{ lib, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }: python27Packages.buildPythonApplication rec { pname = "eggnog-mapper"; version = "1.0.3"; src = fetchFromGitHub { owner = "eggnogdb"; repo = "eggnog-mapper"; rev = version; sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv"; }; patches = (fetchpatch { url = "https://github.com/eggnogdb/eggnog-mapper/commit/6972f601ade85b65090efca747d2302acb58507f.patch"; sha256 = "0abnmn0bh11jihf5d3cggiild1ykawzv5f5fhb4cyyi8fvy4hcxf"; }); nativeBuildInputs = [ makeWrapper ]; propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ]; # make emapper find diamond & hmmer makeWrapperArgs = [ ''--prefix PATH ':' "${diamond}/bin"'' ''--prefix PATH ':' "${hmmer}/bin"'' ]; # Tests rely on some of the databases being available, which is not bundled # with this package as (1) in total, they represent >100GB of data, and (2) # the user can download only those that interest them. doCheck = false; meta = with lib; { description = "Fast genome-wide functional annotation through orthology assignment"; license = licenses.gpl2; homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki"; maintainers = with maintainers; [ luispedro ]; platforms = platforms.all; }; }