nixpkgs/pkgs/applications/science/biology
2020-04-01 17:29:55 +00:00
..
ants ants: use itk 4.x 2019-09-13 11:54:21 +02:00
aragorn aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools bcftools: 1.9 -> 1.10.2 2019-12-22 20:00:29 -08:00
bedtools bedtools: 2.29.1 -> 2.29.2 2019-12-18 10:39:25 +11:00
bftools bftools: 5.9.2 -> 6.3.0 2019-12-06 02:11:00 -08:00
blast blast: init at 2.10.0 (#61430) 2020-01-07 20:14:18 +01:00
bowtie2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
bwa treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
cd-hit cd-hit: init at 4.8.1 2019-06-13 14:35:13 +02:00
clustal-omega treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
cmtk treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
conglomerate lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
dcm2niix dcm2niix: 1.0.20190410 -> 1.0.20190902 2019-10-22 16:31:19 -07:00
deeptools deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
delly delly: 0.8.1 -> 0.8.2 2020-02-11 19:21:59 +11:00
diamond treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
ecopcr ecopcr: init at 0.8.0 2017-02-06 16:01:08 +01:00
eggnog-mapper treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
emboss emboss: fix build 2017-03-13 13:15:51 +01:00
est-sfs est-sfs: init at 2.03 2019-07-16 13:55:59 +02:00
exonerate exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
EZminc EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
freebayes freebayes: 2017-08-23 -> 1.3.1 (2019-06-03) 2019-11-20 09:10:31 -08:00
hisat2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
hmmer hmmer: 3.2.1 -> 3.3 2019-11-27 18:40:23 -08:00
igv maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
inormalize lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
itsx treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
iv iv: only use patchelf on linux 2019-06-05 23:42:58 -04:00
kallisto kallisto: 0.46.1 -> 0.46.2 2020-02-15 22:39:58 +01:00
kssd kssd: init at 1.0 2019-12-08 16:48:59 +01:00
last last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit megahit: 1.1.4 -> 1.2.9 2019-11-02 15:53:57 +01:00
messer-slim treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
migrate migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
minc-tools minc_tools: enable building conversion tools 2020-02-10 19:53:25 +01:00
minc-widgets lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
mni_autoreg treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
mosdepth treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
mrbayes
mrtrix mrtrix: init at 3.0_RC3_latest 2020-02-16 22:25:25 -05:00
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
N3 lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
ncbi-tools treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
neuron treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
niftyreg niftyreg: fix build with gcc9 2019-11-03 14:43:37 +01:00
niftyseg nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
octopus treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
paml paml: 4.9i -> 4.9j 2019-12-01 18:43:58 +01:00
picard-tools picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
platypus treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
plink pkgs: refactor needless quoting of homepage meta attribute (#27809) 2017-08-01 22:03:30 +02:00
plink-ng treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
poretools treewide: fix redirected urls 2020-01-22 11:26:22 +01:00
prodigal Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
raxml treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
samtools samtools: 1.9 -> 1.10 2020-01-19 13:13:01 -08:00
seaview seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
snpeff treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
somatic-sniper treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
sortmerna sortmerna: init at 3.0.3 2019-08-27 00:37:43 +02:00
spades Revert "Revert "Merge master into staging-next"" 2020-02-05 19:41:25 +01:00
stacks stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
star star: 2.7.2b -> 2.7.3a 2019-11-03 10:23:05 +01:00
strelka strelka: fix build w/ gcc9 2019-12-30 03:18:19 +01:00
sumatools treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: init at 1.0 2019-12-29 17:16:10 +11:00
trimal trimal: init at 1.4.1 2019-06-14 16:31:39 +02:00
truvari truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
varscan treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
vcftools treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00