nixpkgs/pkgs/applications/science/biology/sumatools/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

69 lines
1.7 KiB
Nix

{ lib, gccStdenv, fetchFromGitLab, zlib }:
let
stdenv = gccStdenv;
meta = with lib; {
description = "Fast and exact comparison and clustering of sequences";
homepage = "https://metabarcoding.org/sumatra";
maintainers = [ maintainers.bzizou ];
platforms = platforms.unix;
};
in rec {
# Suma library
sumalibs = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumalibs";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "sumalib_v${version}";
sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a";
};
makeFlags = [ "PREFIX=$(out)" ];
inherit meta;
};
# Sumatra
sumatra = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumatra";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "${pname}_v${version}";
sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6";
};
buildInputs = [ sumalibs zlib ];
makeFlags = [
"LIBSUMA=${sumalibs}/lib/libsuma.a"
"LIBSUMAPATH=-L${sumalibs}"
"PREFIX=$(out)"
];
inherit meta;
};
# Sumaclust
sumaclust = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumaclust";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "${pname}_v${version}";
sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds";
};
buildInputs = [ sumalibs ];
makeFlags = [
"LIBSUMA=${sumalibs}/lib/libsuma.a"
"LIBSUMAPATH=-L${sumalibs}"
"PREFIX=$(out)"
];
inherit meta;
};
}