nixpkgs/pkgs/development/python-modules/ruffus/default.nix
Robert Scott 85e6474eee pythonPackages.ruffus: 2.8.1 -> 2.8.4, fix build
simplify test execution by skipping their makefile entirely. disable tests
on darwin as they are very flaky & hang often. this is probably ok because
we're not hacking this package's source to get it installed, and the user
is probably getting something very similar as they would get using a
regular pip installation.
2020-09-29 06:19:16 -07:00

49 lines
1,003 B
Nix

{ gevent
, buildPythonPackage
, fetchFromGitHub
, hostname
, pytest
, python
, stdenv
}:
buildPythonPackage rec {
pname = "ruffus";
version = "2.8.4";
src = fetchFromGitHub {
owner = "cgat-developers";
repo = pname;
rev = "v${version}";
sha256 = "0fnzpchwwqsy5h18fs0n90s51w25n0dx0l74j0ka6lvhjl5sxn4c";
};
propagatedBuildInputs = [ gevent ];
checkInputs = [
hostname
pytest
];
# tests very flaky & hang often on darwin
doCheck = !stdenv.isDarwin;
# test files do indeed need to be executed separately
checkPhase = ''
pushd ruffus/test
rm test_with_logger.py # spawns 500 processes
for f in test_*.py ; do
HOME=$TMPDIR pytest -v --disable-warnings $f
done
popd
'';
pythonImportsCheck = [ "ruffus" ];
meta = with stdenv.lib; {
description = "Light-weight Python Computational Pipeline Management";
homepage = "http://www.ruffus.org.uk";
license = licenses.mit;
maintainers = [ maintainers.kiwi ];
};
}