{lib, stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}: let python = python27.withPackages (ps: with ps; [ cython ]); in stdenv.mkDerivation { pname = "platypus-unstable"; version = "2018-07-22"; src = fetchFromGitHub { owner = "andyrimmer"; repo = "Platypus"; rev = "3e72641c69800da0cd4906b090298e654d316ee1"; sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw"; }; nativeBuildInputs = [ makeWrapper ]; buildInputs = [ htslib python zlib ]; buildPhase = '' patchShebangs . make ''; installPhase = '' mkdir -p $out/libexec/platypus cp -r ./* $out/libexec/platypus mkdir -p $out/bin makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py" ''; meta = with lib; { description = "The Platypus variant caller"; license = licenses.gpl3; homepage = "https://github.com/andyrimmer/Platypus"; maintainers = with maintainers; [ jbedo ]; platforms = platforms.x86_64; }; }