{lib, stdenv, fetchurl, jre, unzip, makeWrapper}: stdenv.mkDerivation rec { pname = "snpeff"; version = "4.3t"; src = fetchurl { url = "mirror://sourceforge/project/snpeff/snpEff_v${builtins.replaceStrings [ "." ] [ "_" ] version}_core.zip"; sha256 = "0i12mv93bfv8xjwc3rs2x73d6hkvi7kgbbbx3ry984l3ly4p6nnm"; }; nativeBuildInputs = [ makeWrapper ]; buildInputs = [ unzip jre ]; sourceRoot = "snpEff"; installPhase = '' mkdir -p $out/libexec/snpeff cp *.jar *.config $out/libexec/snpeff mkdir -p $out/bin makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar" makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar" ''; meta = with lib; { description = "Genetic variant annotation and effect prediction toolbox"; license = licenses.lgpl3; homepage = "http://snpeff.sourceforge.net/"; maintainers = with maintainers; [ jbedo ]; platforms = platforms.all; }; }