nixpkgs/pkgs/applications/science/biology/samtools/samtools_0_1_19.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

34 lines
747 B
Nix

{ lib, stdenv, fetchurl, zlib }:
stdenv.mkDerivation rec {
pname = "samtools";
version = "0.1.19";
src = fetchurl {
url = "mirror://sourceforge/samtools/${pname}-${version}.tar.bz2";
sha256 = "d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4";
};
patches = [
./samtools-0.1.19-no-curses.patch
];
buildInputs = [ zlib ];
installPhase = ''
mkdir -p $out/bin
mkdir -p $out/share/man
cp samtools $out/bin
cp samtools.1 $out/share/man
'';
meta = with lib; {
description = "Tools for manipulating SAM/BAM/CRAM format";
license = licenses.mit;
homepage = "http://samtools.sourceforge.net/";
platforms = platforms.unix;
maintainers = [ maintainers.unode ];
};
}