nixpkgs/pkgs/applications/science/biology/plink-ng/default.nix

35 lines
985 B
Nix

{ stdenv, fetchFromGitHub, zlib, openblas, darwin}:
stdenv.mkDerivation rec {
name = "plink-ng-${version}";
version = "1.90b3";
src = fetchFromGitHub {
owner = "chrchang";
repo = "plink-ng";
rev = "v${version}";
sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq";
};
buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ;
buildPhase = ''
sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h
${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""}
make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std
'';
installPhase = ''
mkdir -p $out/bin
cp plink $out/bin
'';
meta = {
description = "A comprehensive update to the PLINK association analysis toolset";
homepage = https://www.cog-genomics.org/plink2;
license = stdenv.lib.licenses.gpl3;
platforms = stdenv.lib.platforms.linux;
};
}