{ stdenv, fetchurl, unzip, jre }: stdenv.mkDerivation rec { name = "igv-${version}"; version = "2.3.98"; src = fetchurl { url = "http://data.broadinstitute.org/igv/projects/downloads/IGV_${version}.zip"; sha256 = "1bjdsvx8jsbcry6v7yfclh3vrlsvaw38f3s9587lklj63zj638l2"; }; buildInputs = [ unzip jre ]; installPhase = '' mkdir -pv $out/{share,bin} cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh ln -s $out/share/igv.sh $out/bin/igv chmod +x $out/bin/igv ''; meta = with stdenv.lib; { homepage = "https://www.broadinstitute.org/igv/"; description = "A visualization tool for interactive exploration of genomic datasets"; license = licenses.lgpl21; platforms = platforms.unix; maintainers = [ maintainers.mimadrid ]; }; }