Commit graph

4535 commits

Author SHA1 Message Date
R. RyanTM 96e1cc0768 lean: 3.29.0 -> 3.30.0 2021-05-01 05:49:45 +00:00
John Ericson 17305d2df0
Merge pull request #111487 from Ericson2314/llvm-outputs-and-cross-compile-tools
llvmPackages: Clean up outputs
2021-04-30 11:28:08 -04:00
github-actions[bot] d7882499f8
Merge staging-next into staging 2021-04-30 12:26:14 +00:00
Michael Raskin ee4684f052
Merge pull request #117716 from idontgetoutmuch/master
Fix https://github.com/NixOS/nixpkgs/issues/117715
2021-04-30 07:28:43 +00:00
Andrew Childs 7869d16545 llvmPackages: Multuple outputs for everythting
Also begin to start work on cross compilation, though that will have to
be finished later.

The patches are based on the first version of
https://reviews.llvm.org/D99484. It's very annoying to do the
back-porting but the review has uncovered nothing super major so I'm
fine sticking with what I've got.

Beyond making the outputs work, I also strove to re-sync the packages,
as they have been drifting pointlessly apart for some time.

----

Other misc notes, highly incomplete

- lvm-config-native and llvm-config are put in `dev` because they are
  tools just for build time.

- Clang no longer has an lld dep. That was introduced in
  db29857eb3, but if clang needs help
  finding lld when it is used we should just pass it flags / put in the
  resource dir. Providing it at build time increases critical path
  length for no good reason.

----

A note on `nativeCC`:

`stdenv` takes tools from the previous stage, so:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.stdenv.cc`: `(?0, ?1, x)`

while:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.targetPackages`: `(x, x, ?2)`
3. `pkgsBuildBuild.targetPackages.stdenv.cc`: `(?1, x, x)`
2021-04-30 05:41:00 +00:00
github-actions[bot] 3ad64733d9
Merge staging-next into staging 2021-04-29 18:28:08 +00:00
Dominic Steinitz 732ab3d4e2 Incorporate suggeston by collares 2021-04-29 17:34:34 +01:00
R. RyanTM 5b7a76e2a6 jmol: 14.31.35 -> 14.31.36 2021-04-29 12:39:03 +00:00
github-actions[bot] 01105a117a
Merge staging-next into staging 2021-04-29 06:21:55 +00:00
R. RyanTM 5122077801 gmsh: 4.8.1 -> 4.8.3 2021-04-29 00:17:51 -04:00
R. RyanTM e99e9f2d47 elan: 1.0.0 -> 1.0.2 2021-04-29 00:04:34 -04:00
github-actions[bot] 655989d7b3
Merge staging-next into staging 2021-04-28 00:15:29 +00:00
Gabriel Ebner a062505e10
Merge pull request #120177 from r-ryantm/auto-update/elan
elan: 0.11.0 -> 1.0.0
2021-04-27 22:52:12 +02:00
R. RyanTM 32cb3382e5 elan: 0.11.0 -> 1.0.0 2021-04-27 22:32:13 +02:00
Gabriel Ebner abbc2384d7
Merge pull request #120822 from r-ryantm/auto-update/lean
lean: 3.28.0 -> 3.29.0
2021-04-27 22:28:19 +02:00
erikbackman 95b40e4143 (numworks-epsilon): init at 15.3.2 2021-04-27 19:07:25 +02:00
R. RyanTM 4ccb9422c7 lean: 3.28.0 -> 3.29.0 2021-04-27 05:34:13 +00:00
github-actions[bot] e30742adc3
Merge staging-next into staging 2021-04-26 12:06:35 +00:00
Vincent Laporte 35dfa0e927 alt-ergo: 2.3.3 → 2.4.0 2021-04-26 08:32:18 +02:00
github-actions[bot] 28c3da370d
Merge staging-next into staging 2021-04-26 06:05:56 +00:00
R. RyanTM 224fc21cc3 tetgen: 1.5.1 -> 1.6.0 2021-04-26 01:32:28 -04:00
github-actions[bot] 8634c6f7d1
Merge staging-next into staging 2021-04-26 00:17:03 +00:00
Mauricio Collares e1ad2f5aa4 sage: remove cypari2 override
This reverts commit c12ef05bda.
2021-04-25 18:21:58 -03:00
Michael Raskin 14f65f0dc5
Merge pull request #116365 from omasanori/sage-9.3
sage: 9.2 -> 9.3
2021-04-25 21:17:32 +00:00
github-actions[bot] 9a945aac72
Merge staging-next into staging 2021-04-25 18:14:18 +00:00
Eduardo Sánchez Muñoz 6b9e396a07 qalculate-gtk: 3.17.0 -> 3.18.0 2021-04-25 16:17:26 +02:00
github-actions[bot] 944e32775d
Merge staging-next into staging 2021-04-24 00:16:20 +00:00
Alyssa Ross 4f4d95bbc2
Merge remote-tracking branch 'nixpkgs/master' into staging-next
Conflicts:
	pkgs/development/python-modules/pyvex/default.nix
	pkgs/top-level/python-packages.nix
2021-04-23 13:49:12 +00:00
Michael Raskin 2a04a9ce44
Merge pull request #120168 from r-ryantm/auto-update/clingo
clingo: 5.4.1 -> 5.5.0
2021-04-23 08:51:33 +00:00
github-actions[bot] 0d97d9f23b
Merge staging-next into staging 2021-04-23 00:15:42 +00:00
github-actions[bot] 481a9bc47c
Merge master into staging-next 2021-04-23 00:15:39 +00:00
R. RyanTM 82bc3d6c28 clingo: 5.4.1 -> 5.5.0 2021-04-22 07:44:27 +00:00
R. RyanTM e230004975 calc: 2.12.9.1 -> 2.13.0.1 2021-04-22 06:59:52 +00:00
Masanori Ogino 090b71f627 sage: 9.2 -> 9.3.rc4
Co-authored-by: Mauricio Collares <mauricio@collares.org>
2021-04-22 14:06:56 +09:00
Mauricio Collares 00d2e24395 eclib: 20210223 -> 20190909
This reverts commits 003705ef08
and ef615b5a61.
2021-04-22 14:06:56 +09:00
Garaba Flórián a0f410646c sage: use threejs fork 2021-04-22 14:06:56 +09:00
Mauricio Collares 090165d7c1 singular: disable vspace on aarch64 2021-04-22 14:06:56 +09:00
Mauricio Collares cd7cf5942b singular: use older autoconf macro to unbreak aarch64 2021-04-22 09:01:30 +09:00
Mauricio Collares aebef1703f singular: import aarch64 support patch 2021-04-22 09:01:07 +09:00
Timo Kaufmann ceaf48fdb2 singular: 4.1.1p2 -> 4.2.0p2
Adds proper tests. Also removes the "enableFactory" option because
singular actually enables factory by default and explicitly disabling it
breaks the build. So the option was never really available.
2021-04-22 09:01:07 +09:00
Mauricio Collares cd215e793a pynac: 0.7.26 -> 0.7.27 2021-04-22 09:01:07 +09:00
Mauricio Collares 79046fb4f8 gap: 4.10.2 -> 4.11.0 2021-04-22 09:01:07 +09:00
github-actions[bot] a260b67879
Merge staging-next into staging 2021-04-21 12:06:26 +00:00
github-actions[bot] 9b3e698b14
Merge master into staging-next 2021-04-21 12:06:23 +00:00
Sandro 59f840f3d5
Merge pull request #119055 from eduardosm/kicad 2021-04-21 06:28:21 +02:00
Mario Rodas 8b2b6e4e11
Merge pull request #119682 from marsam/update-beluga
beluga: 2020-03-11 -> 1.0
2021-04-20 22:22:02 -05:00
github-actions[bot] 6929a896cf
Merge staging-next into staging 2021-04-20 12:06:48 +00:00
github-actions[bot] 960439e003
Merge master into staging-next 2021-04-20 12:06:46 +00:00
Maximilian Bosch 8389dcb67d
Merge pull request #119911 from jbedo/octopus
octopus: 0.7.1 -> 0.7.3
2021-04-20 10:58:42 +02:00
github-actions[bot] cf0edc0dea
Merge staging-next into staging 2021-04-20 06:06:28 +00:00
github-actions[bot] e605a07cc0
Merge master into staging-next 2021-04-20 06:06:25 +00:00
R. RyanTM 44a83a3cb6 gmsh: 4.8.0 -> 4.8.1 2021-04-19 22:37:39 -04:00
Justin Bedo def7c82f88
octopus: 0.7.1 -> 0.7.3 2021-04-20 10:13:25 +10:00
Jörg Thalheim b2a1e04eed
Merge remote-tracking branch 'upstream/staging-next' into HEAD 2021-04-17 16:37:04 +02:00
github-actions[bot] f620e30ca4
Merge master into staging-next 2021-04-17 00:15:03 +00:00
Vincent Laporte ab16ad8764 coq_8_13: 8.13.1 → 8.13.2 2021-04-16 22:32:31 +02:00
Alyssa Ross e459db3f81 glsurf: fix license
The README says GPL 2 or any later version, not LGPL.
2021-04-16 14:06:10 +00:00
Alyssa Ross 70e33e3ae3 glsurf: use current giflib
This requires bumping the version of camlimages used by glsurf to a
version that supports current giflib.  The most recent versions of
camlimages (even of 4.x) don't support ocaml 4.01 any more, so I've
upgraded to 4.1.2 here, the last version that supports ocaml 4.01 (and
which happily supports current giflib).
2021-04-16 14:06:10 +00:00
Alyssa Ross 6e3b5fd046 libungif: remove in favour of giflib
libungif was merged into giflib in 2006, and hasn't been updated
since.  All non-broken packages still using it build fine with giflib.

See <http://giflib.sourceforge.net/history.html>.
2021-04-16 14:06:10 +00:00
Martin Weinelt 7cf67850c0
Merge branch 'master' into staging-next 2021-04-15 01:01:26 +02:00
Sandro 28fb287d4b
Merge pull request #118610 from GregorySchwartz/init/macs2 2021-04-14 21:15:38 +02:00
Gregory W. Schwartz b7763a8287 macs2: init at 2.2.7.1
Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Renamed package, updated version, set pypi, and added import test.

Update pkgs/applications/science/biology/MACS2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Add comment about error for checking.

Two spaces indent.
2021-04-14 10:17:53 -04:00
Vladimír Čunát d2eb7a7887
Merge branch 'staging' into staging-next
A few conflicts but relatively clear ones (I think).
2021-04-14 10:08:25 +02:00
Dmitry Kalinkin a469a7be55
sherpa: compile with --enable-pythia flag 2021-04-13 09:34:42 -04:00
Luke Granger-Brown 08b22e605b Merge remote-tracking branch 'upstream/staging-next' into down-integrate-staging 2021-04-12 18:49:01 +00:00
hjones2199 79c3609603
celestia: 1.6.1 -> 1.6.2.2 (#117999)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-04-12 20:17:17 +02:00
Fabian Affolter e4149e6e0b
rink: specify license 2021-04-11 23:18:32 +02:00
R. RyanTM 12518ff683 rink: 0.5.1 -> 0.6.0 2021-04-11 14:49:45 +00:00
Eduardo Sánchez Muñoz b5c90bb4da kicad: fix license
https://kicad.org/about/licenses/
2021-04-10 20:39:02 +02:00
Eduardo Sánchez Muñoz 427edc8b5a kicad: include desktop, icon and mime files
Fixes https://github.com/NixOS/nixpkgs/issues/106295.
2021-04-10 18:55:04 +02:00
Jan Tojnar 625ce6c7f6 Merge branch 'staging-next' into staging
In python-packages.nix, resolve conflict between 50d604314e and 187d0371ab.
2021-04-08 17:14:31 +02:00
Sandro 32b567d9e6
Merge pull request #118775 from lopsided98/qgroundcontrol-update
qgroundcontrol: 4.1.1 -> 4.1.2
2021-04-08 09:57:15 +02:00
Ben Wolsieffer 1e52d002bb qgroundcontrol: 4.1.1 -> 4.1.2 2021-04-08 00:04:07 -04:00
github-actions[bot] 1bd1969867
Merge staging-next into staging 2021-04-06 18:15:33 +00:00
Jan Tojnar 70babe5bcf Merge branch 'staging-next' into staging 2021-04-06 16:25:41 +02:00
voidless b6c315b4fb geogebra6: 6_0_620_0 -> 6_0_631_0 2021-04-06 10:52:30 +02:00
Dmitry Kalinkin 1d93243467
root: 6.22.06 -> 6.22.08 2021-04-06 02:41:06 -04:00
Gregory Schwartz 9bf867612d
meme-suite: init at 5.1.1 (#118603)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2021-04-05 22:43:27 +02:00
Sandro Jäckel 3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Frederik Rietdijk 1e7ed8b2f3
Merge branch 'staging' into python-unstable 2021-04-04 12:59:12 +02:00
Sandro Jäckel 33a395f195
yacc: deprecate alias
and add a new line after the alphabetically sorting to please my inner monk
2021-04-04 03:18:58 +02:00
Frederik Rietdijk c12ef05bda sage: keep cypari2 at 2.1.1 2021-04-03 17:49:44 +02:00
Frederik Rietdijk d20a05e963 libpoly: use python3 2021-04-03 17:06:22 +02:00
Frederik Rietdijk 7865ac1046 lean2: stay with python2
broken, so who knows...
2021-04-03 17:06:21 +02:00
Frederik Rietdijk 7368564f99 gurobi: stay with python2 2021-04-03 17:06:08 +02:00
Frederik Rietdijk ee258981bf ginac: use python3 2021-04-03 17:06:07 +02:00
Jack Gerrits dfab218b9b vowpal-wabbit: 8.9.2 -> 8.10.0 2021-04-01 13:46:09 -04:00
Mario Rodas d2275796d1 beluga: 2020-03-11 -> 1.0 2021-04-01 04:20:00 +00:00
Sandro 498cb76bdf
Merge pull request #117799 from LeSuisse/aliza-1.98.57
aliza: 1.98.43 -> 1.98.57
2021-03-30 17:18:15 +02:00
Sandro 9e24497453
Merge pull request #117970 from mpoquet/simgrid-3.26-to-3.27
simgrid: 3.26 -> 3.27
2021-03-30 14:28:37 +02:00
Ryan Mulligan f3262c2a3e
Merge pull request #117648 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.0 -> 2.25.1
2021-03-29 16:10:25 -07:00
Millian Poquet 99a5de6ebc simgrid: 3.26 -> 3.27 2021-03-29 21:20:27 +02:00
Justin Bedo 76bd953162 bedops: init 2.4.39 2021-03-28 22:27:51 -04:00
Maximilian Bosch b8779b59d5
Merge pull request #117760 from r-ryantm/auto-update/calc
calc: 2.12.9.0 -> 2.12.9.1
2021-03-28 23:35:49 +02:00
Maximilian Bosch 4fc2ef2c5e
stellarium: 0.20.4 -> 0.21.0
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.0
2021-03-28 22:46:57 +02:00
Ryan Mulligan 9a35bc87e8
Merge pull request #117607 from r-ryantm/auto-update/marvin
marvin: 21.2.0 -> 21.3.0
2021-03-27 20:35:56 -07:00
Thomas Gerbet f801e2e92c aliza: 1.98.43 -> 1.98.57 2021-03-27 23:49:33 +01:00
R. RyanTM 190a6f04b6 calc: 2.12.9.0 -> 2.12.9.1 2021-03-27 07:21:16 +00:00
Sandro 53734a4355
Merge pull request #117730 from veprbl/pr/snakemake_6_0_5
snakemake: 5.28.0 -> 6.0.5
2021-03-27 02:44:44 +01:00
Dmitry Kalinkin 8887f4655e
snakemake: 5.28.0 -> 6.0.5 2021-03-26 18:32:26 -04:00