Commit graph

4735 commits

Author SHA1 Message Date
Sandro 6094bec3c3
Merge pull request #124997 from veprbl/pr/xfitter_format
xfitter: remove `hardeningDisable = [ "format" ];`
2021-05-31 00:56:26 +02:00
Dmitry Kalinkin b72b3c5571
xfitter: remove hardeningDisable = [ "format" ];
Not needed after f42aa7e1 ('cc-wrapper: set FC when langFortran is on')
2021-05-30 18:34:35 -04:00
github-actions[bot] 2867d5301f
Merge master into staging-next 2021-05-30 19:15:10 +00:00
Mauricio Collares 2c7d2ce295 sageWithDoc: fix documentation symlinks 2021-05-30 13:51:15 -03:00
github-actions[bot] f385b431a7
Merge master into staging-next 2021-05-27 06:45:59 +00:00
R. RyanTM 089915f634 bowtie2: 2.4.3 -> 2.4.4 2021-05-26 23:43:08 -07:00
R. RyanTM 14018b71dd mavproxy: 1.8.36 -> 1.8.37 2021-05-26 23:42:35 -07:00
github-actions[bot] 0e7ab2d48d
Merge master into staging-next 2021-05-26 18:54:42 +00:00
Gabriel Ebner 4aa2e32246
Merge pull request #124507 from collares/olean-cache-misses
lean: substitute release commit sha1 (so upstream oleans are compatible with nixpkgs lean)
2021-05-26 18:34:56 +02:00
Mauricio Collares cbaf78cdaa lean: substitute release commit sha1 2021-05-26 11:53:55 -03:00
R. RyanTM 15c278930c elan: 1.0.2 -> 1.0.6 2021-05-26 05:44:59 +00:00
github-actions[bot] 6d73490cb4
Merge master into staging-next 2021-05-26 01:11:31 +00:00
Pavol Rusnak 2c3cbef68d
Merge pull request #120840 from prusnak/viennarna
ViennaRNA: 2.4.17 -> 2.4.18
2021-05-26 00:03:55 +02:00
Pavol Rusnak 4bda49e963
ViennaRNA: 2.4.17 -> 2.4.18 2021-05-26 00:01:06 +02:00
Ryan Mulligan e2d59eee64
Merge pull request #124094 from r-ryantm/auto-update/marvin
marvin: 21.3.0 -> 21.9.0
2021-05-25 12:42:45 -07:00
R. RyanTM cb70ce62ab marvin: 21.3.0 -> 21.9.0 2021-05-23 02:24:31 +00:00
Jonathan Ringer b9b9cdb87c
Merge remote-tracking branch 'origin/staging' into staging-next 2021-05-22 19:23:14 -07:00
Jonathan Ringer 11a9ac00fc
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
 pkgs/tools/networking/xh/default.nix
2021-05-22 18:19:10 -07:00
Sandro Jäckel d6ff646b3f pythonPackages.smart_open: rename to smart-open 2021-05-22 15:02:50 -07:00
Stéphan Kochen c47425a230 sambamba: fix darwin build 2021-05-22 20:56:09 +02:00
github-actions[bot] d5714df652
Merge staging-next into staging 2021-05-22 06:21:58 +00:00
github-actions[bot] cc35c7fc85
Merge master into staging-next 2021-05-22 06:21:55 +00:00
Robert Scott bcc99b83d0 libpoly: fix darwin build
issue reported upstream
2021-05-21 20:21:20 -07:00
Michael Raskin d0fd8a029d
Merge pull request #123281 from r-ryantm/auto-update/jmol
jmol: 14.31.38 -> 14.31.39
2021-05-21 19:42:56 +00:00
Jonathan Ringer 6b15fdce86
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
 pkgs/shells/ion/default.nix
 pkgs/tools/misc/cicero-tui/default.nix
2021-05-20 22:11:42 -07:00
Mauricio Collares 22c86a0466 sageWithDoc: fix static asset deduplication 2021-05-20 18:29:02 -07:00
Mauricio Collares 874d1aba74 sageWithDoc: update sagedoc.py test for sphinx 3.5 2021-05-20 18:29:02 -07:00
Mauricio Collares cd9e8e284c sage: fix deprecation warning from matplotlib upgrade 2021-05-20 18:29:02 -07:00
Jonathan Ringer 14f3686af1
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
  pkgs/applications/terminal-emulators/alacritty/default.nix
  pkgs/servers/clickhouse/default.nix
2021-05-20 09:12:42 -07:00
markuskowa b0b97660af
Merge pull request #123667 from markuskowa/upd-molcas
openmolcas: 20.10 -> 21.02
2021-05-19 23:17:31 +02:00
Jonathan Ringer c1f8a15dac
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
  nixos/doc/manual/release-notes/rl-2105.xml
  pkgs/tools/security/sequoia/default.nix
2021-05-19 10:39:54 -07:00
Pavol Rusnak f7ed00be13
Merge pull request #123689 from prusnak/bcal
bcal: cleanup package, enable aarch64-darwin build
2021-05-19 17:47:35 +02:00
Pavol Rusnak 6996896b48
bcal: cleanup package, enable aarch64-darwin build 2021-05-19 16:36:17 +02:00
Timo Kaufmann 6cf6470429
Merge pull request #122624 from collares/pari-2.13
pari: 2.11.4 -> 2.13.1, update sage test expectations
2021-05-19 16:07:15 +02:00
Markus Kowalewski 40f276c07d
openmolcas: 20.10 -> 21.02 2021-05-19 13:44:46 +02:00
github-actions[bot] 7000ae2b9a
Merge master into staging-next 2021-05-19 00:55:36 +00:00
Stéphan Kochen 7c0c956a57 starspace: fix darwin build 2021-05-18 20:35:09 +02:00
Jonathan Ringer ca46ad3762
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
  pkgs/tools/package-management/cargo-release/default.nix
2021-05-18 11:03:38 -07:00
Pavol Rusnak 6be706bbe5
Merge pull request #123503 from stephank/fix-samblaster-darwin
samblaster: fix darwin build
2021-05-18 18:55:29 +02:00
Jonathan Ringer f7a112f6c4
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
  pkgs/applications/graphics/emulsion/default.nix
  pkgs/development/tools/misc/texlab/default.nix
  pkgs/development/tools/rust/bindgen/default.nix
  pkgs/development/tools/rust/cargo-udeps/default.nix
  pkgs/misc/emulators/ruffle/default.nix
  pkgs/tools/misc/code-minimap/default.nix
2021-05-18 08:57:16 -07:00
Stéphan Kochen 7e9451ffb3
rink: fix darwin build (#123501) 2021-05-18 10:34:25 -04:00
Stéphan Kochen 20f36556dc samblaster: fix darwin build 2021-05-18 13:41:51 +02:00
Sandro 64b7457313
Merge pull request #123329 from evils/kicad-symlink 2021-05-18 01:40:23 +02:00
Sandro f85bc843c2
Merge pull request #122759 from dotlambda/mono6 2021-05-18 01:25:35 +02:00
R. RyanTM 161b02937d gtkwave: 3.3.108 -> 3.3.109 2021-05-17 13:51:47 -07:00
R. RyanTM ea5ad2b8e0 gwyddion: 2.57 -> 2.58 2021-05-17 11:49:58 -07:00
Erik Bäckman 5b143ccc91
numworks-epsilon: 15.3.2 -> 15.5.0 (#122760)
Co-authored-by: erikbackman <erikbackman@users.noreply.github.com>
2021-05-17 19:16:51 +02:00
Sandro 83c5d21320
Merge pull request #123083 from stephank/fix-est-sfs-darwin
est-sfs: fix darwin build
2021-05-17 18:58:33 +02:00
Jonathan Ringer c227fb4b17
Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
	pkgs/development/tools/rust/cargo-cache/default.nix
	pkgs/development/tools/rust/cargo-embed/default.nix
	pkgs/development/tools/rust/cargo-flash/default.nix
	pkgs/servers/nosql/influxdb2/default.nix
2021-05-17 07:01:38 -07:00
Evils bed2e8ef28 kicad-unstable: 2021-05-13 -> 2021-05-16 2021-05-17 09:47:28 +02:00
Evils 9f6de20292 kicad: correctly handle share/metainfo and appdata
fixes issue 123299

blindly linking unstable's metainfo resulted in a dangling symlink
this is still share/appdata in the stable package so i linked that
2021-05-17 09:47:07 +02:00
Stéphan Kochen 04aa238c1a gnucap: broken on darwin
Gnucap relies on LD_LIBRARY_PATH both in its build process and in code,
which Darwin does not understand.
2021-05-16 23:51:10 -07:00
github-actions[bot] 3ff6965554
Merge master into staging-next 2021-05-17 06:22:23 +00:00
Austin Butler 66201e2c1d cntk: fix build 2021-05-16 20:03:06 -07:00
R. RyanTM 9682a2a496 jmol: 14.31.38 -> 14.31.39 2021-05-16 19:52:36 +00:00
github-actions[bot] 6cdac75d25
Merge staging-next into staging 2021-05-16 18:32:44 +00:00
github-actions[bot] 8c6d819143
Merge master into staging-next 2021-05-16 18:32:41 +00:00
Anderson Torres cf45c45605
Merge pull request #121588 from eduardosm/sip-rename
pythonPackages.sip: rename to sip_4, pythonPackages.sip_5: rename to sip
2021-05-16 13:31:55 -03:00
Jan Tojnar 684991c696
Merge branch 'master' into staging-next
- Thunderbird 68 has been dropped on master.
- gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
2021-05-16 15:34:51 +02:00
Vincenzo Mantova 4ef47f32d7 eukleides: use $CC instead of hardcoded gcc 2021-05-16 12:03:47 +01:00
Vladimír Čunát 9de0430aac
Merge #122322: eukleides: Fix build, expose tex package 2021-05-16 10:35:28 +02:00
Bjørn Forsman 3d18eddae2 pulseview: fix patch hash 2021-05-16 08:56:46 +02:00
R. RyanTM 9528bf9fd9 bowtie2: 2.4.2 -> 2.4.3 2021-05-16 02:53:03 -04:00
sophrosyne97 2558acf870 pulseview: fix build error 2021-05-16 08:50:47 +02:00
github-actions[bot] 9911b1c75b
Merge staging-next into staging 2021-05-16 01:01:01 +00:00
github-actions[bot] b484cef365
Merge master into staging-next 2021-05-16 01:00:58 +00:00
Sandro 6b5f106b05
Merge pull request #122930 from lopsided98/qgroundcontrol-update
qgroundcontrol: 4.1.2 -> 4.1.3
2021-05-15 21:32:56 +02:00
Sandro 936dd70d45
Merge pull request #122791 from lopsided98/mavproxy-update 2021-05-15 21:31:03 +02:00
github-actions[bot] c10600230e
Merge staging-next into staging 2021-05-15 18:30:31 +00:00
github-actions[bot] f1b78f8618
Merge master into staging-next 2021-05-15 18:30:28 +00:00
Sandro b4034ccbc5
Merge pull request #119986 from evils/kicad-usage 2021-05-15 20:12:08 +02:00
github-actions[bot] 49ec716c04
Merge staging-next into staging 2021-05-15 12:25:36 +00:00
github-actions[bot] ec10b0958d
Merge master into staging-next 2021-05-15 12:25:33 +00:00
Stéphan Kochen d707979a73 est-sfs: fix darwin build 2021-05-15 12:10:05 +02:00
Stéphan Kochen acf640be7b elan: fix darwin build 2021-05-15 12:02:46 +02:00
Stefan Frijters 06e7dc2f43
eukleides: Update license
See license section in the README.
2021-05-15 10:18:06 +02:00
Stefan Frijters 30b5330e85
eukleides: Fix build, expose tex package 2021-05-15 10:18:06 +02:00
github-actions[bot] 78ae7ac75e
Merge staging-next into staging 2021-05-15 06:22:25 +00:00
Jonathan Ringer 0546e68ef7
Merge remote-tracking branch 'origin/master' into staging-next 2021-05-14 21:57:09 -07:00
Stéphan Kochen 2adca7ae14
cd-hit: fix darwin build (#123026) 2021-05-14 17:27:16 -04:00
Evils e2661b00f7 kicad: add sanitizeAddress & sanitizeThreads options
only kicad 5.99 or later are affected
was briefly -DKICAD_SANITIZE=ON
are mutually exclusive according to a compiler error
2021-05-14 09:03:53 +02:00
Evils e37d772beb kicad: avoid rebuild on date change
the date changes more often than most of the inputs
the date can also change on the base without other changes
  this causes a substantial rebuild for no reason
2021-05-14 09:03:53 +02:00
Evils 7dc05fed4f kicad: bunch of minor cleanup
squash of the following

kicad: makeFlags: optional -> optionals

kicad: remove -1 in version string, no more patch

should have been removed in a52e974cff

kicad: remove berce as maintainer

kicad: gtk3 -> wxGTK.gtk

use wxGTK.gtk rather than gtk3

add graphviz as doxygen wants it (no idea if doxygen is required...)
  minor compilation warning

kicad: rearrange / sort inputs

separate optional deps and options

kicad: clear some configuration warnings

linux specific stuff that's wanted by something in config

kicad: fix opening bug report in firefox wayland

may be removed when kicad goes native?
2021-05-14 09:03:53 +02:00
Evils 3fe839e78c kicad: 5.1.9 -> 5.1.10 2021-05-14 09:03:53 +02:00
Evils 7a69e69a0b kicad-unstable: 2020-12-23 -> 2021-05-13 2021-05-14 09:03:46 +02:00
zowoq 004f8cd986 Merge staging-next into staging 2021-05-14 16:32:43 +10:00
Evils b54dfb232e kicad-unstable: link through new /share/metainfo 2021-05-14 08:06:25 +02:00
Evils 552a5a900c kicad-unstable: set KICAD6 env vars 2021-05-14 08:06:25 +02:00
Evils 95de1291b2 kicad-unstable: use wxPython 4.1 2021-05-14 08:06:24 +02:00
github-actions[bot] bf5d8bb531
Merge master into staging-next 2021-05-14 00:58:11 +00:00
Ben Wolsieffer 6e3b082026 qgroundcontrol: 4.1.2 -> 4.1.3 2021-05-13 20:24:22 -04:00
hjones2199 036e234a66
siril: fix build with glib-2.68 dependency (#122874) 2021-05-13 15:03:29 -04:00
Ben Wolsieffer 09ac4d615a mavproxy: clarify license as gpl3Plus
The README states: "MAVProxy is released under the GNU General Public License v3
or later"
2021-05-12 22:51:36 -04:00
Ben Wolsieffer 7d652d0c23 mavproxy: 1.8.34 -> 1.8.36 2021-05-12 22:48:04 -04:00
Mauricio Collares 9847e84d55 pari: 2.11.4 -> 2.13.1, update sage test expectations 2021-05-12 21:21:14 -03:00
Robert Schütz d099e7558e mono: 5 -> 6 2021-05-12 21:32:40 +02:00
github-actions[bot] e2cf474986
Merge staging-next into staging 2021-05-12 06:21:36 +00:00
github-actions[bot] d8fb37f470
Merge master into staging-next 2021-05-12 06:21:33 +00:00
Mauricio Collares b413d3570a sage: 9.3.rc4 -> 9.3 2021-05-11 16:49:32 -03:00
Mauricio Collares f206ba8ab9 singular: replace local patches by upstream ones 2021-05-11 16:49:10 -03:00
Mauricio Collares 391028eb3a pynac: add more patches, link to sage trac 2021-05-11 16:49:10 -03:00
Mauricio Collares 2a95fe1aea gap: 4.11.0 -> 4.11.1 2021-05-11 16:49:10 -03:00
Jan Tojnar 7982550ac4
Merge branch 'staging-next' into staging 2021-05-11 09:09:10 +02:00
github-actions[bot] 49b8e6f7d4
Merge master into staging-next 2021-05-11 00:48:15 +00:00
maralorn 881d2af5ee
Merge pull request #122286 from NixOS/haskell-updates 2021-05-11 02:31:06 +02:00
Malte Brandy 39c0dd99a4
tamarin-prover: Mark broken 2021-05-11 01:56:48 +02:00
Sandro 0a3c566d56
Merge pull request #122396 from jbedo/octopus
octopus: 0.7.3 -> 0.7.4
2021-05-11 01:19:54 +02:00
Justin Bedo 40eeb2c6d3
octopus: 0.7.3 -> 0.7.4 2021-05-11 08:46:00 +10:00
Sandro d2ea330f62
Merge pull request #122482 from hjones2199/kstars353 2021-05-11 00:22:01 +02:00
Hunter Jones d4077929d6 kstars: 3.5.2 -> 3.5.3 2021-05-10 15:16:04 -05:00
Eduardo Sánchez Muñoz 08a26e4579 pythonPackages.sip: rename to sip_4
sip 4 is the old and unmaintained version
2021-05-10 20:41:38 +02:00
github-actions[bot] 61fa3fdde8
Merge master into staging-next 2021-05-10 18:28:17 +00:00
Ryan Mulligan c72c9f46e2
Merge pull request #122391 from r-ryantm/auto-update/jmol
jmol: 14.31.36 -> 14.31.38
2021-05-10 10:17:33 -07:00
Jan Tojnar 594a885912
Merge branch 'staging-next' into staging 2021-05-10 09:45:47 +02:00
github-actions[bot] 1e3d91bd19
Merge master into staging-next 2021-05-10 00:48:32 +00:00
R. RyanTM 4ff0c782a3 jmol: 14.31.36 -> 14.31.38 2021-05-09 20:32:06 +00:00
Ben Siraphob 418a37d99c coq2html: 20170720 -> 1.2 2021-05-09 22:00:15 +02:00
Vladimír Čunát 5663b2b2d3
Merge branch 'master' into staging-next
(a trivial conflict in transmission)
2021-05-09 09:31:55 +02:00
R. RyanTM 2c143443f7 libpoly: 0.1.8 -> 0.1.9 2021-05-08 18:34:00 -07:00
R. RyanTM 5ab09faafb gretl: 2021a -> 2021b 2021-05-08 17:11:36 -07:00
Jan Tojnar dd78ce1c53
Merge branch 'staging-next' into staging 2021-05-08 20:59:05 +02:00
Martin Weinelt 9651084620 Merge remote-tracking branch 'origin/master' into staging-next 2021-05-08 14:43:43 +02:00
Jonathan Ringer 1d85caaa26 root: fix build 2021-05-08 01:29:18 -07:00
Jan Tojnar 468cb5980b gnome: rename from gnome3
Since GNOME version is now 40, it no longer makes sense to use the old attribute name.
2021-05-08 09:47:42 +02:00
Daniël de Kok 85f96822a0 treewide: fix cargoSha256/cargoHash
Rust 1.50.0 incorporated a Cargo change (rust-lang/cargo#8937) in
which cargo vendor erroneously changed permissions of vendored
crates. This was fixed in Rust
1.51.0 (rust-lang/cargo#9131). Unfortunately, this means that all
cargoSha256/cargoHashes produced during the Rust 1.50.0 cycle are
potentially broken.

This change updates cargoSha256/cargoHash tree-wide.

Fixes #121994.
2021-05-08 00:36:37 -07:00
github-actions[bot] b4416b52c5
Merge master into staging-next 2021-05-08 00:46:50 +00:00
Malte Brandy 2a11f1f5cc
Merge branch 'master' into haskell-updates 2021-05-07 15:03:54 +02:00
github-actions[bot] 12193913a1
Merge staging-next into staging 2021-05-07 12:23:21 +00:00
Robert Hensing aaec26af39
Merge pull request #121896 from raboof/extract-version-test-to-utility
test-utilities: version test
2021-05-07 11:56:01 +02:00
Arnout Engelen b68130fd2c
test-utilities: version test
Extract 'version test' to a reusable test utility as discussed in
https://github.com/NixOS/nixpkgs/pull/119636#issuecomment-826137021 and
2021-05-07 09:53:35 +02:00
sternenseemann eaeb69862c petrinizer: restrict platforms by sbv
sbv has the most limited range of platforms of the dependencies.
2021-05-06 16:24:58 +02:00
sternenseemann 73c2dd4aa6 petrinizer: fix build
* take z3 haskell package from haskellPackages
* take sbv 7.13 from haskellPackages, apply patch fixing build
  with GHC >= 8.8.8
2021-05-06 11:43:59 +02:00
github-actions[bot] dbc1478d23
Merge staging-next into staging 2021-05-05 06:21:29 +00:00
R. RyanTM 59cd52dc40 gmsh: 4.8.3 -> 4.8.4 2021-05-05 01:26:49 -04:00
github-actions[bot] 98d7aac597
Merge staging-next into staging 2021-05-04 00:49:43 +00:00
Dmitry Kalinkin 1cfcfccc6e
Merge pull request #121411 from veprbl/pr/xfitter_darwin_fix
xfitter: fix for darwin
2021-05-03 17:37:34 -04:00
github-actions[bot] 5e177b16b1
Merge staging-next into staging 2021-05-03 18:25:49 +00:00
edef 4e4c45efac
Merge pull request #121375 from deviant/bump-rink
rink: 0.6.0 -> 0.6.1
2021-05-03 13:57:36 +00:00
github-actions[bot] a4c3a2d732
Merge staging-next into staging 2021-05-03 12:26:48 +00:00
Gabriel Ebner 62458574e3
Merge pull request #121361 from r-ryantm/auto-update/lean
lean: 3.29.0 -> 3.30.0
2021-05-03 11:13:53 +02:00
github-actions[bot] a7e07bddd5
Merge staging-next into staging 2021-05-02 12:24:53 +00:00
Luke Granger-Brown 884cf29501 dcm2niix: 1.0.20201102 -> 1.0.20210317 2021-05-02 11:10:40 +00:00
R. RyanTM ad5f251230 dcm2niix: 1.0.20200331 -> 1.0.20201102 2021-05-02 03:14:11 +00:00
github-actions[bot] e6037ce5fe
Merge staging-next into staging 2021-05-02 00:58:46 +00:00
Luke Granger-Brown ebf371726d sumorobot-manager: fix compilation 2021-05-02 00:12:19 +00:00
R. RyanTM 99f8bc3e03 sumorobot-manager: 0.9.0 -> 1.0.0 2021-05-02 00:02:46 +00:00
github-actions[bot] 49721bed32
Merge staging-next into staging 2021-05-01 18:26:21 +00:00
Dmitry Kalinkin c846fa1674
xfitter: fix for darwin
Fixes: 8984fc29 ('xfitter: fix build w/glibc-2.32')
2021-05-01 13:15:06 -04:00
Sandro 4b2c9640e7
Merge pull request #120613 from erikbackman/master 2021-05-01 18:42:40 +02:00
V 5a835e6e92 rink: 0.6.0 -> 0.6.1 2021-05-01 10:46:51 +02:00