nixpkgs/pkgs/development/python-modules/pandas/default.nix
Jörg Thalheim dadc7eb329
treewide: use runtimeShell instead of stdenv.shell whenever possible
Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.
2019-02-26 14:10:49 +00:00

121 lines
3 KiB
Nix

{ buildPythonPackage
, fetchPypi
, python
, stdenv
, pytest
, glibcLocales
, cython
, dateutil
, scipy
, moto
, numexpr
, pytz
, xlrd
, bottleneck
, sqlalchemy
, lxml
, html5lib
, beautifulsoup4
, hypothesis
, openpyxl
, tables
, xlwt
, runtimeShell
, libcxx ? null
}:
let
inherit (stdenv.lib) optional optionals optionalString;
inherit (stdenv) isDarwin;
in buildPythonPackage rec {
pname = "pandas";
version = "0.24.1";
src = fetchPypi {
inherit pname version;
sha256 = "435821cb2501eabbcee7e83614bd710940dc0cf28b5afbc4bdb816c31cec71af";
};
checkInputs = [ pytest glibcLocales moto hypothesis ];
nativeBuildInputs = [ cython ];
buildInputs = optional isDarwin libcxx;
propagatedBuildInputs = [
dateutil
scipy
numexpr
pytz
xlrd
bottleneck
sqlalchemy
lxml
html5lib
beautifulsoup4
openpyxl
tables
xlwt
];
# For OSX, we need to add a dependency on libcxx, which provides
# `complex.h` and other libraries that pandas depends on to build.
postPatch = optionalString isDarwin ''
cpp_sdk="${libcxx}/include/c++/v1";
echo "Adding $cpp_sdk to the setup.py common_include variable"
substituteInPlace setup.py \
--replace "['pandas/src/klib', 'pandas/src']" \
"['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
'';
disabledTests = stdenv.lib.concatMapStringsSep " and " (s: "not " + s) ([
# since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat
# was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case
"test_fallback_plural"
"test_ambiguous_flags"
"test_ambiguous_compat"
# Locale-related
"test_names"
"test_dt_accessor_datetime_name_accessors"
"test_datetime_name_accessors"
# Can't import from test folder
"test_oo_optimizable"
# Disable IO related tests because IO data is no longer distributed
"io"
# KeyError Timestamp
"test_to_excel"
] ++ optionals isDarwin [
"test_locale"
"test_clipboard"
]);
doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture
checkPhase = ''
runHook preCheck
''
# TODO: Get locale and clipboard support working on darwin.
# Until then we disable the tests.
+ optionalString isDarwin ''
# Fake the impure dependencies pbpaste and pbcopy
echo "#!${runtimeShell}" > pbcopy
echo "#!${runtimeShell}" > pbpaste
chmod a+x pbcopy pbpaste
export PATH=$(pwd):$PATH
'' + ''
LC_ALL="en_US.UTF-8" py.test $out/${python.sitePackages}/pandas --skip-slow --skip-network -k "$disabledTests"
runHook postCheck
'';
meta = {
# https://github.com/pandas-dev/pandas/issues/14866
# pandas devs are no longer testing i686 so safer to assume it's broken
broken = stdenv.isi686;
homepage = http://pandas.pydata.org/;
description = "Python Data Analysis Library";
license = stdenv.lib.licenses.bsd3;
maintainers = with stdenv.lib.maintainers; [ raskin fridh knedlsepp ];
platforms = stdenv.lib.platforms.unix;
};
}