{ lib, stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, xz, ncurses, boost }: stdenv.mkDerivation rec { pname = "delly"; version = "0.8.7"; src = fetchFromGitHub { owner = "dellytools"; repo = pname; rev = "v${version}"; sha256 = "sha256-DWwC35r8cQbePUzppkFQlev0YZdxk2+BSrNTW/DOY3M="; }; buildInputs = [ zlib htslib bzip2 xz ncurses boost ]; EBROOTHTSLIB = htslib; installPhase = '' runHook preInstall install -Dm555 src/delly $out/bin/delly runHook postInstall ''; meta = with lib; { description = "Structural variant caller for mapped DNA sequenced data"; license = licenses.bsd3; maintainers = with maintainers; [ scalavision ]; platforms = platforms.linux; longDescription = '' Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. ''; }; }