018-06-30 17:05:56 +02:00
Timo Kaufmann 17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann 424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
Timo Kaufmann 9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann 2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann 08a59bb10d palp: fix runtime error introduced by #28029 (#42633)
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
2018-06-27 09:42:26 +02:00
Maximilian Bosch 0dbfa47ed1 geogebra: 5-0-444-0 -> 5-0-472-0 (#41990)
Bumped to the latest version available.

Also tested the `web.archive.org` backup to avoid broken downloads when
the tarball is removed from the official download mirror.
2018-06-17 18:04:14 +02:00
R. RyanTM d50e65b346 pynac: 0.7.19 -> 0.7.21 (#41662)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pynac/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.7.21 with grep in /nix/store/883yhmfc1k4vz1dd37l73v7clvnyaa3v-pynac-0.7.21
- directory tree listing: https://gist.github.com/a0f53cebb1c4cae07c81edef938ac632
- du listing: https://gist.github.com/78800724710d0766e4add7ed1847c3fc
2018-06-08 19:02:38 +02:00
Ryan Mulligan af9d10a91b treewide: fix derivation names 2018-05-28 05:59:57 -07:00
Gabriel Ebner d96cc05a60 qalculate-gtk: 2.3.0 -> 2.5.0 2018-05-24 18:19:55 +02:00
Sarah Brofeldt 6ea941d3fd gmsh: gfortran -> nativeBuildInputs (fix #40976) (#40984) 2018-05-23 17:32:43 +02:00
Dmitry Kalinkin 65c3273250 form: init at 4.2.0 (#40693) 2018-05-22 20:17:32 +02:00
R. RyanTM b34f0a11dc pari: 2.9.4 -> 2.9.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pari/versions.

These checks were done:

- built on NixOS
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/tex2mail passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gphelp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp-2.9 passed the binary check.
- 4 of 4 passed binary check by having a zero exit code.
- 0 of 4 passed binary check by having the new version present in output.
- found 2.9.5 with grep in /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5
- directory tree listing: https://gist.github.com/63c5da24ace1d863b434a462fc0d0123
- du listing: https://gist.github.com/d275cd2f3b274f52576dbab1bf9ebc9c
2018-05-21 08:53:00 +00:00
Pascal Wittmann 97ab2d40cb
Merge pull request #40614 from symphorien/ries
ries: init at 2018-04-11
2018-05-17 21:30:47 +02:00
Symphorien Gibol ea7404dcd7 ries: init at 2018-04-11 2018-05-17 14:09:33 +02:00
R. RyanTM de49ba6c3f nauty: 26r7 -> 26r10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/nauty/versions.

These checks were done:

- built on NixOS
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dreadnaut passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/copyg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/listg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/labelg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/amtog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/geng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/complg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/showg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/NRswitchg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/biplabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/addedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/deledgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/countg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/pickg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genrang passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/newedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/catg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/directg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentreeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genquarticg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/ranlabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/multig passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/planarg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentourng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/linegraphg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/watercluster2 had a zero exit code or showed the expected version
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretodot passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/subdivideg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/vcolg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/delptg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/cubhamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/twohamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/hamheuristic passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/converseg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genspecialg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbgL passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/shortg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/configure had a zero exit code or showed the expected version
- 38 of 40 passed binary check by having a zero exit code.
- 0 of 40 passed binary check by having the new version present in output.
- directory tree listing: https://gist.github.com/3bca602211d416ba58097f4f8880b6d0
- du listing: https://gist.github.com/4ac19efe14e18aae8fece0ec1a500bf1
2018-05-17 03:57:50 -07:00
Matthew Bauer e0d6edddd7 pspp: provide default icons & settings
psppire needs to be wrapped so that it will work outside of GNOME
desktop. We provide hicolor-icon-theme & gsettings-desktop-schemas.

Note that at runtime, I still get this error:

- Cannot create a converter for `IBM864' to `UTF-8': Invalid argument

Possibly a locale issue.

Fixes #40558
2018-05-15 15:42:13 -05:00
Timo Kaufmann 053d1e0339 giac: re-add lapack without atlas (#40 (#40458)
giac: re-add lapack without atlas
2018-05-14 12:47:45 +02:00
Timo Kaufmann 5550015b20 giac: remove liblapackWithAtlas dependency (#40430) 2018-05-13 18:33:51 +02:00
John Ericson ae429f8e55 yacas: 1.2.2 -> 1.6.1
They switched to cmake and talk about mingw cross, so I can kill
crossAttrs too.
2018-05-10 11:42:08 -04:00
Lengyel Balazs 1f1e16af73 mathematica: add mesa, fix libGL.so.1 not found messages 2018-05-04 13:10:26 +02:00
Matthew Bauer 57a4db2449 pspp: supports darwin 2018-05-01 00:45:05 -05:00
Michael Raskin 1f909a8dfc
Merge pull request #39403 from timokau/maxima-exl-testfailures-2
maxima-ecl: Disable more failing tests
2018-04-24 15:44:04 +00:00
Matthew Justin Bauer d57e6466e0
Merge pull request #39377 from timokau/pari-pthread
pari: Make pthread optional, remove unstable
2018-04-24 10:03:01 -05:00
Timo Kaufmann 396b5d9c65 maxima-ecl: Disable more failing tests 2018-04-24 13:38:44 +02:00
Timo Kaufmann 75b0866d0c pari: Make pthread optional, remove unstable 2018-04-24 12:54:59 +02:00
Michael Raskin bc6f7a9ccf
Merge pull request #39370 from timokau/singular-ntl
singular: Fix ntl dependency
2018-04-24 10:54:23 +00:00
Timo Kaufmann ba389086de singular: Fix ntl dependency 2018-04-24 12:04:28 +02:00
Timo Kaufmann b707c91814 maxima-ecl: Disable failing tests 2018-04-24 11:16:55 +02:00
Peter Simons 6799fcb42b R: 3.4.4 -> 3.5.0
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
2018-04-24 09:19:13 +02:00
Matthew Justin Bauer a02d6c99af
Merge pull request #34014 from mnacamura/mathematica-l10n
mathematica: enable installation of localized editions
2018-04-23 11:58:34 -05:00
Jörg Thalheim c7d278ad07
Merge pull request #39351 from matthewbauer/calc-on-darwin
calc: cleanup expression
2018-04-23 08:07:13 +01:00
Matthew Bauer 63507ada7d calc: cleanup expression
Fixes #39321

(Still needs testing on Linux)
2018-04-22 19:01:25 -05:00
Timo Kaufmann be0b8f2cf6 palp: init at 2.1 2018-04-21 20:40:59 -05:00
Timo Kaufmann 7dc6b2e3c3 pynac: init at 0.7.19 2018-04-21 20:40:22 -05:00
Matthew Justin Bauer 1bb28f26e8
Merge pull request #38810 from timokau/giac-improvements
giac: enable checks, separate outputs
2018-04-19 12:03:53 -05:00
Timo Kaufmann ddb7c0e930 lrcalc: init at 1.2 (#38755) 2018-04-19 08:42:06 +02:00
Michael Raskin 783204bdbc
Merge pull request #38768 from timokau/singular-4.1.1
singular: 3.1.7 -> 4.1.1
2018-04-12 11:40:06 +00:00
Timo Kaufmann eb119b045a maxima: add various fixes, re-add ecl support 2018-04-12 00:46:40 +02:00
Timo Kaufmann 32cf225ad9 giac: enable checks, separate outputs 2018-04-11 22:56:21 +02:00
Guillaume Maudoux b7dbff3aac gap-minimal: fix ofBorg evaluation 2018-04-11 17:08:54 +02:00
Timo Kaufmann fa3d0cef67 singular: 3.1.7 -> 4.1.1 2018-04-11 17:00:20 +02:00
Timo Kaufmann 6dc287802a gap: 4r8p3 -> 4r8p10 2018-04-11 15:22:03 +02:00
Jörg Thalheim fb3b3d6394 weka: use makeWrapper 2018-04-05 19:21:16 +01:00
R. RyanTM 05bffb5a0d weka: 3.8.2 -> 3.9.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/weka/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.9.2 with grep in /nix/store/rv6aq5p1qacvpvaw9vszawzidsh8xdl9-weka-3.9.2
- directory tree listing: https://gist.github.com/c1ee16794a22549147d4d292cad986e5
2018-04-05 09:08:28 -07:00
Gabriel Ebner 5a7e6732c5 qalculate-gtk: 2.2.1 -> 2.3.0 2018-03-31 17:42:47 +02:00
Symphorien Gibol 262fff26ed giac: fix url
the previous url was a moving target and was updated at each point
release. Use a frozen source instead.
2018-03-30 21:32:56 +02:00
Maximilian Bosch 2379cfc4ed
geogebra: add archive.org link for 5-0-444-0
The `geogebra` package is subject to break as upstream removes versioned
packages from their download server when five new releases are comming.

This is why I had to fix almost monthly the package by bumping the
version (these can be found by running `git log --online | grep
geogebra:`). As the package didn't cause any issues for several months
now I guess that using `archive.org` seems to be a suitable solution for
now.

/cc @sternenseemann @matthewbauer
2018-03-25 10:08:43 +02:00
sternenseemann 275cd49731 geogebra: 5-0-382-0 -> 5-0-444-0 2018-03-25 01:51:04 -05:00
Matthew Justin Bauer 64a1fd6c69
Merge pull request #37224 from matthewbauer/auto-update/jags
jags: 4.1.0 -> 4.3.0
2018-03-21 23:42:39 -05:00
Matthew Justin Bauer 04e6a14df4
Merge pull request #36744 from samdroid-apps/add-nasc
nasc: init at 0.4.6
2018-03-19 03:41:24 -05:00
Gabriel Ebner faf094adef
Merge pull request #36435 from timokau/origin/ecm-update
ecm: 6.4.4 -> 7.0.4
2018-03-18 13:08:34 +01:00
Gabriel Ebner 7072d11391
Merge pull request #37194 from ryantm/auto-update/gp2c
gp2c: 0.0.10 -> 0.0.10pl1
2018-03-18 12:04:08 +01:00
Gabriel Ebner 5693c5da8e
Merge pull request #36986 from ryantm/auto-update/fricas
fricas: 1.3.2 -> 1.3.3
2018-03-17 13:56:26 +01:00
Matthew Bauer e2d12274c2 jags: 4.1.0 -> 4.3.0
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:
- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.3.0 with grep in /nix/store/aw897502z5bcn6dw6rp7jca90flfrjab-JAGS-4.3.0
2018-03-17 02:02:11 -05:00
Ryan Mulligan 3e2f544c39 gp2c: 0.0.10 -> 0.0.10pl1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -v` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` and found version 0.0.10pl1
- found 0.0.10pl1 with grep in /nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1
- directory tree listing: https://gist.github.com/27f1364bf90110b801070fcb28c64e0e
2018-03-16 12:51:03 -07:00
Peter Simons d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Joachim F d703988c2b
Merge pull request #36483 from ryantm/auto-update/calc
calc: 2.12.6.3 -> 2.12.6.6
2018-03-14 19:37:27 +00:00
Ryan Mulligan bf06f445dd fricas: 1.3.2 -> 1.3.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` got 0 exit code
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` and found version 1.3.3
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/efricas --help` got 0 exit code
- found 1.3.3 with grep in /nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3
2018-03-14 08:04:41 -07:00
volth 7ec0471242 treewide: s/xlibs/xorg/g (#36889) 2018-03-13 10:16:03 +00:00
Johannes Frankenau 59cc47d802 bcal: 1.7 -> 1.8
The tests failed for a good reason on Darwin and should not have been
disabled. The issue has been resolved upstream with version 1.8 which
now also supports AArch64.
2018-03-12 18:36:26 +01:00
Michael Raskin 2093d4781d sage: set platforms to the set where I can build it; Hydra ARM builds seem to fail 2018-03-10 13:50:11 +01:00
Sam Parkinson 28a67ec16a
nasc: init at 0.4.6 2018-03-10 22:21:36 +11:00
Graham Christensen 05db7ca765
Merge pull request #36553 from ryantm/auto-update/gmsh
gmsh: 3.0.5 -> 3.0.6
2018-03-09 17:25:29 -05:00
Graham Christensen d2429e0045
Merge pull request #36537 from ryantm/auto-update/ginac
ginac: 1.7.2 -> 1.7.4
2018-03-09 17:20:53 -05:00
Daiderd Jordan 43be4ebfb1
Merge pull request #36581 from matthewbauer/darwin-fixes
darwin: fixes
2018-03-09 19:32:54 +01:00
Matthew Bauer 54e2c28b09 darwin: disable broken packages 2018-03-08 17:21:17 -06:00
Ryan Mulligan 365a2e5acc gmsh: 3.0.5 -> 3.0.6
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.0.6 with grep in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
- found 3.0.6 in filename of file in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
2018-03-08 11:29:17 -08:00
Ryan Mulligan e729cebdc9 ginac: 1.7.2 -> 1.7.4
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar -h` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar --help` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar help` got 0 exit code
- found 1.7.4 with grep in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
- found 1.7.4 in filename of file in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
2018-03-08 08:40:52 -08:00
Ryan Mulligan 89fca29099 gfan: 0.6 -> 0.6.2
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2/bin/gfan --help` got 0 exit code
- found 0.6.2 with grep in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
- found 0.6.2 in filename of file in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
2018-03-08 07:52:17 -08:00
Ryan Mulligan 6edbf98d34 calc: 2.12.6.3 -> 2.12.6.6
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -V` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -v` and found version 2.12.6.6
- found 2.12.6.6 with grep in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
- found 2.12.6.6 in filename of file in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
2018-03-07 20:08:56 -08:00
Timo Kaufmann 77d1fdb2c1 ecm: 6.4.4 -> 7.0.4 2018-03-07 18:28:26 +01:00
Vladimír Čunát 565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Timo Kaufmann 4f239f9d49 sage: Make build more platform independant 2018-03-04 01:36:31 +01:00
Ryan Mulligan 2fe9ca05e4 pari: 2.9.3 -> 2.9.4
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/tex2mail help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -V` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -v` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --version` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` and found version 2.9.4
- found 2.9.4 with grep in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4
- found 2.9.4 in filename of file in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4

cc "@ertes @raskin @AndersonTorres"
2018-02-28 14:27:07 +00:00
Ryan Mulligan 84091451ec wxmaxima: 17.10.1 -> 18.02.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 18.02.0 with grep in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0
- found 18.02.0 in filename of file in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0

cc "@peti"
2018-02-27 19:05:41 -08:00
Frederik Rietdijk b45845f228
Merge pull request #35713 from ryantm/auto-update/fricas-1.3.1-to-1.3.2
fricas: 1.3.1 -> 1.3.2
2018-02-27 08:12:42 +00:00
Ryan Mulligan be7cd20d3c lp_solve: 5.5.2.0 -> 5.5.2.5
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` got 0 exit code
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` and found version 5.5.2.5
- found 5.5.2.5 with grep in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5
- found 5.5.2.5 in filename of file in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5

cc "@smironov"
2018-02-26 21:57:53 -08:00
Ryan Mulligan 4440d28fbd fricas: 1.3.1 -> 1.3.2
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` got 0 exit code
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` and found version 1.3.2
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/efricas --help` got 0 exit code
- found 1.3.2 with grep in /nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2

cc "@sprock"
2018-02-26 06:28:48 -08:00
adisbladis 780e1a34e1
Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9
cbc: 2.9.5 -> 2.9.9
2018-02-26 09:33:53 +08:00
Ryan Mulligan 79795b44f9 cbc: 2.9.5 -> 2.9.9
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9
- found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
- found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
2018-02-25 14:03:37 -08:00
Nikolay Amiantov 7f1b8d744f cntk: fix build without CUDA 2018-02-25 22:50:20 +03:00
Nikolay Amiantov 3179002f61 mxnet: 0.11.0 -> 1.1.0 2018-02-25 22:24:09 +03:00
Nikolay Amiantov 6f96122d5b caffe: add nccl support 2018-02-25 22:24:09 +03:00
Nikolay Amiantov 25079ad238 caffe: depend on opencv3
openblas is used since it's propagated from OpenCV and ATLAS compiled without
architecture-specific optimizations is generally slower than OpenBLAS as I
heard.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov 1bfca90bf7 cntk: 2.2 -> 2.4
Comment for `broken` indicates that it never worked at all, which is strange
since on my machine it did. Anyway it works now for me.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov 08f8ad26b3 treewide: unquote homepage in my packages
I don't like this personally but we have #27809 as a precedent.
2018-02-25 22:24:08 +03:00
Alexander V. Nikolaev 0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Alexander V. Nikolaev 1bc1909e5b treewide: transition from mesa_glu to libGLU 2018-02-24 17:05:43 +02:00
Gabriel Ebner f5b173ffbc qalculate-gtk: 2.1.0 -> 2.2.1 2018-02-24 11:54:53 +01:00
Timo Kaufmann 89162cdd29 sage: explicitly use gfortran6
The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke
the build.
2018-02-23 17:00:21 +01:00
Johannes Frankenau 74029a21bf bcal: init at 1.7 2018-02-21 00:05:16 +01:00
Timo Kaufmann 0713bde50f sage: Don't build docs by default
This makes the HTML-docs an default-off option. Inline documentation
(`matrix-plot??`) is still available and HTML docs are available online.

Motivation: Get below the Hydra output size limit.
2018-02-13 17:52:41 +01:00
Peter Simons fa23ff4a7d
Merge pull request #34651 from mnacamura/r-darwin-libcxx
R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin
2018-02-07 08:31:10 +01:00
Mitsuhiro Nakamura f4a031c63f R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin 2018-02-06 18:57:12 +09:00
Timo Kaufmann 272e930827 sage: fix non-deterministic build failures
The build was failing on some machines because of a `find` command that
touched files in different orders on different machines.

That confused `make`s timestamp mechanism.
2018-02-05 15:03:24 +01:00
Timo Kaufmann b223662ad1 sage: 8.0 -> 8.1, fix sandbox build
The sandboxed build was failing, because it relied heavily on
/usr/bin/env. This is fixed with a lot of shebang patching (both
to system packages and to sage-internal packages).
2018-01-26 14:42:24 +01:00
Daiderd Jordan 5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00
Silvan Mosberger 8e8a259df4
almonds: init at 2015-12-27 2018-01-23 14:16:28 +01:00
Mitsuhiro Nakamura 1ed47cf214 mathematica: enable installation of localized editions
For now English (default) and Japanese editions only.
Fill out information in `l10ns.nix` to add the other localized editions.
Example usage: `mathematica.override { lang = "ja"; }` derives Japanese edition.
2018-01-19 21:42:52 +09:00
Miguel Madrid Mencía 8fb2be6772
weka: 3.8.1 -> 3.8.2 2018-01-18 15:25:35 +01:00
Symphorien Gibol bf49c616ee giac: fix build
giac was broken somewhere between 310ad4 and b33b4a, see
https://hydra.nixos.org/build/67137469
libgfortran.so.3 was not found
2018-01-10 18:42:38 +01:00
Vladimír Čunát 1fcd92ce92
Merge branch 'master' into staging
A few thousand rebuilds from master, again.
Hydra: ?compare=1422362
2017-12-31 09:53:49 +01:00
Orivej Desh e87a82b010 cntk: mark as broken
It never succeeded to build.  @abbradar did not respond at
94dc37d622
2017-12-31 08:14:14 +00:00
John Ericson 4d2b763817
Merge pull request #26805 from obsidiansystems/cross-elegant
Make cross compilation elegant
2017-12-30 22:58:02 -05:00
John Ericson 046f091e0d treewide: Don't use envHook anymore
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
2017-12-30 22:04:22 -05:00
Frederik Rietdijk 2d0bead714 Merge remote-tracking branch 'upstream/master' into HEAD 2017-12-30 17:04:54 +01:00
Orivej Desh 77cc63950a wxmaxima: build with cmake
Fixes reported version number: see
https://github.com/NixOS/nixpkgs/pull/31657#issuecomment-354414642

"make check" did not run any tests with autotools, and is not defined with
cmake. ("make test" is not defined too.)
2017-12-29 21:00:03 +00:00
Robin Gloster ee1c85aee9 mariadb: lib -> connector-c 2017-12-29 02:18:35 +01:00
Vladimír Čunát 6f5d989478
treewide: checkMeta fixes for x86_64-linux 2017-12-07 07:50:47 -05:00
Peter Simons b0f82f0f2d R: update to 3.4.3 2017-11-30 18:45:48 +01:00
Peter Simons d70a021b95 maxima: 5.40.0 -> 5.41.0 2017-11-14 13:23:48 +01:00
Joerg Thalheim 21423521e6 wxmaxima: 15.04.0 -> 17.10.1
also fix crash at start-up due missing icons

fixes #18479
2017-11-14 11:28:00 +00:00
Michael Raskin 563b08c7c4 pari: 2.9.1 -> 2.9.3 2017-11-11 15:31:36 +01:00
Michael Raskin 85eac6ff73
Restrict platforms to what is known to work. 2017-11-06 01:25:04 +00:00
Timo Kaufmann fe68ba81d2 sage: 6.8 -> 8.0
This "un-breaks" sage while also updating it to 8.0.

It compiles sage with its dependencies as one big pile, which is not
the best approach but definately better than nothing for now.

To be able to shrink the huge output pile a little, it also splits
docs from the rest of the output.
2017-11-05 17:37:40 -06:00
Daiderd Jordan b93df24078 pari: enable darwin build 2017-10-30 18:24:22 +01:00
Edward Tjörnhammar 77d3869f27
colpack: init at 1.0.10 2017-10-29 10:20:54 +01:00
Tuomas Tynkkynen a4833730c4 cntk: Disable parallel building
https://hydra.nixos.org/build/62781346
2017-10-22 18:19:03 +03:00
Nikolay Amiantov 94dc37d622 cntk: init at 2.2 2017-10-19 13:24:24 +03:00
Nikolay Amiantov 57f82de364 caffe: 1.0-rc5 -> 1.0
Fix build with cudatoolkit9.
2017-10-19 12:47:30 +03:00
Gabriel Ebner 79ae9be220 libqalculate, qalculate-gtk: 2.0.0 -> 2.1.0 2017-10-10 13:28:38 +02:00
Orivej Desh 66d4941afe Merge branch 'master' into staging
* master: (48 commits)
  Mathematica: 11.0.1 -> 11.2.0
  kbfs: 20170922.f76290 -> 20171004.40555d
  packer: 1.0.3 -> 1.1.0
  libxdg-basedir: 1.0.2 -> 1.2.0
  fscrypt: 0.2.1 -> 0.2.2
  devtodo: init at 0.1.20
  keybase: 1.0.30 -> 1.0.33
  elixir: Fix locale problem on NixOS
  keybase-gui: 1.0.25 -> 1.0.33
  terraform: 0.10.2 -> 0.10.7  (#30055)
  emby: 3.2.32.0 -> 3.2.33.0
  sbcl: 1.3.21 -> 1.4.0
  ardour: 5.11 -> 5.12
  axoloti: fix evaluation
  axoloti: init at 1.0.12-1
  melpa-packages: Add new lean packages
  fastlane: init at 2.60.1
  nixos/traefik: guard example path
  go-ethereum: 1.7.0 -> 1.7.1
  xzgv: 0.9.1 -> 0.9.2
  ...
2017-10-05 07:41:39 +00:00
Guanpeng Xu 2eeb00441d Mathematica: 11.0.1 -> 11.2.0 2017-10-05 07:54:16 +02:00
Orivej Desh fda26c8476 Merge branch 'master' into staging
* master: (271 commits)
  pysmbc: clarify license
  pysmbc: fix license
  bazel: 0.5.4 -> 0.6.0 (#29990)
  googler: init at 3.3
  go: declare support for aarch64
  firefox-beta-bin: 56.0b5 -> 57.0b4
  spotify: 1.0.64.401.g9d720389-21 -> 1.0.64.407.g9bd02c2d-26
  gogs: 0.11.19 -> 0.11.29
  grafana: 4.5.1 -> 4.5.2
  mopidy-iris: 3.4.1 -> 3.4.9
  nextcloud: 12.0.2 -> 12.0.3
  haskell-json-autotype: jailbreak to fix build within LTS 9.x
  kore: fix up
  kore: init at 2.0.0
  glusterfs service: fix issues with useRpcbind
  tig: 2.2.2 -> 2.3.0
  haskell-hspec-core: enable test suite again
  hackage-packages.nix: automatic Haskell package set update
  librsvg: fix thumbnailer path
  awscli: 1.11.108 -> 1.11.162
  ...
2017-10-02 00:22:12 +00:00
Orivej Desh eaf9e31f86 Merge pull request #29859 from pvgoran/fix-gmsh
gmsh: 2.12.0 -> 3.0.5
2017-10-01 08:52:42 +00:00
Pavel Goran e57f8b67f3 gmsh: 2.12.0 -> 3.0.5 2017-10-01 08:51:56 +00:00
Orivej Desh 9592bf8c24 Merge pull request #29947 from symphorien/giac
giac, xcas: init at 1.4.9
2017-09-30 22:50:53 +00:00
Orivej Desh 0c14753a4a giac: refactor 2017-09-30 22:48:03 +00:00
Symphorien Gibol 10a612120f xcas, giac: add myself as maintainer 2017-09-30 21:40:50 +02:00
Symphorien Gibol 79df9105ba giac, xcas: init at 1.4.9 2017-09-30 12:29:31 +02:00
Peter Simons 4239d3bcba R: update to version 3.4.2 2017-09-29 15:21:09 +02:00
John Ericson f037625f87 Merge remote-tracking branch 'upstream/staging' into deps-reorg 2017-09-28 12:32:57 -04:00
Vincent Laporte b831b243ff clp: init at 1.16.11 2017-09-28 13:33:36 +00:00
Tuomas Tynkkynen 9824ca6975 caffe: Make 'bin' the first output
So ${caffe}/bin/foo always works in scripts.
2017-09-27 00:39:55 +03:00
Nikolay Amiantov 67bbe467a4 mxnet: disable GPU autodetection 2017-09-25 22:46:44 +03:00
Michael Raskin f7d7c7bedf singular: use gcc5
Progress on: #28643
Fixes: #29682
2017-09-23 10:16:47 +02:00