Commit graph

1350 commits

Author SHA1 Message Date
Gabriel Ebner acf01cbc6c lean2: 2016-11-29 -> 2017-07-22
This will also fix the build issues with GCC 6.
2017-08-19 15:24:35 +02:00
Maximilian Bosch 319dac82d1
geogebra: fallback to web.archive.org 2017-08-18 21:42:50 +02:00
Maximilian Bosch 242d950ab3
geogebra: 5-0-377-0 -> 5-0-382-0 2017-08-18 21:40:58 +02:00
Ryan Bernstein 749e702a46 poretools: version number to commit date 2017-08-18 09:59:26 -04:00
Matthew Bauer b3d8c08a55 acgtk: fix homepage url 2017-08-17 15:04:37 -07:00
Matthew Bauer 59c5f52f67 caneda: use caneda.org for homepage 2017-08-17 15:04:37 -07:00
Matthew Bauer 99c868c010 use https://github.com for all homepages
GitHub does a redirect to https:// when you use http://

repology complains with:

“Homepage link "https://github.com/…" is dead (HTTP error 404) for more than a month.”

This will fix some of them (not all though)
2017-08-17 14:53:40 -07:00
Ryan Bernstein a13e4ad1f5 poretools: init at 0.6.0 2017-08-17 11:17:30 -04:00
Frederik Rietdijk 006edcc316 Merge pull request #27440 from mnacamura/mathematica11_fix_ldpath
mathematica: fix library paths
2017-08-13 22:55:18 +02:00
Frederik Rietdijk b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0
samtools: 1.4.0 -> 1.5.0
2017-08-13 22:32:48 +02:00
Frederik Rietdijk 3f642af583 Merge pull request #28062 from lsix/update_motu-client
motu-client: 1.0.8 -> 1.4.0
2017-08-13 22:08:54 +02:00
Frederik Rietdijk 6e386925ac Merge pull request #28229 from jpierre03/pr-alt-ergo
alt-ergo: use https instead of http to fetch archive
2017-08-13 22:01:59 +02:00
Frederik Rietdijk 13bbaee21d Merge pull request #27881 from mimadrid/fix/http-https
Update homepage attributes: http -> https
2017-08-13 21:53:20 +02:00
Frederik Rietdijk 7ebcd39a0f Merge commit '4c49205' into HEAD 2017-08-13 18:34:59 +02:00
Jean-Pierre PRUNARET 184d2e7977 alt-ergo: use https instead of http to fetch archive 2017-08-13 13:26:30 +02:00
mimadrid 15a99ae367
bcftools: 1.4.0 -> 1.5.0 2017-08-13 00:17:48 +02:00
mimadrid ca45a26ec3
samtools: 1.4.0 -> 1.5.0 2017-08-13 00:17:25 +02:00
Will Dietz fbb6b90ed0 yices: 2.5.1 -> 2.5.2 2017-08-12 13:02:33 -05:00
pe@pijul.org 443ac23336 Gwyddion: init at 2.48 2017-08-11 20:30:11 +02:00
Lancelot SIX 38f3153caa
motu-client: 1.0.8 -> 1.4.0 2017-08-09 10:08:14 +02:00
davidak 3270aa896b replace "Mac OS X" and "OS X" with "macOS"
as it is the official name since 2016

https://en.wikipedia.org/wiki/Macintosh_operating_systems#Desktop

exception are parts refering to older versions of macOS like

"GUI support for Mac OS X 10.6 - 10.12. Note that Emacs 23 and later [...]"
2017-08-07 21:41:30 +02:00
Vincent Laporte eb7312ca7d maxima: 5.39.0 -> 5.40.0 2017-08-05 10:48:50 +02:00
Théo Zimmermann 057ffcf0dd coq: adding myself to the maintainers 2017-08-04 19:52:55 +02:00
Théo Zimmermann b25d65e051 coq: use camlp5_strict
The versions of Coq available through this expression do not actually
require camlp5_transitional. We drop this dependency to see if, in the
future, the package camlp5_transitional can be removed from nixpkgs.
2017-08-04 19:52:54 +02:00
Théo Zimmermann c0dca2fb00 coq: 8.6 -> 8.6.1 2017-08-04 19:52:51 +02:00
mimadrid 09e0cc7cc7
Update homepage attributes: http -> https
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
2017-08-03 11:56:15 +02:00
Silvan Mosberger f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809)
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
2017-08-01 22:03:30 +02:00
Frederik Rietdijk 3ed7975b65 Merge pull request #27844 from mimadrid/update/igv-2.3.98
igv: 2.3.89 -> 2.3.98
2017-08-01 21:52:33 +02:00
Frederik Rietdijk d1af3b33aa Merge pull request #27006 from Infinisil/scyther
scyther: init at 1.1.3
2017-08-01 21:48:47 +02:00
mimadrid 20fb18bdbc
igv: 2.3.89 -> 2.3.98 2017-08-01 20:46:31 +02:00
John Wiegley ea8798acc6
coq2html: New expression 2017-08-01 09:30:20 -07:00
Frederik Rietdijk 903d9daf0f Merge pull request #27816 from mimadrid/update/calc-2.12.6.1
calc: 2.12.5.3 -> 2.12.6.1
2017-08-01 09:19:29 +02:00
mimadrid eaf1198f39
calc: 2.12.5.3 -> 2.12.6.1 2017-07-31 23:27:29 +02:00
Gabriel Ebner b94da10c27 libqalculate, qalculate-gtk: 0.9.9 -> 1.0.0 2017-07-31 16:29:39 +01:00
Franz Pletz 5d2f5e374f
verilator: build with current flex 2017-07-29 19:51:16 +02:00
Maximilian Bosch 02ceec5343 geogebra: 5-0-369-0 -> 5-0-377-0 2017-07-26 23:06:30 +02:00
Peter Hoeg 45248be2aa cryptominisat: use new xxd package instead of vim 2017-07-24 09:37:58 +08:00
Silvan Mosberger 313b8b7e4b scyther: Separated into two derivations 2017-07-23 03:17:38 +02:00
Franz Pletz e69dfc252a
Revert "coq2html: New expression"
This reverts commit 31437ccf7a.
2017-07-20 19:36:50 +02:00
John Wiegley 31437ccf7a
coq2html: New expression 2017-07-20 11:51:25 -04:00
Mitsuhiro Nakamura fb2302e115 Add missing 'math' 2017-07-19 17:39:36 +09:00
Mitsuhiro Nakamura 7aaea7297e Simplify the sed script 2017-07-19 15:18:44 +09:00
Jörg Thalheim 699f8e2f65 Merge pull request #26352 from Mounium/aliza
aliza: init at 1.29.2
2017-07-19 07:03:01 +01:00
Jörg Thalheim d945e3ccc4 Merge pull request #27366 from veprbl/version_bumps
bump rivet, yoda, lhapdf
2017-07-18 23:38:53 +01:00
Symphorien Gibol d7103eadc8 boolector: 1.{5,6} -> 2.4.1 2017-07-18 23:50:31 +02:00
Mitsuhiro Nakamura 488db3d392 mathematica: fix library paths 2017-07-18 19:45:43 +09:00
Gabriel Ebner 7ba1c7a9fb iprover: 0.8.1 -> 2.5 2017-07-17 22:45:27 +01:00
Silvan Mosberger 75fde4130d scyther: init at 1.1.3 2017-07-16 23:38:05 +02:00
Vladimír Čunát 371ad29661
abc-verifier: fix typo in meta 2017-07-15 09:27:41 +02:00
Dmitry Kalinkin 459e3864d2
root: 6.10.00 -> 6.10.02 2017-07-14 04:40:27 -04:00
Vincent Laporte 8bafd3aaa4 ginac: 1.6.2 -> 1.7.2 2017-07-13 19:35:06 +02:00
Michael Raskin dcbe96d260 Merge pull request #27197 from kquick/master
yices library: enable full functionality by adding libpoly polynomial library and fix soname linking.
2017-07-08 22:37:12 +02:00
Vincent Laporte eb2be6d97e acgtk: 1.1 -> 1.3.1 2017-07-08 08:52:02 +02:00
Vincent Laporte 43b2b55743 hol_light: 2016-07-23 -> 2017-07-06 2017-07-08 06:14:43 +00:00
Kevin Quick 6cbd9ce8f9 Fix license reference for added libpoly library. 2017-07-07 12:54:32 -07:00
Kevin Quick 6387a7ec8b Update yices to add libpoly/mcsat functionality and add soname target. 2017-07-06 21:31:38 -07:00
Kevin Quick 8ff05c85ee Add poly library for manipulating polynomials. 2017-07-06 21:30:30 -07:00
Katona László b86eb39a58 aliza: 1.28.10->1.29.2 2017-07-02 23:39:08 +02:00
Peter Simons 4c5577b504 R: update to version 3.4.1 2017-06-30 13:37:26 +02:00
Shea Levy 24c59a4452 neuron: enable GUI 2017-06-28 11:59:54 -04:00
Maximilian Bosch 9516bbf172
geogebra: make language configurable 2017-06-27 09:51:06 +02:00
Vincent Laporte ac83ef3994 glsurf: 3.3 -> 3.3.1 2017-06-26 19:24:33 +02:00
Joachim F 90d3a0314c Merge pull request #26836 from Ma27/update/geogebra
geogebra: 5-0-361-0 -> 5-0-369-0
2017-06-25 16:35:13 +01:00
Maximilian Bosch f5665e9ab4
geogebra: 5-0-361-0 -> 5-0-369-0 2017-06-25 12:39:30 +02:00
Jörg Thalheim ad42e5f6e5 Merge pull request #26795 from veprbl/root_6.10.00
root: 6.09.02 -> 6.10.00
2017-06-25 09:14:30 +01:00
Dmitry Kalinkin ada12f46dc
root: 6.09.02 -> 6.10.00
also workaround #26197
2017-06-24 13:38:25 -04:00
Frederik Rietdijk 4f0d812abc python.pkgs.spyder: remove maintainers
since we both do not use this package anymore.
cc @bjornfor
2017-06-23 10:44:42 +02:00
Franz Pletz b6cf652e08
boinc: 7.4.42 -> 7.8.0 2017-06-20 05:19:31 +02:00
Gabriel Ebner 89e02c7516 lean: 3.1.0 -> 3.2.0 2017-06-18 20:04:30 +02:00
Thomas Tuegel c816bbc8a8
qt5: remove makeQtWrapper 2017-06-18 08:44:42 -05:00
Thomas Tuegel 210f688802
qt5: rename qmakeHook to qmake 2017-06-18 08:41:57 -05:00
Thomas Tuegel 3f3d33a078
qt5: use distinct lib/qt-5.x prefix for each minor version
Using a distinct prefix for plugins and QML libraries allows multiple Qt 5 minor
versions to coexist in the same environment.
2017-06-18 08:41:57 -05:00
Katona László 5e528db0d9 aliza: init at 1.28.10 2017-06-15 19:53:01 +02:00
Justin Bedo 94ec54598c
snpeff: 4.3i -> 4.3p 2017-06-13 15:31:52 +10:00
Jörg Thalheim c972f01e2d
pymol: set PYTHONPATH in a future way 2017-06-02 21:55:16 +01:00
Katona László 2a1c535b7e pymol: added Pmw + python version bump 2017-06-02 19:58:00 +02:00
Maximilian Bosch 47e8665595
geogebra: 5-0-355-0 -> 5-0-361-0 2017-05-30 06:35:33 +02:00
Dan Peebles 594829ddfc msieve: update and enable on Darwin 2017-05-26 18:18:39 -04:00
Dan Peebles 1df505fc36 ecm: enable on Darwin 2017-05-26 18:14:31 -04:00
Vladimír Čunát 8004e79415
Merge branch 'master' into staging 2017-05-24 03:24:06 +02:00
Samuel Leathers fdbcee03fe minisat: fix maintainer 2017-05-22 23:55:05 -04:00
Jörg Thalheim 2549be898d
stp: 2014.01.07 -> 2.2.0 2017-05-22 22:25:45 +01:00
Jörg Thalheim 893c7b6112
cryptominisat: init at 5.0.1 2017-05-22 22:25:14 +01:00
Jörg Thalheim 7786922240
minisatUnstable: init at 2013-09-25 2017-05-22 22:24:58 +01:00
Frederik Rietdijk 99cfab07b9 Merge remote-tracking branch 'upstream/master' into HEAD 2017-05-22 09:21:40 +02:00
Shea Levy b1b61d0988 coq: nix-buffer: Inherit variables to PG shell 2017-05-22 00:45:54 -04:00
Jörg Thalheim ea706bd98b Merge pull request #25231 from veprbl/root_6.09.02
root: 6.08.02 -> 6.09.02
2017-05-20 17:37:43 +01:00
Joachim Fasting 874b81b31f
treewide: s,enableParallelBuild(s),enableParallelBuilding,g 2017-05-20 17:16:17 +02:00
marcnnn e46ca1b95f cvc4: 1.5pre-smtcomp2016 -> unstable-2017-05-18 (#25808)
* cvc4: 1.5pre-smtcomp2016 -> 1.5pre-20170514

* cvc4: use stable url

upstream delete their tarballs
2017-05-20 14:00:39 +01:00
Shea Levy b21540c4a6 coq: Add emacs buffer setup 2017-05-20 08:34:33 -04:00
Vladimír Čunát 65ede052fa
treewide: fixup packages with RPATH problems 2017-05-16 18:30:58 +02:00
Matthew Daiter 093130f802 openmvs: init at current master (#25672)
* openmvs: init at current master

* openmvs: simplify expression

* openmvs: init at unstable-2017-05-01
2017-05-12 20:07:11 +01:00
Jörg Thalheim be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4
Update/htslib 1.4
2017-05-11 07:08:56 +01:00
mimadrid 8d1bebf83c
bcftools: 1.3.1 -> 1.4 2017-05-11 07:04:33 +01:00
Peter Hoeg 32b57bec77 Merge pull request #25588 from mimadrid/update/weka-3.8.1
weka: 3.8.0 -> 3.8.1
2017-05-09 17:39:05 +08:00
mdaiter fdd28b6fe0
openmvg: clarify Git version
fixes #25615
2017-05-09 09:39:41 +01:00
Frederik Rietdijk 183cada05a Merge pull request #25590 from mimadrid/update/cytoscape-3.5.1
cytoscape: 3.4.0 -> 3.5.1
2017-05-09 10:03:20 +02:00
mimadrid 9073e67568
samtools: 1.3.1 -> 1.4 2017-05-07 23:15:48 +02:00
mimadrid 0ed5b1c867
cytoscape: 3.4.0 -> 3.5.1 2017-05-07 23:05:59 +02:00
mimadrid bfc3d976f3
weka: 3.8.0 -> 3.8.1 2017-05-07 22:54:09 +02:00