nixpkgs/pkgs/applications/science/biology
Robin Gloster c6f1c9044b
Merge pull request #63282 from jbedo/strelka
strelka: 2.9.5 -> 2.9.10
2019-08-01 23:44:58 +00:00
..
ants treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
aragorn aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
bcftools bcftools: 1.8 -> 1.9 (#43950) 2018-07-30 22:36:27 +02:00
bedtools bedtools: 2.27.1 -> 2.28.0 2019-07-20 14:15:38 +02:00
bftools bftools: init at 5.9.2 (#53769) 2019-01-10 18:28:28 -05:00
bowtie2 bowtie2: 2.3.5 -> 2.3.5.1 2019-05-01 11:17:16 +02:00
bwa bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
cd-hit cd-hit: init at 4.8.1 2019-06-13 14:35:13 +02:00
clustal-omega clustal-omega: init at 1.2.4 2019-03-26 15:45:59 +01:00
cmtk treewide: make -Wno-error flags clang-only 2019-04-29 21:34:24 -04:00
conglomerate lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
dcm2niix dcm2niix: 1.0.20170130 -> 1.0.20190410 2019-06-18 22:12:40 +02:00
diamond pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
ecopcr ecopcr: init at 0.8.0 2017-02-06 16:01:08 +01:00
eggnog-mapper eggnog-mapper: fix patch URL and hash 2019-05-13 16:00:07 +02:00
emboss emboss: fix build 2017-03-13 13:15:51 +01:00
est-sfs est-sfs: init at 2.03 2019-07-16 13:55:59 +02:00
exonerate exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
EZminc treewide: remove ctest usages 2018-11-18 19:31:02 -06:00
freebayes pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
hisat2 hisat2: fix missing perl dependency 2019-07-05 10:29:51 +10:00
hmmer hmmer: 3.1b2 -> 3.2.1 (#50284) 2018-11-13 15:43:44 +01:00
igv igv: 2.4.17 -> 2.4.19 2019-03-03 20:48:52 +01:00
inormalize lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
itsx treewide: fix redirect URLs 2019-07-10 12:52:51 -07:00
iv iv: only use patchelf on linux 2019-06-05 23:42:58 -04:00
kallisto kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
megahit megahit: init at 1.1.4 2019-03-31 05:56:14 +02:00
messer-slim messer-slim: init at 3.2.1 2019-02-28 15:11:18 +01:00
migrate migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
minc-tools lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minc-widgets lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minimap2 minimap2: 2.16 -> 2.17 2019-05-11 21:12:42 -07:00
mni_autoreg treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
mosdepth mosdepth: 0.2.3 -> 0.2.6 2019-06-22 22:41:59 +02:00
mrbayes treewide: Add lots of meta.platforms 2016-08-02 21:42:43 +03:00
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
N3 lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
ncbi-tools treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
neuron pythonPackages.neuron: restrict to x86 platforms 2019-06-09 12:18:58 +02:00
niftyreg treewide: remove unused variables (#63177) 2019-06-16 19:59:05 +00:00
niftyseg treewide: remove unused variables (#63177) 2019-06-16 19:59:05 +00:00
octopus octopus: init 0.6.3-beta 2019-06-19 23:09:33 +10:00
paml paml: 4.9h -> 4.9i (#57354) 2019-03-27 15:44:21 +01:00
picard-tools picard-tools: 2.20.2 -> 2.20.3 2019-07-15 21:46:51 -07:00
platypus platypus: 2017-03-07 -> 2018-07-22 2018-09-21 22:42:28 +00:00
plink pkgs: refactor needless quoting of homepage meta attribute (#27809) 2017-08-01 22:03:30 +02:00
plink-ng darwin: Disable another bunch of packages never having built successfully 2017-09-22 19:49:57 +03:00
poretools poretools: version number to commit date 2017-08-18 09:59:26 -04:00
prodigal Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
raxml pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
samtools samtools: 1.8 -> 1.9 2018-09-21 22:42:28 +00:00
seaview seaview: init at 4.7 (#46595) 2018-09-13 14:10:44 +02:00
snpeff snpeff: 4.3q -> 4.3t 2019-01-31 15:15:05 +11:00
somatic-sniper somatic-sniper: disable parallel building 2018-08-03 08:27:41 +02:00
stacks stacks: 2.4 -> 2.41 2019-07-17 09:34:10 +02:00
star star: 2.7.0f -> 2.7.1a (#62577) 2019-06-06 18:10:34 +02:00
strelka strelka: 2.9.5 -> 2.9.10 2019-06-17 16:09:25 +10:00
sumatools treewide: remove unused variables (#63177) 2019-06-16 19:59:05 +00:00
varscan varscan: init at 2.4.2 2017-03-08 22:43:49 +01:00
vcftools vcftools: 0.1.15 -> 0.1.16 2018-08-08 00:48:04 -07:00