nixpkgs/pkgs/applications/science/biology/sambamba/default.nix
2021-05-22 20:56:09 +02:00

40 lines
1.1 KiB
Nix

{ lib, stdenv, fetchFromGitHub, fetchpatch, python3, which, ldc, zlib }:
stdenv.mkDerivation rec {
pname = "sambamba";
version = "0.8.0";
src = fetchFromGitHub {
owner = "biod";
repo = "sambamba";
rev = "v${version}";
sha256 = "sha256:0kx5a0fmvv9ldz2hnh7qavgf7711kqc73zxf51k4cca4hr58zxr9";
fetchSubmodules = true;
};
patches = [
# Fixes hardcoded gcc, making clang build possible.
(fetchpatch {
url = "https://github.com/biod/sambamba/commit/c50a1c91e1ba062635467f197139bf6784e9be15.patch";
sha256 = "1y0vlybmb9wpg4z1nca7m96mk9hxmvd3yrg7w8rxscj45hcqvf8q";
})
];
nativeBuildInputs = [ which python3 ldc ];
buildInputs = [ zlib ];
# Upstream's install target is broken; copy manually
installPhase = ''
mkdir -p $out/bin
cp bin/sambamba-${version} $out/bin/sambamba
'';
meta = with lib; {
description = "SAM/BAM processing tool";
homepage = "https://lomereiter.github.io/sambamba/";
maintainers = with maintainers; [ jbedo ];
license = with licenses; gpl2;
platforms = platforms.x86_64;
};
}