{ stdenv , buildPythonPackage , fetchPypi , isPy3k # python dependencies , click , configparser ? null , dateutil , funcsigs , future , futures , mock , networkx , nibabel , numpy , packaging , prov , psutil , pydot , pytest , pytest_xdist , pytest-forked , scipy , simplejson , traits , xvfbwrapper , pytestcov , codecov # other dependencies , which , bash , glibcLocales , callPackage }: assert !isPy3k -> configparser != null; let # This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo. neurdflib = callPackage ./neurdflib.nix { }; in buildPythonPackage rec { pname = "nipype"; version = "1.1.9"; src = fetchPypi { inherit pname version; sha256 = "f80096ec6cfd7cffc05764bba1749e424877140ef1373193f076bdd843f19016"; }; postPatch = '' substituteInPlace nipype/interfaces/base/tests/test_core.py \ --replace "/usr/bin/env bash" "${bash}/bin/bash" ''; propagatedBuildInputs = [ click dateutil funcsigs future networkx neurdflib nibabel numpy packaging prov psutil pydot scipy simplejson traits xvfbwrapper ] ++ stdenv.lib.optional (!isPy3k) [ configparser futures ]; checkInputs = [ codecov glibcLocales mock pytest pytest-forked pytest_xdist pytestcov which ]; checkPhase = '' LC_ALL="en_US.UTF-8" pytest -v --doctest-modules nipype ''; # See: https://github.com/nipy/nipype/issues/2839 doCheck = false; meta = with stdenv.lib; { homepage = https://nipy.org/nipype/; description = "Neuroimaging in Python: Pipelines and Interfaces"; license = licenses.bsd3; maintainers = with maintainers; [ ashgillman ]; }; }