nixpkgs/pkgs/applications/science/biology/bftools/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

42 lines
1.2 KiB
Nix

{ stdenv, lib, makeWrapper, fetchzip, jre }:
stdenv.mkDerivation rec {
pname = "bftools";
version = "6.3.0";
src = fetchzip {
url = "http://downloads.openmicroscopy.org/bio-formats/${version}/artifacts/bftools.zip";
sha256 = "02nvvmpfglpah1ihd08aw65g1794w588c988cdar1hfl4s80qwhb";
};
installPhase = ''
find . -maxdepth 1 -perm -111 -type f -not -name "*.sh" \
-exec install -vD {} "$out"/bin/{} \;
mkdir $out/libexec
mkdir -p $out/share/java
cp ./*.sh $out/libexec
cp ./*.jar $out/share/java
for file in $out/bin/*; do
substituteInPlace $file --replace "\$BF_DIR" $out/libexec
done
substituteInPlace $out/libexec/bf.sh --replace "\$BF_JAR_DIR" $out/share/java
'';
postFixup = ''
wrapProgram $out/libexec/bf.sh --prefix PATH : "${lib.makeBinPath [ jre ]}"
'';
nativeBuildInputs = [ makeWrapper ];
meta = with lib; {
description = "A bundle of scripts for using Bio-Formats on the command line with bioformats_package.jar already included";
license = licenses.gpl2;
platforms = platforms.all;
homepage = "https://www.openmicroscopy.org/bio-formats/";
maintainers = [ maintainers.tbenst ];
};
}