Commit graph

2581 commits

Author SHA1 Message Date
Vladimír Čunát f7ddff5c6d
R: fix regression from commit cbade453 #58989
Normally the directory is created in fixup phase.
2019-04-07 17:38:45 +02:00
rhokue cbade453ac R: explicitly declare which as a run-time dependency
Fixes https://github.com/NixOS/nixpkgs/issues/58963.
Closes https://github.com/NixOS/nixpkgs/pull/58989.
2019-04-07 11:12:43 +02:00
Timo Kaufmann ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 (#59085) 2019-04-06 21:46:13 +00:00
Pascal Wittmann cfb6ade58c
Merge pull request #58931 from bzizou/migrate
migrate: init at 3.7.2
2019-04-06 14:23:50 +02:00
Vincent Laporte 50a03f8632 hol_light: 2018-09-30 -> 2019-03-27 2019-04-06 11:03:29 +02:00
Timo Kaufmann 6662fbc822
Merge pull request #58961 from timokau/nauty-features
nauty: disable cpu feature detection
2019-04-05 13:12:05 +00:00
Bruno Bzeznik 0b03f44c2f migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
Timo Kaufmann 7f22a42976 nauty: disable cpu feature detection 2019-04-04 14:54:55 +02:00
Timo Kaufmann 15045e6233 nauty: add timokau as a maintainer
I'm interested in this package as a sage dependency.
2019-04-04 14:54:31 +02:00
Timo Kaufmann 5880c449dd nauty: small refactoring 2019-04-04 14:54:05 +02:00
R. RyanTM 9f68f2a7dc verilator: 4.010 -> 4.012
Semi-automatic update generated by
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based on information from
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2019-04-03 13:43:11 -05:00
markuskowa e2ce5fd7fe
Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso
quantum-espresso: 6.3 -> 6.4
2019-04-03 15:42:40 +02:00
Markus Kowalewski c109aaa5cb
quantum-espresso: remove outdated makefile fix 2019-04-03 15:00:17 +02:00
markuskowa 126e1f8fd0
Merge pull request #58538 from bzizou/stacks
stacks: init at 2.3e
2019-04-03 14:41:00 +02:00
Bruno Bzeznik e7899d2a00 stacks: init at 2.3e 2019-04-03 14:01:32 +02:00
R. RyanTM 882247fc3f quantum-espresso: 6.3 -> 6.4
Semi-automatic update generated by
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based on information from
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2019-04-02 15:30:36 -07:00
Timo Kaufmann 69555825f8
eclib: 20180815 -> 20190226 (#58801)
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360.
2019-04-02 15:39:20 +00:00
R. RyanTM 5f4e5553bc jmol: 14.29.31 -> 14.29.32 (#58698)
Semi-automatic update generated by
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based on information from
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2019-04-01 20:12:53 +00:00
markuskowa c637aeff19
Merge pull request #58541 from luispedro/add_megahit
megahit: init at 1.1.4
2019-03-31 12:51:59 +02:00
Luis Pedro Coelho bf48451959 megahit: init at 1.1.4
This is widely used in bioinformatics for assembling genomes &
metagenomes
2019-03-31 05:56:14 +02:00
Dmitry Kalinkin ea757ac59f
Merge pull request #58108 from veprbl/pr/root5_fix
root5: fix build
2019-03-30 22:36:23 -04:00
R. RyanTM 893abe12e8 bowtie2: 2.3.4.3 -> 2.3.5 (#58014)
Semi-automatic update generated by
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2019-03-31 00:37:38 +01:00
Silvan Mosberger aadb1cbe26
Merge pull request #58494 from markuskowa/upd-octopus
octopus: 8.3 -> 8.4
2019-03-29 20:43:28 +01:00
markuskowa 7701fd7603
Merge pull request #58097 from r-ryantm/auto-update/ginac
ginac: 1.7.4 -> 1.7.5
2019-03-29 20:27:39 +01:00
Silvan Mosberger 030b845413
Merge pull request #58492 from markuskowa/upd-molden
molden: 5.9.3 -> 5.9.5
2019-03-29 20:16:08 +01:00
geistesk 5e6273df68 stellarium: 0.18.3 -> 0.19.0 2019-03-28 21:21:54 +01:00
markuskowa 403aa2dfed
Merge pull request #58180 from luzpaz/gmsh4.2.2
gmsh 4.2.1->4.2.2
2019-03-28 18:11:58 +01:00
Markus Kowalewski 3c19324e2a
octopus: 8.3 -> 8.4 2019-03-28 18:00:41 +01:00
Markus Kowalewski 6ea9c0243b
molden: 5.9.3 -> 5.9.5 2019-03-28 17:39:15 +01:00
R. RyanTM 2ce544a8b1 minimap2: 2.15 -> 2.16 (#57319)
Semi-automatic update generated by
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2019-03-27 23:25:52 +01:00
R. RyanTM 1b73fd1954 paml: 4.9h -> 4.9i (#57354)
Semi-automatic update generated by
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2019-03-27 15:44:21 +01:00
Bruno Bzeznik 00431493c0 itsx: init at 1.1.1 2019-03-26 15:52:35 +01:00
Joachim F c9cd1356ea
Merge pull request #56522 from bzizou/messer-slim
messer-slim: init at 3.2.1
2019-03-26 00:42:58 +00:00
Gabriel Ebner 4446452347
Merge pull request #58163 from dtzWill/update/qalculate-3
libqalculate,qalculate-gtk: 2.9.0 -> 3.0.0
2019-03-23 18:50:24 +01:00
luz.paz 13158c692c gmsh 4.2.1->4.2.2 2019-03-23 12:51:12 -04:00
markuskowa b10799905c
Merge pull request #58162 from r-ryantm/auto-update/gromacs
gromacs: 2019 -> 2019.1
2019-03-23 12:29:48 +01:00
Will Dietz 24484b216a qalculate-gtk: 2.9.0 -> 3.0.0
http://qalculate.github.io/news.html
2019-03-23 01:09:17 -05:00
R. RyanTM c70807aa13 gromacs: 2019 -> 2019.1
Semi-automatic update generated by
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2019-03-22 22:05:26 -07:00
Gabriel Ebner 11318d1ba2 elan: 0.7.4 -> 0.7.5 2019-03-22 11:16:44 +01:00
Jörg Thalheim 70d6db9097
Merge pull request #58065 from r-ryantm/auto-update/eagle
eagle: 9.1.2 -> 9.3.1
2019-03-22 07:22:58 +00:00
R. RyanTM 34cba0b001 ginac: 1.7.4 -> 1.7.5
Semi-automatic update generated by
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2019-03-21 17:54:31 -07:00
R. RyanTM 6c14a2f3f8 eagle: 9.1.2 -> 9.3.1
Semi-automatic update generated by
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2019-03-21 10:40:06 -07:00
worldofpeace 0353967957 nasc: 0.5.1 -> 0.5.2
Main improvment is that libqalculatenasc.so is now properly linked

Changelog: https://github.com/parnold-x/nasc/compare/0.5.1...0.5.2
2019-03-20 23:10:33 -04:00
Gabriel Ebner 52c3ee6c4d elan: 0.7.2 -> 0.7.4 2019-03-20 13:33:24 +01:00
Dmitry Kalinkin c36f841ec7
root5: fix build 2019-03-20 00:26:13 -04:00
Timo Kaufmann 5fc5881221
sage: backport bugfix (#57794) 2019-03-17 14:36:01 +00:00
Timo Kaufmann 8fc3c033cb
pynac: 0.7.23 -> 0.7.24 (#57791)
Apparently some python3 related fixes: https://trac.sagemath.org/ticket/27241

Also switch to using pname.
2019-03-17 14:35:28 +00:00
Stephen a14a7d958f labelimg: fix build (#57714)
for #56826 see https://hydra.nixos.org/build/90477186/nixlog/2
2019-03-15 20:50:03 +01:00
Dmitry Kalinkin d5f97ae600
Merge pull request #57650 from stephengroat/patch-4
apmplanner2: fix build
2019-03-14 15:28:57 -04:00
Alex Branham 1e354a7e40 R: 3.5.2 -> 3.5.3
Closes https://github.com/NixOS/nixpkgs/pull/57400.
2019-03-14 19:50:37 +01:00