Commit graph

10 commits

Author SHA1 Message Date
Sandro Jäckel 3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Renato Alves 459c5ec3b1
pythonPackages.pysam: Disable failing tests unrelated to packaging
These will be fixed upstream and are due to format changes introduced
in samtools and htslib 1.11
2020-10-30 01:28:00 +01:00
Renato Alves 0a41e3f938 pythonPackages.pysam: add libdeflate and enable tests
Some tests still fail due to upstream reasons so we skip those.

Note also that we are not using nix's pytestCheckHook due to
pysam detecting how it's loaded which conflicts with how
pytestCheckHook runs tests. In addition, the selection mode used
by disabledTests causes more tests than the failing ones to be
skipped, which is undesired.
See the discussion in https://github.com/NixOS/nixpkgs/pull/100823
2020-10-19 22:03:08 -07:00
R. RyanTM 970e7e15f3 python37Packages.pysam: 0.15.4 -> 0.16.0.1 2020-10-16 10:38:04 -07:00
Renato Alves bf88bf47d1
pysam: 0.15.3 -> 0.15.4
Also disable tests until upstream test data issues are resolved.
See link in comment in code for more information.
2020-02-21 10:12:32 +01:00
Jonathan Ringer 5961f211f3 python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00
Renato Alves bed6814c83
pysam: 0.15.2 -> 0.15.3 2019-10-05 11:00:55 +02:00
R. RyanTM eb6df5f186 python37Packages.pysam: 0.15.1 -> 0.15.2
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.7-pysam/versions
2019-01-28 20:08:47 +00:00
Orivej Desh e78cf6ecba python.pkgs.pysam: 0.13.0 -> 0.15.1 2018-09-21 22:48:56 +00:00
Renato Alves 37680b046c
pysam: init at 0.13.0
A python library to interact with SAM/BAM/CRAM files
2018-02-06 00:53:32 +01:00