{stdenv, fetchurl, jre, makeWrapper}: stdenv.mkDerivation rec { name = "picard-tools-${version}"; version = "2.7.1"; src = fetchurl { url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar"; sha256 = "0rcfcvy9zacqmh7nyqlm93hzsx6gfygmcf8d2p02h5l69gvygnb9"; }; buildInputs = [ jre makeWrapper ]; phases = [ "installPhase" ]; installPhase = '' mkdir -p $out/libexec/picard cp $src $out/libexec/picard/picard.jar mkdir -p $out/bin makeWrapper ${jre}/bin/java $out/bin/picard --add-flags "-jar $out/libexec/picard/picard.jar" ''; meta = with stdenv.lib; { description = "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."; license = licenses.mit; homepage = https://broadinstitute.github.io/picard/; maintainers = with maintainers; [ jbedo ]; platforms = platforms.all; }; }