nixpkgs/pkgs/applications/science/biology/igv/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

36 lines
1 KiB
Nix

{ lib, stdenv, fetchzip, jdk11 }:
stdenv.mkDerivation rec {
pname = "igv";
version = "2.8.13";
src = fetchzip {
url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip";
sha256 = "0sab478jq96iw3fv0560hrrj8qbh40r8m4ncypdb7991j9haxl09";
};
installPhase = ''
mkdir -pv $out/{share,bin}
cp -Rv * $out/share/
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
ln -s $out/share/igv.sh $out/bin/igv
ln -s $out/share/igvtools $out/bin/igvtools
chmod +x $out/bin/igv
chmod +x $out/bin/igvtools
'';
meta = with lib; {
homepage = "https://www.broadinstitute.org/igv/";
description = "A visualization tool for interactive exploration of genomic datasets";
license = licenses.mit;
platforms = platforms.unix;
maintainers = [ maintainers.mimame ];
};
}