{ lib, stdenv, fetchurl, htslib, zlib, bzip2, xz, curl, perl, python3, bash }: stdenv.mkDerivation rec { pname = "bcftools"; version = "1.11"; src = fetchurl { url = "https://github.com/samtools/bcftools/releases/download/${version}/${pname}-${version}.tar.bz2"; sha256 = "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw"; }; nativeBuildInputs = [ perl python3 ]; buildInputs = [ htslib zlib bzip2 xz curl ]; strictDeps = true; makeFlags = [ "HSTDIR=${htslib}" "prefix=$(out)" "CC=${stdenv.cc.targetPrefix}cc" ]; preCheck = '' patchShebangs misc/ patchShebangs test/ sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl ''; enableParallelBuilding = true; doCheck = true; meta = with lib; { description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants"; license = licenses.mit; homepage = "http://www.htslib.org/"; platforms = platforms.unix; maintainers = [ maintainers.mimame ]; }; }