Commit graph

474 commits

Author SHA1 Message Date
John Ericson 2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system
It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
Robert Schütz a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Jan Tojnar c1e53166ad
Revert "sympow: don't use placeholder"
This reverts commit bae15c811f.
2018-08-30 18:18:30 +02:00
Timo Kaufmann c614c15f93
Merge pull request #45257 from timokau/openblas-pc
openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
Benjamin Hipple 291de70ed6 scs: init at 2.0.2 (#45294) 2018-08-23 23:26:41 +02:00
Timo Kaufmann 26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Vladimír Čunát 153a19df05
Merge branch 'master' into staging-next
Hydra: ?compare=1474536
2018-08-20 09:15:33 +02:00
Timo Kaufmann 8014c7f186
Merge pull request #45013 from jbaum98/fflas-ffpack_darwin
fflas-ffpack: Add darwin support
2018-08-19 16:24:52 +02:00
Jake Waksbaum 8374400cec fflas-ffpack: Add darwin support 2018-08-18 20:28:06 +00:00
Benjamin Hipple 65bb0b23b9 Add platforms.all 2018-08-18 12:11:06 -04:00
Benjamin Hipple 460029cf94 ecos: init at 2.0.6 2018-08-18 03:38:50 +00:00
Vladimír Čunát 14aa936ec5
Merge branch 'staging-next' into staging 2018-08-17 20:53:27 +02:00
Vladimír Čunát cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Sarah Brofeldt 692c02ff4b
Merge pull request #44993 from bcdarwin/MIRTK
mirtk: init at 2.0.0
2018-08-16 10:51:12 +02:00
Jake Waksbaum c0c854da95 zn_poly: Add darwin support 2018-08-14 00:49:42 -04:00
Ben Darwin 0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Vladimír Čunát ded9a4b1aa
Merge branch 'staging-next' into staging
Commits from master, conflict resolutions, etc.
2018-08-13 20:57:50 +02:00
Vladimír Čunát 00df25ee57
Merge branch 'master' into staging-next
Hydra: ?compare=1472947
2018-08-12 10:33:41 +02:00
Jan Malakhovski b2563a55b7 nifticlib: disable tests 2018-08-11 09:35:38 +00:00
Jake Waksbaum 6385e5ffda lcalc: Add darwin support (#44850) 2018-08-10 09:53:52 +02:00
Frederik Rietdijk d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann aabc55e154 libhomfly: init at 1.02r5
libhomfly is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:33 +02:00
Timo Kaufmann 34c2f4150b libbraiding: init at 1.0
libbraiding is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:32 +02:00
Timo Kaufmann e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
John Ericson db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
Frederik Rietdijk ad47d658d1 Merge master into staging-next 2018-07-21 19:43:53 +02:00
Jörg Thalheim 218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk 8213ff161c Merge master into staging-next 2018-07-19 18:24:24 +02:00
Luke Adams eba8679bc5 cudnn*_cudatoolkit*: use public NVIDIA mirror (#31551)
* cudnn*_cudatoolkit*: use NVIDIA mirror instead of requireFile

* cudnn_cudatoolkit7: update hash since public mirror is different
2018-07-18 03:21:57 +00:00
Will Dietz 1b3d8eefe3 openblas: backport another patch, fix crash w/Go and Octave
Also fixes numpy crashing during tests w/musl.
2018-07-12 12:03:26 -05:00
Timo Kaufmann d2f0fc1f41 openblas: backport fix
https://github.com/xianyi/OpenBLAS/issues/1666

Causing test failures in cvxopt and (according to an openblas issue) numpy.
2018-07-11 22:06:32 +02:00
aszlig c8ed322b04
openblas: 0.3.0 -> 0.3.1
Since the exposure of the version attribute done in
892a0e8ff4, the OpenBLAS build fails for
i686-linux:

https://nix-cache.s3.amazonaws.com/log/wi79zyfmwdpwx7bm29dzqh4vglx3x550-openblas-0.3.0.drv

According to @edolstra the build slaves of Hydra updated to a new
kernel, which seems to be the real cause for this issue. The latter is
already tracked upstream[1] and a fix[2] is already included in version
0.3.1.

This very update cases 4795 rebuilds across all architectures we
support, so it's still not significant enough to go through staging. In
addition the number of rebuilds doesn't include the amount of builds
that are currently failing.

My original idea was to add a patch just for fixing this on i686-linux
and do the real update via staging, but the amount of rebuilds still is
in an acceptable range IMO and @edolstra agreed on that on IRC.

[1]: https://github.com/xianyi/OpenBLAS/issues/1575
[2]: https://github.com/xianyi/OpenBLAS/pull/1583

Signed-off-by: aszlig <aszlig@nix.build>
Cc: @ttuegel
2018-07-01 18:46:36 +02:00
Timo Kaufmann 5d78baa37a sympow: actually install datafiles 2018-06-30 01:20:46 +02:00
Timo Kaufmann 082169ab02 fetchurl: add sageupstream mirror 2018-06-30 01:20:44 +02:00
Timo Kaufmann 892a0e8ff4 openblas: expose version attribute 2018-06-30 01:20:44 +02:00
Matthew Bauer 753544ab52
Merge pull request #42471 from r-ryantm/auto-update/openlibm
openlibm: 0.5.5 -> 0.6.0
2018-06-28 22:06:11 -04:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
R. RyanTM b9137d6bce openlibm: 0.5.5 -> 0.6.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/openlibm/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.6.0 with grep in /nix/store/crnh2jiksr0b3sq5v6fc9x7zrrsjgirg-openlibm-0.6.0
- directory tree listing: https://gist.github.com/c287196625881e2d6c72af761704718e
- du listing: https://gist.github.com/ac9a45900fb2ba4ff48120c343677dec
2018-06-23 18:48:17 -07:00
R. RyanTM 12a554dc31 brial: 1.2.3 -> 1.2.4
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/brial/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.2.4 with grep in /nix/store/d80z046q8l3rhi7zwbcxzaydfrqxvzq9-brial-1.2.4
- directory tree listing: https://gist.github.com/73a4fe4d778faacdf1c17f40a83e3884
- du listing: https://gist.github.com/23202c35b020ea0976f7c4ff9e23ca2c
2018-06-19 16:52:22 -07:00
Vladimír Čunát 31530c185e
Merge a subset of staging (security)
In particular, this contains Firefox-related and libgcrypt updates.
Other larger rebuilds would apparently need lots of time to catch up
on Hydra, due to nontrivial rebuilds in other branches than staging.
2018-06-15 08:48:02 +02:00
R. RyanTM cc9fc2bdcd ipopt: 3.12.9 -> 3.12.10 (#41555)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ipopt/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 3.12.10 with grep in /nix/store/6748l35g9dz7z77wqwal99ylrhn87liv-ipopt-3.12.10
- directory tree listing: https://gist.github.com/5da4bb4853af0913caca26e8cbc87666
- du listing: https://gist.github.com/c4d8373c7d9a61f39479151fdffa99cb
2018-06-09 23:33:17 +02:00
Will Dietz 912b58a2c1 openblas: workaround mass-rebuilds
Thanks for the suggestion:
https://github.com/NixOS/nixpkgs/pull/41639#issuecomment-395509669
2018-06-07 13:38:08 -05:00
Will Dietz b1d54822e4 openblas: remove patch that's no longer needed (PR merged) 2018-06-07 12:20:08 -05:00
Frederik Rietdijk 4dc7cc8cc7
Merge pull request #41259 from jyp/tf-1.7.1-bin
python.pkgs.tensorflow: wheel version
2018-06-07 11:27:39 +02:00
R. RyanTM 9d1d274928 openblas: 0.2.20 -> 0.3.0 (#41054) 2018-06-03 13:23:38 +00:00
Jean-Philippe Bernardy 397c4b7748 cudatoolkit: add 9.0
This version is a dependency of tensorflow binaries
2018-05-31 22:21:54 +02:00
Jean-Philippe Bernardy 9e730ee254 renaming cudatoolkit version numbers 2018-05-31 22:21:53 +02:00
Orivej Desh 0159beb89c ns-3: fix build after #28029 2018-05-30 02:37:40 +00:00
Ben Darwin 7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Robert Schütz 6e6005c2af
Merge pull request #38794 from timokau/brial-init
brial: init at 1.2.3
2018-05-08 08:08:15 +02:00
Timo Kaufmann 8b5ecf9141 brial: init at 1.2.3 2018-05-08 01:27:35 +02:00
Timo Kaufmann ca9ea31ae1 liblapack: 3.4.1 -> 3.8.0 2018-05-06 21:12:01 +02:00
Matthew Justin Bauer 8e6684ca32
Merge pull request #39795 from r-ryantm/auto-update/atlas
atlas: 3.10.2 -> 3.10.3
2018-05-04 17:18:23 -05:00
R. RyanTM 24761ef5d4 atlas: 3.10.2 -> 3.10.3
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/atlas/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/bgqampvgm3zdncg3206n7qnvyvl0jipj-atlas-3.10.3
- directory tree listing: https://gist.github.com/a7dd287df10b13796423e3c2df0850eb
2018-04-30 23:08:21 -07:00
Timo Kaufmann a0076a4fb6 rubiks: fix build 2018-04-27 17:53:58 +02:00
Daiderd Jordan bae15c811f
sympow: don't use placeholder 2018-04-26 22:50:36 +02:00
Matthew Justin Bauer 7ebb6212a2
Merge pull request #38805 from timokau/zn_poly-init
zn_poly: init at 0.9
2018-04-24 09:28:27 -05:00
Timo Kaufmann 28c023e246 zn_poly: init at 0.9 2018-04-22 20:44:06 +02:00
Timo Kaufmann 0c9aaf0814 rankwidth: init at 0.7 2018-04-22 20:11:49 +02:00
Timo Kaufmann b74e884aab flintqs: init at 1.0 2018-04-21 20:43:56 -05:00
Timo Kaufmann d0d7894f75 rubiks: init at 20070917 2018-04-21 20:42:58 -05:00
Timo Kaufmann 10124a4743 lcalc: init at 1.23 (#38796) 2018-04-21 20:38:40 -05:00
Jörg Thalheim f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim 38d6decac3
Merge pull request #38804 from timokau/sympow-init
sympow: init at 1.018.1
2018-04-21 19:46:59 +01:00
Timo Kaufmann f8fbe0f157 sympow: init at 1.018.1 2018-04-20 10:28:44 +02:00
Timo Kaufmann d8e5160b23 planarity: init at 3.0.0.5 (#38800) 2018-04-19 08:43:44 +02:00
Jörg Thalheim be5ad658df
Merge pull request #38971 from knedlsepp/fix-darwin-gpu-stuff
Fix clblas and libgpuarray on darwin
2018-04-17 13:58:54 +01:00
Josef Kemetmüller 357d8f600c clblas: Enable darwin build 2018-04-15 12:12:25 +02:00
Robert Schütz 089eefe724
Merge pull request #38795 from timokau/cliquer-init
cliquer: init at 1.21
2018-04-14 17:41:11 +02:00
Timo Kaufmann 2c23faa3d8 cliquer: init at 1.21 2018-04-14 10:33:54 +02:00
Timo Kaufmann 7d625f6c08 m4rie: init at 20150908 2018-04-12 13:40:27 +02:00
Robert Schütz 077bf8de4c
Merge pull request #38762 from timokau/m4ri-init
m4ri: init at 20140914
2018-04-12 13:26:52 +02:00
Timo Kaufmann 280b421cbb m4ri: init at 20140914 2018-04-12 13:24:20 +02:00
Ben Darwin 1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin 12fa2f9fd3 metadata fixes: EBTKS, MNI::Perllib, Text::Format 2018-04-10 00:53:55 -04:00
Ben Darwin c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin d094f52112 fix EBTKS version naming 2018-04-09 18:07:15 -04:00
Ben Darwin c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin e7d447ce2c EBTKS: init at 1.6.50 (develop branch) 2018-04-09 18:06:33 -04:00
Frederik Rietdijk 595a72589f Merge master into staging 2018-04-08 10:54:17 +02:00
Matthieu Coudron 863c2908f2 ns-3: init at 28.0
ns-3 is a discrete event C++ network simulator developed at www.nsnam.org .

Python bindings & manual building are disabled by default but you can
override it.
2018-04-06 13:54:20 +09:00
Daiderd Jordan a378141684
caffe2: mark linux only 2018-04-05 20:05:18 +02:00
Tuomas Tynkkynen 747ebe3f66 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/top-level/all-packages.nix
2018-04-03 02:22:54 +03:00
Ryan Mulligan 85afb4e1e6 petsc: 3.8.3 -> 3.8.4
Semi-automatic update generated by https://github.com/ryantm/nix-update tools.

This update was made based on information from https://repology.org/metapackage/petsc/versions.

These checks were done:

- built on NixOS
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -V` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -v` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py help` got 0 exit code
- found 3.8.4 with grep in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- found 3.8.4 in filename of file in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- directory tree listing: https://gist.github.com/da90b8c44c7ed274deb2e1a2c7de8dad
2018-03-28 00:48:35 -07:00
Shea Levy d0a8866622
Merge branch 'binutils-2.30' into staging 2018-03-22 07:28:10 -04:00
Shea Levy 5ce31aa6b7
Revert "atlas: 3.10.2 -> 3.10.3"
3.10.3 segfaults with glibc 2.27, and since it was fairly recently
added via autoupdate hopefully it's not too strongly needed yet.

This reverts commit 4c28d80be2.
2018-03-20 17:21:20 -04:00
Will Dietz 161253f0e0
Merge pull request #37047 from dtzWill/fix/openblas-numpy-musl
openblas, numpy: fix w/musl
2018-03-19 13:39:24 -05:00
Ryan Mulligan 4c28d80be2 atlas: 3.10.2 -> 3.10.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/79z1zd6ydm6b7x6xbf8b908iirah8hqn-atlas-3.10.3
2018-03-16 01:31:41 -07:00
Will Dietz 837538da43 openblas: don't build w/openmp on musl 2018-03-15 18:27:22 -05:00
Joachim F 6ae3aa1560
Merge pull request #36640 from ryantm/auto-update/openlibm
openlibm: 0.5.4 -> 0.5.5
2018-03-14 21:13:44 +00:00
Josef Kemetmüller edef344458 petsc: fix darwin build 2018-03-12 00:20:18 +01:00
Yuri Aisaka e559fa19f3 fix compilation on gcc7 2018-03-09 22:34:25 +09:00
Ryan Mulligan 724667fa3f openlibm: 0.5.4 -> 0.5.5
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 0.5.5 with grep in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
- found 0.5.5 in filename of file in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
2018-03-09 05:10:28 -08:00
Ryan Mulligan 1aa5bb44ca blas: 3.7.1 -> 3.8.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 3.8.0 in filename of file in /nix/store/6j28cb5b114fxj7x7wpwv8mdbiqxq1fj-blas-3.8.0
2018-03-04 18:51:48 +00:00
Anders Kaseorg 6f073154da Give working advice for running nix-prefetch-url
nix-prefetch-url file://… requires a full path.  Suggest an invocation
that will provide one.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2018-03-04 17:28:36 +00:00
Ryan Mulligan 6eecefbfbe petsc: 3.7.6 -> 3.8.3
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -V` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -v` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` and found version 3.8.3
- found 3.8.3 with grep in /nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3
2018-03-03 11:03:57 +00:00
Ryan Mulligan d3a20a674c openspecfun: 0.4 -> 0.5.3
Semi-automatic update. These checks were performed:

- built on NixOS
- found 0.5.3 in filename of file in /nix/store/yqsgs9hw8c3rdia75rswgk98lz3c52ih-openspecfun-0.5.3

cc "@ttuegel"
2018-02-27 09:02:15 -08:00
Nikolay Amiantov 41abde91ce nccl: 1.2.4-1 -> 2.1.4
It's closed source now.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov e77d2106bf ipopt: 3.12.8 -> 3.12.9 2018-02-25 22:24:09 +03:00
Nikolay Amiantov efe836160f cudatoolkit: 9.0.176 -> 9.1.85.1 2018-02-25 22:24:09 +03:00
Yuri Aisaka f8c48908f7 caffe2: init at 0.8.1 (#34956) 2018-02-16 15:09:40 +00:00
Will Dietz 8dfe068f86 openblas: patch to fix on non-glibc 2018-02-13 09:44:48 -06:00
Will Dietz c8081971f4 openblas: NO_AFFINITY=1 fix for musl 2018-02-13 09:44:48 -06:00
Renato Alves b2284e0454
htslib: 1.6 -> 1.7 2018-02-06 15:37:50 +01:00
Markus Kowalewski a16880533f arpack: remove FFLAGS 2018-01-22 15:52:57 -08:00
Markus Kowalewski eb30d65de6 arpack: 3.3.0 -> 3.5.0 2018-01-22 15:36:43 -08:00
Tuomas Tynkkynen 722295fc15 openblas: Support ARMv6 2017-12-30 00:19:57 +02:00
hyphon81 05573d3e06
nccl: init at 1.3.4-1 2017-12-28 17:46:52 +01:00
Orivej Desh 4de81540df
Merge pull request #32427 from TravisWhitaker/cudnn
cuDNN 7.0.3 -> 7.0.5
2017-12-17 04:25:42 +00:00
georgewhewell 73b65551f4 openblas: add aarch64 platform config 2017-12-11 19:22:07 +02:00
Travis Whitaker 777c9bfdae cuDNN 7.0.3 -> 7.0.5 2017-12-07 15:13:07 -08:00
Orivej Desh 45cf0b0da4 fenics: restrict to Darwin
It has never been building on Linux.
2017-12-01 07:17:15 +00:00
Orivej Desh 4d50d79bc8 atlas: disable parallel building 2017-11-22 06:49:21 +00:00
Orivej Desh d5e3935a6a atlas: enable parallel building 2017-11-21 19:29:10 +00:00
Nikolay Amiantov 77046bed8a cudnn7: 7.0 -> 7.0.3 2017-10-28 17:39:59 +03:00
Nikolay Amiantov 50a223b144 clblas: 20160505 -> 2.12 2017-10-19 12:47:30 +03:00
Nikolay Amiantov 6309e5fa01 cudnn: refactor to use shared derivation
Also return 8.0-6.0 version for TensorFlow.
2017-10-19 12:47:30 +03:00
Nikolay Amiantov ce9059a120 cudnn_cudatoolkit9: init at 7.0
Make it the default.
2017-10-19 12:47:30 +03:00
Orivej Desh 047c576353 Merge pull request #29963 from mimadrid/update/samtools-1.6.0
samtools: 1.5.0 -> 1.6.0
2017-10-02 01:07:11 +00:00
Orivej Desh 0acf94bb9f htslib: fix up 2017-10-01 07:12:52 +00:00
mimadrid 25b17ae1d7
htslib: 1.5.0 -> 1.6.0 2017-09-30 22:14:49 +02:00
Nikolay Amiantov 098c6825e0 blas: 3.5.0 -> 3.7.1 2017-09-25 22:46:44 +03:00
Jörg Thalheim aab8f8df4b nifticlib: use mirror for sourceforge 2017-09-21 09:10:12 +01:00
Ben Darwin 0d981c5761 nifticlib: init at 2.0.0 2017-09-20 19:04:22 -04:00
John Ericson 8fccaa284d Merge pull request #29282 from obsidiansystems/soext
lib, treewide: Add `*Platform.extensions` and use it where possible
2017-09-13 11:20:06 -04:00
John Ericson 5aec3f96a2 treewide: Use *Platform.extensions 2017-09-13 11:16:10 -04:00
Jean-Philippe Bernardy 1ba197f225 make my maintainer handle match my github username 2017-09-12 15:17:18 +02:00
Jean-Philippe Bernardy d51bd36646 cudnn: add 6.0 2017-09-07 09:28:03 +02:00
jamtrott c8c0cd4d6c petsc: init at 3.7.6 (#28368)
* petsc: init at 3.7.6

* petsc: use configureFlagsArray

* petsc: Remove unneeded binaries
2017-09-03 17:11:16 +01:00
James D. Trotter 518fb60797 fenics: init at 2017.1.0 2017-08-15 16:19:45 +02:00
Frederik Rietdijk b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0
samtools: 1.4.0 -> 1.5.0
2017-08-13 22:32:48 +02:00
mimadrid 302e7825fa
htslib: 1.4.0 -> 1.5.0 2017-08-13 00:16:42 +02:00
mimadrid 09e0cc7cc7
Update homepage attributes: http -> https
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
2017-08-03 11:56:15 +02:00
Silvan Mosberger f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809)
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
2017-08-01 22:03:30 +02:00
Frederik Rietdijk ec59e3b3f5 openblas: 0.2.19 -> 0.2.20 2017-07-28 18:08:06 +02:00
Nikolay Amiantov 5fdc1e763f ipopt: 3.12.6 -> 2.12.8 2017-07-27 17:07:44 +03:00
Ben Darwin d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Tyson Whitehead 8fdbc828b9
clblas-cuda: requires ocl-icd now for libOpenCL.so.1 #25902 2017-05-18 18:32:09 -04:00
Jörg Thalheim be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4
Update/htslib 1.4
2017-05-11 07:08:56 +01:00
mimadrid 295a23a2db
htslib: 1.3.2 -> 1.4 2017-05-07 23:15:42 +02:00
Daiderd Jordan f240276000
blas: fix darwin library id 2017-04-27 23:25:07 +02:00
Vladimír Čunát 6617c8bd87
A fixed version of commit eb750f9a7b
For detailed explanation see:
https://github.com/NixOS/nixpkgs/commit/24444513fb5#commitcomment-21767916
2017-04-14 18:59:36 +02:00
Joachim Fasting 540a6412e3
suitesparse_4_4: NIX_CFLAGS -> NIX_CFLAGS_COMPILE
Tested with nix-build -A suitesparse_4_4
2017-04-12 19:27:03 +02:00
Joachim Fasting a883581ddb
suitesparse_4_2: remove bogus NIX_CFLAGS
NIX_CFLAGS should be NIX_CFLAGS_COMPILE; since pic is the default, we
simply remove the bogus declaration.

Tested with nix-build -A suitesparse_4_2
2017-04-12 19:26:58 +02:00
Frederik Rietdijk 767e459200 Merge pull request #22726 from matthewbauer/openblas-closure-size
openblas: disable static libs
2017-04-10 16:11:19 +02:00
Matthew Daiter d712c04d25 suitesparse: refining CUDA support 2017-04-04 17:23:20 +02:00
Matthew Daiter 6f721ce534 suitesparse: add CUDA support 2017-03-29 15:47:51 +02:00
Matthew Bauer bd8654f45d openblas: disable static libs
Disable static on openblas. This should save about 57M from closure sizes.
2017-02-12 18:45:44 -06:00
Matthew Daiter 82835f7eb3 cudnn51_cudatoolkit80: hash change 2017-02-08 18:40:32 +01:00
Anthony Cowley 084a76ef6f atlas: change platforms to unix
The build succeeds on darwin and linux.
2017-01-10 21:02:04 -05:00
Robert Helgesson 2990cd8aea
clblas-cuda: use system gtest library
Without this the build attempts to download the library.
2016-12-28 12:21:07 +01:00
mimadrid 25c984f940
htslib: 1.3.1 -> 1.3.2 2016-12-23 19:31:44 -05:00
Thomas Tuegel bed668c051
openblas: refactor and set TARGET always 2016-12-10 16:49:45 -06:00
Nikolay Amiantov be95ceaff2 treewide: quote URLs in my packages 2016-11-24 01:17:52 +03:00
Matthew Daiter 3897b344f3 cudnn51_cudatoolkit80: Init at 5.1-8.0 2016-11-21 14:51:39 +01:00
Falco Peijnenburg 5f5f0614b0 Support for ARM in openblas
Attempting to build openblas on ARM resulted in the error "unsopported system: armv7l_linux". This PR resolves that issue and some other issues that pop up when trying to build openblas for ARM.
2016-11-18 12:44:49 +01:00
Matthew Daiter 541b3fc7d2 cudnn5_cudatoolkit80: adding to main repo 2016-11-07 12:07:29 +01:00
Daiderd Jordan 3187b01720 Merge pull request #19816 from veprbl/octave_fixes
octave: darwin fix
2016-11-05 10:49:33 +01:00
Frederik Rietdijk 7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Dmitry Kalinkin a8eb57d953
openblas: silence warnings on darwin
Without this one gets a lot of build time warnings like:

ld: warning: object file (/tmp/strip.2OzFn8) was built for newer OSX
version (10.9) than being linked (10.7)
2016-10-23 21:19:14 -04:00
Thomas Tuegel a58ec829e4
openblas: disable some hardening flags 2016-10-22 12:57:40 -05:00
Frederik Rietdijk 9b66b5c2cc liblapack: use python2 2016-10-18 23:16:05 +02:00
Thomas Tuegel d94abcb157
openblas: 0.2.17 -> 0.2.19 2016-09-09 19:42:54 -05:00
Michael Raskin 6b075ee8b1 openlibm: 0.4.1 -> 0.5.4 2016-09-06 19:31:38 +02:00
obadz 0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen a18ee4acb7 treewide: Make explicit that 'dev' output of boost is used
Also fix one incorrect output in geant.
2016-08-23 04:32:21 +03:00
Tuomas Tynkkynen d3705faa56 treewide: Use makeLibraryPath in LD_LIBRARY_PATHs 2016-08-23 00:14:00 +03:00
Robin Gloster 33e1c78ae3 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-16 07:54:01 +00:00
Nikolay Amiantov 0464600859 ipopt: 3.12.4 -> 3.12.6 2016-08-14 22:37:08 +03:00
Robin Gloster 1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen 21f17d69f6 treewide: Add lots of meta.platforms
Build-tested on x86_64 Linux & Mac.
2016-08-02 21:42:43 +03:00
Robin Gloster 1f04b4a566 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-21 00:56:43 +00:00
Josef Kemetmueller f3dc4d9ec3 superlu: init at 5.2.1 2016-07-19 12:37:08 +00:00
Franz Pletz f597e97236 atlas: Fix hardening 2016-07-13 19:30:52 +02:00
Franz Pletz 26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Joachim Fasting 46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1
bcftools: init at 1.3.1
2016-06-24 22:15:51 +02:00
mimadrid d3da5cbf44
htslib: init at 1.3.1 2016-06-24 21:08:16 +02:00
artuuge 465d6a2113 Theano-cuda: init at 0.8.2 2016-06-20 01:06:07 +02:00
Robin Gloster 8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
artuuge 5b51f0bff9 clblas-cuda: init at git-20160505 2016-06-05 14:33:19 +02:00
Ian-Woo Kim ff8985e7ab cudnn: add cudatoolkit to propagatedBuildInputs 2016-06-02 19:33:03 +02:00
Robin Gloster 2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Arseniy Seroka c6b3aca4e2 Merge pull request #15654 from wavewave/magma
magma: init at 2.0.2
2016-05-26 01:02:14 +03:00
Ian-Woo Kim e47070ad64 cudnn: init at 4.0 2016-05-25 18:26:57 +00:00
Ian-Woo Kim fd42fccd4c magma: init at 2.0.2 2016-05-25 18:14:41 +00:00
Franz Pletz f8d481754c
Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-05-18 17:10:02 +02:00
Peter Simons 8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Evgeny Egorochkin 4b979eef29 atlas: put the name suffix where it belongs 2016-05-16 10:19:38 +03:00
Robin Gloster d020caa5b2 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-18 13:49:22 +00:00
= 9ec9da1a24 iSpike: init at 2.1.1 2016-04-12 14:36:20 +02:00
Robin Gloster 696d85a62d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-03 11:01:57 +00:00
Frederik Rietdijk 4bd01c5cbd openblas_2_14: remove
because we don't need it for numpy anymore.
2016-03-31 21:51:45 +02:00
Franz Pletz 2e08d8234e Merge remote-tracking branch 'origin/master' 2016-03-31 10:06:30 +02:00
Frederik Rietdijk c1abb1d404 openblas: 0.2.15 -> 0.2.17 2016-03-28 15:58:10 +02:00
Robin Gloster 3f45f0948d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-15 01:44:24 +00:00