nixpkgs/pkgs/applications/science/biology/freebayes/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

30 lines
789 B
Nix

{ lib, stdenv, fetchFromGitHub, zlib, bzip2, lzma }:
stdenv.mkDerivation rec {
pname = "freebayes";
version = "1.3.1";
src = fetchFromGitHub {
name = "freebayes-${version}-src";
owner = "ekg";
repo = "freebayes";
rev = "v${version}";
sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
fetchSubmodules = true;
};
buildInputs = [ zlib bzip2 lzma ];
installPhase = ''
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
'';
meta = with lib; {
description = "Bayesian haplotype-based polymorphism discovery and genotyping";
license = licenses.mit;
homepage = "https://github.com/ekg/freebayes";
maintainers = with maintainers; [ jdagilliland ];
platforms = [ "x86_64-linux" ];
};
}