{ lib, stdenv , libpng , libuuid , zlib , bzip2 , xz , openssl , curl , libmysqlclient , bash , fetchFromGitHub , which }: stdenv.mkDerivation rec { pname = "kent"; version = "404"; src = fetchFromGitHub { owner = "ucscGenomeBrowser"; repo = pname; rev = "v${version}_base"; sha256 = "0l5lmqqc6sqkf4hyk3z4825ly0vdlj5xdfad6zd0708cb1v81nbx"; }; buildInputs = [ libpng libuuid zlib bzip2 xz openssl curl libmysqlclient ]; patchPhase = '' substituteInPlace ./src/checkUmask.sh \ --replace "/bin/bash" "${bash}/bin/bash" substituteInPlace ./src/hg/sqlEnvTest.sh \ --replace "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config" ''; buildPhase = '' export MACHTYPE=$(uname -m) export CFLAGS="-fPIC" export MYSQLINC=$(mysql_config --include | sed -e 's/^-I//g') export MYSQLLIBS=$(mysql_config --libs) export DESTBINDIR=$NIX_BUILD_TOP/bin export HOME=$NIX_BUILD_TOP cd ./src chmod +x ./checkUmask.sh ./checkUmask.sh mkdir -p $NIX_BUILD_TOP/lib mkdir -p $NIX_BUILD_TOP/bin/x86_64 make libs cd jkOwnLib make cp ../lib/x86_64/jkOwnLib.a $NIX_BUILD_TOP/lib cp ../lib/x86_64/jkweb.a $NIX_BUILD_TOP/lib cd ../utils make ''; installPhase = '' mkdir -p $out/bin mkdir -p $out/lib cp $NIX_BUILD_TOP/lib/jkOwnLib.a $out/lib cp $NIX_BUILD_TOP/lib/jkweb.a $out/lib cp $NIX_BUILD_TOP/bin/x86_64/* $out/bin ''; meta = with lib; { description = "UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities"; license = licenses.unfree; maintainers = with maintainers; [ scalavision ]; platforms = platforms.linux; }; }