nixpkgs/pkgs/development/libraries/libminc/default.nix
2021-01-21 19:11:02 -08:00

46 lines
1.2 KiB
Nix

{ lib, stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
stdenv.mkDerivation rec {
pname = "libminc";
version = "unstable-2020-07-17";
owner = "BIC-MNI";
src = fetchFromGitHub {
inherit owner;
repo = pname;
rev = "ffb5fb234a852ea7e8da8bb2b3b49f67acbe56ca";
sha256 = "0yr4ksghpvxh9zg0a4p7hvln3qirsi08plvjp5kxx2qiyj96zsdm";
};
postPatch = ''
patchShebangs .
'';
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib nifticlib ];
propagatedBuildInputs = [ netcdf hdf5 ];
cmakeFlags = [
"-DLIBMINC_MINC1_SUPPORT=ON"
"-DLIBMINC_BUILD_SHARED_LIBS=ON"
"-DLIBMINC_USE_SYSTEM_NIFTI=ON"
];
doCheck = !stdenv.isDarwin;
checkPhase = ''
export LD_LIBRARY_PATH="$(pwd)" # see #22060
ctest -j1 -E 'ezminc_rw_test' --output-on-failure
# -j1: see https://github.com/BIC-MNI/libminc/issues/110
# ezminc_rw_test: can't find libminc_io.so.5.2.0
'';
meta = with lib; {
homepage = "https://github.com/BIC-MNI/libminc";
description = "Medical imaging library based on HDF5";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}